created mothurOut class to handle logfiles

[mothur.git] / commandfactory.hpp

diff --git a/commandfactory.hpp b/commandfactory.hpp
index d84be62a074dde5dc29b8006a636bd7b67b9607d..e1f62da1444022618454df7078180ed488edf325 100644 (file)
--- a/commandfactory.hpp
+++ b/commandfactory.hpp
@@ -11,6 +11,7 @@
  */
 
 #include "mothur.h"
+#include "mothurout.h";
 
 class Command;
 
@@ -27,6 +28,7 @@ public:
 
 private:
        Command* command;
+       MothurOut* m;
        map<string, string> commands;
        map<string, string>::iterator it;
        string outputDir, inputDir;