created mothurOut class to handle logfiles

[mothur.git] / nameassignment.cpp

diff --git a/nameassignment.cpp b/nameassignment.cpp
index bc088f45924f4af9db951e81882376cd64fbc8f0..42d374d0b9e74842e4d3f289c75ae61645556ebd 100644 (file)
--- a/nameassignment.cpp
+++ b/nameassignment.cpp
@@ -5,7 +5,7 @@
 //**********************************************************************************************************************
 
 NameAssignment::NameAssignment(string nameMapFile){
-       
+       m = MothurOut::getInstance();
        openInputFile(nameMapFile, fileHandle);
        
 }
@@ -36,7 +36,7 @@ void NameAssignment::readMap(){
        
        }
        catch(exception& e) {
-               errorOut(e, "NameAssignment", "readMap");
+               m->errorOut(e, "NameAssignment", "readMap");
                exit(1);
        }
 }
@@ -51,7 +51,7 @@ void NameAssignment::push_back(string name) {
                list.push_back(name);
        }
        catch(exception& e) {
-               errorOut(e, "NameAssignment", "push_back");
+               m->errorOut(e, "NameAssignment", "push_back");
                exit(1);
        }
 }
@@ -75,7 +75,7 @@ void NameAssignment::print(ostream& out){
                }
        }
        catch(exception& e) {
-               errorOut(e, "NameAssignment", "print");
+               m->errorOut(e, "NameAssignment", "print");
                exit(1);
        }
 }