fixed bug with windows version of trim.seqs when run with 1 processor. fixed file...

[mothur.git] / trimseqscommand.cpp

diff --git a/trimseqscommand.cpp b/trimseqscommand.cpp
index b480702695a2ff6f24c7bcf6657e2f11fb3be86b..9f8fafb24e14a807baa8dd5a981c93556c46e3b7 100644 (file)
--- a/trimseqscommand.cpp
+++ b/trimseqscommand.cpp
@@ -1190,9 +1190,8 @@ int TrimSeqsCommand::setLines(string filename, string qfilename) {
                 cout << fastaFilePos[startIndex] << '\t' << numSeqsPerProcessor << endl;
                 if (qfilename != "") {  qLines.push_back(linePair(qfileFilePos[startIndex], numSeqsPerProcessor)); }
             }
-        
-            if(qfilename == "")        {       qLines = lines; } //files with duds
         }
+            if(qfilename == "")        {       qLines = lines; } //files with duds
                        return 1;
                
                #endif