created mothurOut class to handle logfiles

[mothur.git] / formatmatrix.h

diff --git a/formatmatrix.h b/formatmatrix.h
index 4ef36d95d6d8e11db5bf065a755fd0292e809c17..30e427668bbcca5a9db73b1858097f3c0e0b4379 100644 (file)
--- a/formatmatrix.h
+++ b/formatmatrix.h
@@ -57,7 +57,7 @@
 class FormatMatrix {
 
 public:
-       FormatMatrix(){ }
+       FormatMatrix(){ m = MothurOut::getInstance(); }
        virtual ~FormatMatrix() {}
        
        virtual void read(NameAssignment*){};
@@ -72,6 +72,7 @@ protected:
        float cutoff;
        string distFile;
        vector<int> rowPos;
+       MothurOut* m;
 };
 
 //**********************************************************************************************************************