created mothurOut class to handle logfiles

[mothur.git] / listvector.cpp

diff --git a/listvector.cpp b/listvector.cpp
index e123298930f706f9bf19d267e0ee17a5ddb41243..94ca02662bc1e59f61312e7c33d2244faa30e3ae 100644 (file)
--- a/listvector.cpp
+++ b/listvector.cpp
@@ -36,7 +36,7 @@ ListVector::ListVector(string id, vector<string> lv) : DataVector(id), data(lv){
                }
        }
        catch(exception& e) {
-               errorOut(e, "ListVector", "ListVector");
+               m->errorOut(e, "ListVector", "ListVector");
                exit(1);
        }
 }
@@ -59,7 +59,7 @@ ListVector::ListVector(ifstream& f) : DataVector(), maxRank(0), numBins(0), numS
                gobble(f);
        }
        catch(exception& e) {
-               errorOut(e, "ListVector", "ListVector");
+               m->errorOut(e, "ListVector", "ListVector");
                exit(1);
        }
 }
@@ -79,7 +79,7 @@ void ListVector::set(int binNumber, string seqNames){
                numSeqs += (nNames_new - nNames_old);
        }
        catch(exception& e) {
-               errorOut(e, "ListVector", "set");
+               m->errorOut(e, "ListVector", "set");
                exit(1);
        }
 }
@@ -104,7 +104,7 @@ void ListVector::push_back(string seqNames){
                numSeqs += nNames;
        }
        catch(exception& e) {
-               errorOut(e, "ListVector", "push_back");
+               m->errorOut(e, "ListVector", "push_back");
                exit(1);
        }
 }
@@ -144,7 +144,7 @@ void ListVector::print(ostream& output){
                output << endl;
        }
        catch(exception& e) {
-               errorOut(e, "ListVector", "print");
+               m->errorOut(e, "ListVector", "print");
                exit(1);
        }
 }
@@ -175,7 +175,7 @@ RAbundVector ListVector::getRAbundVector(){
                return rav;
        }
        catch(exception& e) {
-               errorOut(e, "ListVector", "getRAbundVector");
+               m->errorOut(e, "ListVector", "getRAbundVector");
                exit(1);
        }
 }
@@ -196,7 +196,7 @@ SAbundVector ListVector::getSAbundVector(){
                return sav;
        }
        catch(exception& e) {
-               errorOut(e, "ListVector", "getSAbundVector");
+               m->errorOut(e, "ListVector", "getSAbundVector");
                exit(1);
        }
 }
@@ -238,7 +238,7 @@ OrderVector ListVector::getOrderVector(map<string,int>* orderMap = NULL){
                                        }
                                        else{
                                                if(orderMap->count(seqName) == 0){
-                                                       mothurOut(seqName + " not found, check *.names file\n");
+                                                       m->mothurOut(seqName + " not found, check *.names file\n");
                                                        exit(1);
                                                }
                                        
@@ -248,7 +248,7 @@ OrderVector ListVector::getOrderVector(map<string,int>* orderMap = NULL){
                                }
                        
                                if(orderMap->count(seqName) == 0){
-                                       mothurOut(seqName + " not found, check *.names file\n");
+                                       m->mothurOut(seqName + " not found, check *.names file\n");
                                        exit(1);
                                }
                                ov.set((*orderMap)[seqName], i);        
@@ -261,7 +261,7 @@ OrderVector ListVector::getOrderVector(map<string,int>* orderMap = NULL){
                }
        }
        catch(exception& e) {
-               errorOut(e, "ListVector", "getOrderVector");
+               m->errorOut(e, "ListVector", "getOrderVector");
                exit(1);
        }
 }