took out debugging output code from distance calculators

diff --git a/eachgapignore.h b/eachgapignore.h
index 8e027b7d72e33cb27599268f6c779c369ea8bdd6..f6824cf8d3e407dce231f3fc18194cb5f7b8bc0e 100644 (file)
--- a/eachgapignore.h
+++ b/eachgapignore.h
@@ -31,14 +31,14 @@ public:
                for(int i=0;i<alignLength;i++){
                        if(seqA[i] != '.' && seqB[i] != '.' && seqA[i] != '-' && seqB[i] != '-' ){
                                start = i;
-                               cout << "start: " << start << endl;
+//                             cout << "start: " << start << endl;
                                break;
                        }
                }
                for(int i=alignLength-1;i>=0;i--){
                        if(seqA[i] != '.' && seqB[i] != '.' && seqA[i] != '-' && seqB[i] != '-' ){
                                end = i;
-                               cout << "end: " << end << endl;
+//                             cout << "end: " << end << endl;
                                break;
                        }
                }

diff --git a/onegapignore.h b/onegapignore.h
index af284fcc6857a3c5a42545ca6c78c22cded9424d..785272e08c69a3e1491d5d1d2792bbc9ba3eda5d 100644 (file)
--- a/onegapignore.h
+++ b/onegapignore.h
@@ -34,14 +34,14 @@ public:
                for(int i=0;i<alignLength;i++){
                        if(seqA[i] != '.' && seqB[i] != '.' && seqA[i] != '-' && seqB[i] != '-' ){
                                start = i;
-                               cout << "start: " << start << endl;
+//                             cout << "start: " << start << endl;
                                break;
                        }
                }
                for(int i=alignLength-1;i>=0;i--){
                        if(seqA[i] != '.' && seqB[i] != '.' && seqA[i] != '-' && seqB[i] != '-' ){
                                end = i;
-                               cout << "end: " << end << endl;
+//                             cout << "end: " << end << endl;
                                break;
                        }
                }