created mothurOut class to handle logfiles

[mothur.git] / bstick.cpp

diff --git a/bstick.cpp b/bstick.cpp
index 566099772e8cecc3d230dbb033aa1bebed1ab885..d064ebe107e5fbc90fa10015572e60c11f9e5f45 100644 (file)
--- a/bstick.cpp
+++ b/bstick.cpp
@@ -67,8 +67,8 @@ EstOutput BStick::getValues(SAbundVector* rank){
                data[1] = 0.886/sqrt(rdata.size());
                data[2] = 1.031/sqrt(rdata.size());
 
-               /*mothurOut(critVal); mothurOutEndLine();
-               mothurOut("If D-Statistic is less than the critical value then the data fits the Broken Stick model w/ 95% confidence.\n\n");*/
+               /*m->mothurOut(critVal); m->mothurOutEndLine();
+               m->mothurOut("If D-Statistic is less than the critical value then the data fits the Broken Stick model w/ 95% confidence.\n\n");*/
                
 
                if (isnan(data[0]) || isinf(data[0])) { data[0] = 0; }
@@ -78,7 +78,7 @@ EstOutput BStick::getValues(SAbundVector* rank){
                return data;
        }
        catch(exception& e) {
-               errorOut(e, "BStick", "getValues");
+               m->errorOut(e, "BStick", "getValues");
                exit(1);
        }
 }