git.donarmstrong.com Git - mothur.git/commit

]> git.donarmstrong.com Git - mothur.git/commit

author	westcott <westcott>
	Fri, 26 Feb 2010 14:35:09 +0000 (14:35 +0000)
committer	westcott <westcott>
	Fri, 26 Feb 2010 14:35:09 +0000 (14:35 +0000)
commit	74844a60d80c6dd06e3fb02ee9b928424f9019b0
tree	322baef399f03503a872cd8ff7eedb00a75ea1f2	tree \| snapshot
parent	a218321731df14d231bbc08e79906f757cf1540d	commit \| diff

created mothurOut class to handle logfiles

272 files changed:

Mothur.xcodeproj/project.pbxproj		diff \| blob \| history
ace.cpp		diff \| blob \| history
aligncommand.cpp		diff \| blob \| history
alignment.cpp		diff \| blob \| history
alignment.hpp		diff \| blob \| history
alignmentcell.hpp		diff \| blob \| history
alignmentdb.cpp		diff \| blob \| history
alignmentdb.h		diff \| blob \| history
averagelinkage.cpp		diff \| blob \| history
bayesian.cpp		diff \| blob \| history
bellerophon.cpp		diff \| blob \| history
bergerparker.cpp		diff \| blob \| history
binsequencecommand.cpp		diff \| blob \| history
binsequencecommand.h		diff \| blob \| history
blastalign.cpp		diff \| blob \| history
blastdb.cpp		diff \| blob \| history
boneh.cpp		diff \| blob \| history
boneh.h		diff \| blob \| history
bootstrap.cpp		diff \| blob \| history
bootstrapsharedcommand.cpp		diff \| blob \| history
bootstrapsharedcommand.h		diff \| blob \| history
bstick.cpp		diff \| blob \| history
calculator.cpp		diff \| blob \| history
calculator.h		diff \| blob \| history
ccode.cpp		diff \| blob \| history
chao1.cpp		diff \| blob \| history
chimera.cpp		diff \| blob \| history
chimera.h		diff \| blob \| history
chimeracheckrdp.cpp		diff \| blob \| history
chimerarealigner.cpp		diff \| blob \| history
chimerarealigner.h		diff \| blob \| history
chimeraseqscommand.cpp		diff \| blob \| history
chimeraslayer.cpp		diff \| blob \| history
classify.cpp		diff \| blob \| history
classify.h		diff \| blob \| history
classifyseqscommand.cpp		diff \| blob \| history
classifyseqscommand.h		diff \| blob \| history
cluster.cpp		diff \| blob \| history
cluster.hpp		diff \| blob \| history
clustercommand.cpp		diff \| blob \| history
clustercommand.h		diff \| blob \| history
collect.cpp		diff \| blob \| history
collect.h		diff \| blob \| history
collectcommand.cpp		diff \| blob \| history
collectsharedcommand.cpp		diff \| blob \| history
collectsharedcommand.h		diff \| blob \| history
command.hpp		diff \| blob \| history
commandfactory.cpp		diff \| blob \| history
commandfactory.hpp		diff \| blob \| history
commandoptionparser.cpp		diff \| blob \| history
commandoptionparser.hpp		diff \| blob \| history
completelinkage.cpp		diff \| blob \| history
consensuscommand.cpp		diff \| blob \| history
coverage.cpp		diff \| blob \| history
database.cpp		diff \| blob \| history
database.hpp		diff \| blob \| history
datavector.hpp		diff \| blob \| history
decalc.cpp		diff \| blob \| history
decalc.h		diff \| blob \| history
deconvolutecommand.cpp		diff \| blob \| history
deconvolutecommand.h		diff \| blob \| history
display.h		diff \| blob \| history
dist.h		diff \| blob \| history
distancecommand.cpp		diff \| blob \| history
distancecommand.h		diff \| blob \| history
distancedb.cpp		diff \| blob \| history
efron.cpp		diff \| blob \| history
efron.h		diff \| blob \| history
engine.cpp		diff \| blob \| history
engine.hpp		diff \| blob \| history
fastamap.cpp		diff \| blob \| history
fastamap.h		diff \| blob \| history
fileoutput.cpp		diff \| blob \| history
fileoutput.h		diff \| blob \| history
filterseqscommand.cpp		diff \| blob \| history
formatcolumn.cpp		diff \| blob \| history
formatmatrix.h		diff \| blob \| history
formatphylip.cpp		diff \| blob \| history
fullmatrix.cpp		diff \| blob \| history
fullmatrix.h		diff \| blob \| history
geom.cpp		diff \| blob \| history
getgroupcommand.cpp		diff \| blob \| history
getlabelcommand.cpp		diff \| blob \| history
getlistcountcommand.cpp		diff \| blob \| history
getlistcountcommand.h		diff \| blob \| history
