pat's ../ bug fix - test

diff --git a/alignmentdb.cpp b/alignmentdb.cpp
index 52eedf80cbdc0991249d9eb6deca30e006d665a8..4b89acb464ceccc6fd12d68ab717ece3bcb5dbd3 100644 (file)
--- a/alignmentdb.cpp
+++ b/alignmentdb.cpp
@@ -17,7 +17,7 @@
 AlignmentDB::AlignmentDB(string fastaFileName, string method, int kmerSize, float gapOpen, float gapExtend, float match, float misMatch){              //      This assumes that the template database is in fasta format, may 
        try {                                                                                   //      need to alter this in the future?
                longest = 0;
-               
+               cout << longest;
                ifstream fastaFile;
                openInputFile(fastaFileName, fastaFile);