took cout's from shhh.seqs

diff --git a/shhhercommand.cpp b/shhhercommand.cpp
index b2b4de0559feff2074fb6269b6e18a8dafb9d6e4..6833f5d4c1cae8f4ee0e3b6f3da3bd2474b31285 100644 (file)
--- a/shhhercommand.cpp
+++ b/shhhercommand.cpp
@@ -705,9 +705,6 @@ int ShhherCommand::execute(){
                        unsigned long int begTime = time(NULL);
 
                        
-                       cout << numOTUs << endl;
-                       
-                       
                        m->mothurOut("\nDenoising flowgrams...\n");
                        m->mothurOut("iter\tmaxDelta\tnLL\t\tcycletime\n");
                        
@@ -1282,12 +1279,6 @@ void ShhherCommand::getOTUData(string listFileName){
                
                listFile.close();       
                
-               for(int i=0;i<seqNumber.size();i++){
-                       cout << seqNumber[i] << ' ';
-               }
-               cout << endl;
-               
-               
        }
        catch(exception& e) {
                m->errorOut(e, "ShhherCommand", "getOTUData");
@@ -1308,8 +1299,6 @@ void ShhherCommand::initPyroCluster(){
                nSeqsBreaks.assign(processors+1, 0);
                nOTUsBreaks.assign(processors+1, 0);
 
-               cout << numSeqs << '\t' << numOTUs << '\t' << processors << endl;
-               
                nSeqsBreaks[0] = 0;
                for(int i=0;i<processors;i++){
                        nSeqsBreaks[i+1] = nSeqsBreaks[i] + (int)((double) numSeqs / (double) processors);
@@ -1408,10 +1397,7 @@ void ShhherCommand::calcCentroidsDriver(int start, int finish){
        
        try{
                
-//             for(int i=0;i<seqNumber.size();i++){
-//                     cout << seqNumber[i] << ' ';
-//             }cout << endl;
-               
+       
                for(int i=start;i<finish;i++){
                        
                        double count = 0;