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2011-03-07	pschloss	removed some couts from qualityscores.cpp	commit \| commitdiff \| tree
2011-03-07	pschloss	fix trim.seqs / qualscores bug	commit \| commitdiff \| tree
2011-03-03	pschloss	fixed bug in seqerrorcommand	commit \| commitdiff \| tree
2011-03-03	pschloss	took out couts	commit \| commitdiff \| tree
2011-03-03	pschloss	modified reportfile class	commit \| commitdiff \| tree
2011-03-03	pschloss	modified seqerror and qualscores	commit \| commitdiff \| tree
2011-03-03	pschloss	modified seqerror and qualscores	commit \| commitdiff \| tree
2011-02-26	pschloss	some minor changes	commit \| commitdiff \| tree
2011-02-21	pschloss	reworked amova / homova / anosim	commit \| commitdiff \| tree
2011-02-18	pschloss	mods to amova command	commit \| commitdiff \| tree
2011-02-16	pschloss	bug fix to seq.error	commit \| commitdiff \| tree
2011-02-15	pschloss	fixed an mpi bug in shhh.seqs	commit \| commitdiff \| tree
2011-02-15	pschloss	took cout's from shhh.seqs	commit \| commitdiff \| tree
2011-02-15	pschloss	fixed bugg in shhh.seqs command	commit \| commitdiff \| tree
2011-02-15	pschloss	mods to shhh.seqs command	commit \| commitdiff \| tree
2011-02-15	pschloss	mods to seq.errror	commit \| commitdiff \| tree
2011-02-14	pschloss	* empty log message *	commit \| commitdiff \| tree
2011-02-11	pschloss	mod to seq.error to allow for degenerate bases in the...	commit \| commitdiff \| tree
2011-02-11	pschloss	shhh.seqs and trim.flows modifications.	commit \| commitdiff \| tree
2011-02-10	pschloss	modified reverse.seqs and qualscores.cpp	commit \| commitdiff \| tree
2011-02-09	pschloss	mods to trim.seqs	commit \| commitdiff \| tree
2011-02-09	pschloss	mods to trim.seqs	commit \| commitdiff \| tree
2011-02-09	pschloss	mods to shhhercommand and seqerrorcommand	commit \| commitdiff \| tree
2011-02-08	pschloss	changes to trim.flows command	commit \| commitdiff \| tree
2011-02-04	pschloss	removed trimera checking from refchimeratest	commit \| commitdiff \| tree
2011-02-03	pschloss	true chimera testing using reference sequences	commit \| commitdiff \| tree
2011-02-03	pschloss	* empty log message *	commit \| commitdiff \| tree
2011-01-04	pschloss	modifications to shhh.seqs	commit \| commitdiff \| tree
2010-12-31	pschloss	added shhh.seqs command	commit \| commitdiff \| tree
2010-12-31	pschloss	added shhh.seqs command	commit \| commitdiff \| tree
2010-12-23	pschloss	addition of trim.flows	commit \| commitdiff \| tree
2010-12-21	pschloss	more changes to error.seqs command and quality scores...	commit \| commitdiff \| tree
2010-12-20	pschloss	pat's changes to seq.error command	commit \| commitdiff \| tree
2010-12-07	pschloss	changes to seqerrorcommand	commit \| commitdiff \| tree
2010-08-26	pschloss	changes to read.tree	commit \| commitdiff \| tree
2010-08-26	pschloss	modified splitAtComma in mothurout command	commit \| commitdiff \| tree
2010-08-26	pschloss	changes to read.otu(list/shared) - took out substr...	commit \| commitdiff \| tree
2010-08-26	pschloss	took out debugging output code from distance calculators	commit \| commitdiff \| tree
2010-08-23	pschloss	added a few evenness calculators and fixed a couple...	commit \| commitdiff \| tree
2010-08-20	pschloss	fixed filterseqscommand bug where trump wasn't being...	commit \| commitdiff \| tree
2010-08-12	pschloss	fixed a trimming bug in sffinfo which occurs when the...	commit \| commitdiff \| tree
2010-08-12	pschloss	fixed int bug in simpson.cpp	commit \| commitdiff \| tree
2010-07-29	pschloss	another attempt to fix sffinfo	commit \| commitdiff \| tree
2010-07-29	pschloss	another pds fix to sffinfo	commit \| commitdiff \| tree
2010-07-29	pschloss	another pds fix to sffinfo	commit \| commitdiff \| tree
2010-07-29	pschloss	pds' small change to sffinfo	commit \| commitdiff \| tree
2010-07-28	pschloss	pat's slight modifications to trim.seqs	commit \| commitdiff \| tree
2010-07-19	pschloss	pat's updates on 7/19/10	commit \| commitdiff \| tree
2010-07-14	pschloss	pat's changes to trim.seqs	commit \| commitdiff \| tree
2010-07-07	pschloss	modified makefile and sensspeccommand files	commit \| commitdiff \| tree
2010-07-06	pschloss	sens.spec changes	commit \| commitdiff \| tree