getoturepcommand.cpp		diff \| blob \| history
getoturepcommand.h		diff \| blob \| history
getrabundcommand.cpp		diff \| blob \| history
getsabundcommand.cpp		diff \| blob \| history
getseqscommand.cpp		diff \| blob \| history
getseqscommand.h		diff \| blob \| history
getsharedotucommand.cpp		diff \| blob \| history
getsharedotucommand.h		diff \| blob \| history
globaldata.cpp		diff \| blob \| history
globaldata.hpp		diff \| blob \| history
goodscoverage.cpp		diff \| blob \| history
gotohoverlap.cpp		diff \| blob \| history
groupmap.cpp		diff \| blob \| history
groupmap.h		diff \| blob \| history
hcluster.cpp		diff \| blob \| history
hcluster.h		diff \| blob \| history
hclustercommand.cpp		diff \| blob \| history
hclustercommand.h		diff \| blob \| history
heatmap.cpp		diff \| blob \| history
heatmap.h		diff \| blob \| history
heatmapcommand.cpp		diff \| blob \| history
heatmapcommand.h		diff \| blob \| history
heatmapsim.cpp		diff \| blob \| history
heatmapsim.h		diff \| blob \| history
heatmapsimcommand.cpp		diff \| blob \| history
heatmapsimcommand.h		diff \| blob \| history
helpcommand.cpp		diff \| blob \| history
inputdata.cpp		diff \| blob \| history
inputdata.h		diff \| blob \| history
jackknife.cpp		diff \| blob \| history
kmerdb.cpp		diff \| blob \| history
knn.cpp		diff \| blob \| history
libshuff.cpp		diff \| blob \| history
libshuff.h		diff \| blob \| history
libshuffcommand.cpp		diff \| blob \| history
libshuffcommand.h		diff \| blob \| history
listseqscommand.cpp		diff \| blob \| history
listvector.cpp		diff \| blob \| history
logsd.cpp		diff \| blob \| history
maligner.cpp		diff \| blob \| history
maligner.h		diff \| blob \| history
matrixoutputcommand.cpp		diff \| blob \| history
matrixoutputcommand.h		diff \| blob \| history
mergefilecommand.cpp		diff \| blob \| history
mgclustercommand.cpp		diff \| blob \| history
mothur.cpp		diff \| blob \| history
mothur.h		diff \| blob \| history
nameassignment.cpp		diff \| blob \| history
nameassignment.hpp		diff \| blob \| history
nast.cpp		diff \| blob \| history
nast.hpp		diff \| blob \| history
needlemanoverlap.cpp		diff \| blob \| history
nocommands.cpp		diff \| blob \| history
npshannon.cpp		diff \| blob \| history
optionparser.cpp		diff \| blob \| history
optionparser.h		diff \| blob \| history
ordervector.cpp		diff \| blob \| history
otuhierarchycommand.cpp		diff \| blob \| history
parselistscommand.cpp		diff \| blob \| history
parsimony.cpp		diff \| blob \| history
parsimonycommand.cpp		diff \| blob \| history
parsimonycommand.h		diff \| blob \| history
pcacommand.cpp		diff \| blob \| history
pcacommand.h		diff \| blob \| history
phylotree.cpp		diff \| blob \| history
phylotree.h		diff \| blob \| history
phylotypecommand.cpp		diff \| blob \| history
pintail.cpp		diff \| blob \| history
preclustercommand.cpp		diff \| blob \| history
preclustercommand.h		diff \| blob \| history
progress.cpp		diff \| blob \| history
progress.hpp		diff \| blob \| history
qstat.cpp		diff \| blob \| history
quitcommand.cpp		diff \| blob \| history
rabundvector.cpp		diff \| blob \| history
rarecalc.cpp		diff \| blob \| history
rarecalc.h		diff \| blob \| history
raredisplay.cpp		diff \| blob \| history
rarefact.cpp		diff \| blob \| history
rarefact.h		diff \| blob \| history
rarefactcommand.cpp		diff \| blob \| history
rarefactsharedcommand.cpp		diff \| blob \| history
rarefactsharedcommand.h		diff \| blob \| history
readblast.cpp		diff \| blob \| history
readblast.h		diff \| blob \| history
readcluster.cpp		diff \| blob \| history
readcluster.h		diff \| blob \| history
readcolumn.cpp		diff \| blob \| history
readdistcommand.cpp		diff \| blob \| history
readmatrix.hpp		diff \| blob \| history
readotu.cpp		diff \| blob \| history
readotu.h		diff \| blob \| history
readotucommand.cpp		diff \| blob \| history
readphylip.cpp		diff \| blob \| history
readtree.cpp		diff \| blob \| history
readtree.h		diff \| blob \| history
