created mothurOut class to handle logfiles

[mothur.git] / getlabelcommand.cpp

diff --git a/getlabelcommand.cpp b/getlabelcommand.cpp
index 2ba3054978ecda124017a1e5d5f0f73640d28702..d306250f5b82b48cd6b353c4af0619907e2b9086 100644 (file)
--- a/getlabelcommand.cpp
+++ b/getlabelcommand.cpp
@@ -11,7 +11,7 @@
 
 //**********************************************************************************************************************
 
-GetlabelCommand::GetlabelCommand(string option){
+GetlabelCommand::GetlabelCommand(string option)  {
        try {
                globaldata = GlobalData::getInstance();
                abort = false;
@@ -20,12 +20,12 @@ GetlabelCommand::GetlabelCommand(string option){
                if(option == "help") { help(); abort = true; }
                
                else {
-                       if ((globaldata->getListFile() == "") && (globaldata->getRabundFile() == "") && (globaldata->getSabundFile() == "")) { mothurOut("You must read a list, sabund or rabund before you can use the get.label command."); mothurOutEndLine(); abort = true; }                               
+                       if ((globaldata->getListFile() == "") && (globaldata->getRabundFile() == "") && (globaldata->getSabundFile() == "")) { m->mothurOut("You must read a list, sabund or rabund before you can use the get.label command."); m->mothurOutEndLine(); abort = true; }                         
                }
 
        }
        catch(exception& e) {
-               errorOut(e, "GetlabelCommand", "GetlabelCommand");
+               m->errorOut(e, "GetlabelCommand", "GetlabelCommand");
                exit(1);
        }
 }
@@ -33,14 +33,14 @@ GetlabelCommand::GetlabelCommand(string option){
 
 void GetlabelCommand::help(){
        try {
-               mothurOut("The get.label command can only be executed after a successful read.otu command.\n");
-               mothurOut("You may not use any parameters with the get.label command.\n");
-               mothurOut("The get.label command should be in the following format: \n");
-               mothurOut("get.label()\n");
-               mothurOut("Example get.label().\n");
+               m->mothurOut("The get.label command can only be executed after a successful read.otu command.\n");
+               m->mothurOut("You may not use any parameters with the get.label command.\n");
+               m->mothurOut("The get.label command should be in the following format: \n");
+               m->mothurOut("get.label()\n");
+               m->mothurOut("Example get.label().\n");
        }
        catch(exception& e) {
-               errorOut(e, "GetlabelCommand", "help");
+               m->errorOut(e, "GetlabelCommand", "help");
                exit(1);
        }
 }
@@ -67,7 +67,7 @@ int GetlabelCommand::execute(){
                        if(count > numBins)
                                count = 0;
                        if(count == 0) {
-                               mothurOut(label); mothurOutEndLine();
+                               m->mothurOut(label); m->mothurOutEndLine();
                                in >> numBins;
                        }
                        in >> label;
@@ -79,7 +79,7 @@ int GetlabelCommand::execute(){
        }
 
        catch(exception& e) {
-               errorOut(e, "GetlabelCommand", "execute");
+               m->errorOut(e, "GetlabelCommand", "execute");
                exit(1);
        }
 }