2010-06-17	pschloss	made a small mod to the alignment parameters in trim...	commit \| commitdiff \| tree
2010-06-12	pschloss	pat's mod to trim.seqs	commit \| commitdiff \| tree
2010-06-09	pschloss	fixed bug in nast:removeextragaps	commit \| commitdiff \| tree
2010-06-09	pschloss	added weightedlinkage.cpp	commit \| commitdiff \| tree
2010-05-26	pschloss	fixed bugs with trim.seqs and bdiffs	commit \| commitdiff \| tree
2010-05-10	pschloss	pds - modified strip barcode funcrtion in trimseqscommand	commit \| commitdiff \| tree
2010-04-14	pschloss	pat's minor edits to distance calculations	commit \| commitdiff \| tree
2010-02-04	pschloss	test	commit \| commitdiff \| tree
2010-02-04	pschloss	pat's ../ bug fix - test	commit \| commitdiff \| tree
2010-02-04	pschloss	pat's ../ bug fix	commit \| commitdiff \| tree
2010-02-02	pschloss	pat's differences before v.1.8	commit \| commitdiff \| tree
2010-01-26	pschloss	pat's edits from 1/26/2010	commit \| commitdiff \| tree
2010-01-19	pschloss	pat's mods to morisitahorn and pre.cluster	commit \| commitdiff \| tree
2009-11-25	pschloss	version for 10.5	commit \| commitdiff \| tree
2009-11-24	pschloss	fixed splash page citation	commit \| commitdiff \| tree
2009-08-10	pschloss	mothur-v.1.5.0	commit \| commitdiff \| tree
2009-07-30	pschloss	pat's changes after generating wiki pages for 1.5	commit \| commitdiff \| tree
2009-07-30	pschloss	pat's edits prior to v.1.5	commit \| commitdiff \| tree
2009-06-23	pschloss	mothur v.1.4.1	commit \| commitdiff \| tree
2009-06-21	pschloss	This is v.1.4.0	commit \| commitdiff \| tree
2009-06-18	pschloss	added an alignreport option to screen seqs	commit \| commitdiff \| tree
2009-06-16	pschloss	a few minor things - pds	commit \| commitdiff \| tree
2009-06-14	pschloss	merged pat's trim seqs edits with sarah's major overhaul...	commit \| commitdiff \| tree
2009-06-08	pschloss	fixed how seq.dists divides the matrix for multiple...	commit \| commitdiff \| tree
2009-06-08	pschloss	added some features to trim.seqs	commit \| commitdiff \| tree
2009-06-07	pschloss	modified trim.seqs command	commit \| commitdiff \| tree
2009-06-06	pschloss	added trim.seqs command	commit \| commitdiff \| tree
2009-06-06	pschloss	added reverse.seqs command	commit \| commitdiff \| tree
2009-06-04	pschloss	remove some files	commit \| commitdiff \| tree
2009-06-04	pschloss	modified filter.seqs to not store all seqs in memory...	commit \| commitdiff \| tree
2009-06-04	pschloss	* empty log message *	commit \| commitdiff \| tree
2009-06-04	pschloss	pat's edits of screen.seqs and summary.seqs	commit \| commitdiff \| tree
2009-06-03	pschloss	fixed a bug in calculating the # of ambig bases	commit \| commitdiff \| tree
2009-06-03	pschloss	added screen.seqs command - pds	commit \| commitdiff \| tree
2009-06-03	pschloss	addition of summary.seq command [pds]	commit \| commitdiff \| tree
2009-05-24	pschloss	This contains Pat's bug fixes and updates. It represents...	commit \| commitdiff \| tree
2009-04-24	pschloss	This is mothur v 1.2.0 - the April ~24, 2009 release	commit \| commitdiff \| tree
2009-04-23	pschloss	more calculator edits and added coverage and whittaker	commit \| commitdiff \| tree
2009-04-22	pschloss	modified some calculators and other stuff - pds	commit \| commitdiff \| tree
2009-04-20	pschloss	pds fixes of heatmap and some other minor stuff	commit \| commitdiff \| tree
2009-04-14	pschloss	* empty log message *	commit \| commitdiff \| tree
2009-03-09	pschloss	changed the ending of the unique fasta sequence file...	commit \| commitdiff \| tree
2009-03-07	pschloss	mucked around some with the output in the unifrac.weighted...	commit \| commitdiff \| tree
2009-03-06	pschloss	fixed parsimony bug	commit \| commitdiff \| tree
2009-02-26	pschloss	fix weighted unifrac bug in findIndex and randomize...	commit \| commitdiff \| tree
2009-02-24	pschloss	print tree debugger	commit \| commitdiff \| tree
2009-02-18	pschloss	fixed bug in read.tree	commit \| commitdiff \| tree
2009-01-30	pschloss	When Pat tried to compile mothur in Ubuntu linux, there...	commit \| commitdiff \| tree
2009-01-28	pschloss	I've changed the listfile, sabundfile, etc. option...	commit \| commitdiff \| tree
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