readtreecommand.cpp		diff \| blob \| history
removeseqscommand.cpp		diff \| blob \| history
removeseqscommand.h		diff \| blob \| history
reversecommand.cpp		diff \| blob \| history
sabundvector.cpp		diff \| blob \| history
screenseqscommand.cpp		diff \| blob \| history
secondarystructurecommand.cpp		diff \| blob \| history
seqsummarycommand.cpp		diff \| blob \| history
sequence.cpp		diff \| blob \| history
sequence.hpp		diff \| blob \| history
sequencedb.cpp		diff \| blob \| history
sequencedb.h		diff \| blob \| history
setdircommand.cpp		diff \| blob \| history
shannon.cpp		diff \| blob \| history
sharedace.cpp		diff \| blob \| history
sharedanderbergs.cpp		diff \| blob \| history
sharedbraycurtis.cpp		diff \| blob \| history
sharedchao1.cpp		diff \| blob \| history
sharedcommand.cpp		diff \| blob \| history
sharedjabund.cpp		diff \| blob \| history
sharedjackknife.cpp		diff \| blob \| history
sharedjclass.cpp		diff \| blob \| history
sharedjest.cpp		diff \| blob \| history
sharedkstest.cpp		diff \| blob \| history
sharedkulczynski.cpp		diff \| blob \| history
sharedkulczynskicody.cpp		diff \| blob \| history
sharedlennon.cpp		diff \| blob \| history
sharedlistvector.cpp		diff \| blob \| history
sharedmarczewski.cpp		diff \| blob \| history
sharedmorisitahorn.cpp		diff \| blob \| history
sharedochiai.cpp		diff \| blob \| history
sharedordervector.cpp		diff \| blob \| history
sharedrabundvector.cpp		diff \| blob \| history
sharedsabundvector.cpp		diff \| blob \| history
sharedsobs.cpp		diff \| blob \| history
sharedsobscollectsummary.cpp		diff \| blob \| history
sharedsorabund.cpp		diff \| blob \| history
sharedsorclass.cpp		diff \| blob \| history
sharedsorest.cpp		diff \| blob \| history
sharedthetan.cpp		diff \| blob \| history
sharedthetayc.cpp		diff \| blob \| history
sharedutilities.cpp		diff \| blob \| history
sharedutilities.h		diff \| blob \| history
shen.cpp		diff \| blob \| history
shen.h		diff \| blob \| history
simpson.cpp		diff \| blob \| history
singlelinkage.cpp		diff \| blob \| history
slayer.cpp		diff \| blob \| history
slayer.h		diff \| blob \| history
slibshuff.cpp		diff \| blob \| history
solow.cpp		diff \| blob \| history
solow.h		diff \| blob \| history
sparsematrix.cpp		diff \| blob \| history
sparsematrix.hpp		diff \| blob \| history
suffixdb.cpp		diff \| blob \| history
suffixnodes.cpp		diff \| blob \| history
suffixnodes.hpp		diff \| blob \| history
suffixtree.cpp		diff \| blob \| history
suffixtree.hpp		diff \| blob \| history
summarycommand.cpp		diff \| blob \| history
summarysharedcommand.cpp		diff \| blob \| history
summarysharedcommand.h		diff \| blob \| history
systemcommand.cpp		diff \| blob \| history
taxonomyequalizer.cpp		diff \| blob \| history
taxonomyequalizer.h		diff \| blob \| history
tree.cpp		diff \| blob \| history
tree.h		diff \| blob \| history
treecalculator.h		diff \| blob \| history
treegroupscommand.cpp		diff \| blob \| history
treegroupscommand.h		diff \| blob \| history
treemap.cpp		diff \| blob \| history
treemap.h		diff \| blob \| history
treenode.cpp		diff \| blob \| history
treenode.h		diff \| blob \| history
trimseqscommand.cpp		diff \| blob \| history
unifracunweightedcommand.cpp		diff \| blob \| history
unifracunweightedcommand.h		diff \| blob \| history
unifracweightedcommand.cpp		diff \| blob \| history
unifracweightedcommand.h		diff \| blob \| history
unweighted.cpp		diff \| blob \| history
uvest.cpp		diff \| blob \| history
uvest.h		diff \| blob \| history
validcalculator.cpp		diff \| blob \| history
validcalculator.h		diff \| blob \| history
validparameter.cpp		diff \| blob \| history
validparameter.h		diff \| blob \| history
venn.cpp		diff \| blob \| history
venn.h		diff \| blob \| history
venncommand.cpp		diff \| blob \| history
weighted.cpp		diff \| blob \| history
whittaker.cpp		diff \| blob \| history

Mothur--16S microbiota sequencing software; mirror of main repository with my branches

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