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fixed rf memory issue in constructure
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2012-11-02 Sarah Westcottfix to summary.tax for 1.28.0
2012-10-30 Sarah WestcottMerge remote-tracking branch 'origin/master'
2012-10-30 Sarah Westcottclassify.seqs allows sequences to be in taxonomy file...
2012-10-26 Kathryn Iversonadded new class forest
2012-10-22 Sarah WestcottMerge remote-tracking branch 'origin/master'
2012-10-22 Pat SchlossMerge remote-tracking branch 'mothur/master'
2012-10-03 Sarah Westcottadded zap method to classify.seqs and changed bayesian...
2012-10-02 Sarah Westcottadded classify.shared command and random forest files...
2012-09-07 Sarah Westcottmajor change to the tree class to use the count table...
2012-08-14 Sarah Westcottadded code to format fast files for uchime. started...
2012-08-08 Sarah Westcottadded SequenceCountParser class to parse the count...
2012-07-30 Pat SchlossMerge remote-tracking branch 'mothur/master'
2012-07-27 Sarah Westcottadded sparseDistanceMatrix class. Modified cluster...
2012-07-03 Kathryn IversonMerge branch 'master' of https://github.com/mothur...
2012-07-03 Sarah Westcottchanges while testing 1.26
2012-06-28 Sarah Westcottadded countable class to read and store count file...
2012-06-19 Sarah Westcottadded load.logfile command. changed summary.single...
2012-06-07 Pat SchlossMerge remote-tracking branch 'mothur/master'
2012-06-07 Pat Schlossdunno
2012-05-31 Pat SchlossMerge remote-tracking branch 'mothur/master'
2012-05-21 Sarah Westcottadded get.otulabels and remove.otulabels commands per...
2012-05-16 Kathryn IversonMerge branch 'master' of https://github.com/mothur...
2012-05-15 Sarah Westcottadded list.labels command. started work on make.contigs...
2012-05-14 Sarah Westcottfixed bug in make.biom that occurred if some taxonomies...
2012-05-14 Sarah WestcottMerge remote-tracking branch 'origin/master'
2012-05-14 John Westcotttrying to clean up project files path issues
2012-05-14 Pat Schlossfixing pbxproj
2012-05-14 Pat SchlossMerge remote-tracking branch 'mothur/master'
2012-05-10 Sarah Westcottadded abundance and sample parameters to get.coremicrob...
2012-05-09 Sarah Westcottworking on get.coremicrobiom
2012-05-09 John WestcottMerge remote-tracking branch 'origin/master'
2012-05-09 John Westcottadded debug flag to mothurOut. added debug parameter...
2012-05-02 Sarah WestcottRevert to previous commit
2012-05-02 Sarah Westcottmoved mothur's source into a folder to make grabbing...
2012-05-02 Sarah Westcottremoving chime source files from mother project.
2012-05-01 Pat SchlossMerge remote-tracking branch 'mothur/master'
2012-04-27 Sarah WestcottMerge remote-tracking branch 'mothur/master'
2012-04-27 Sarah Westcottchanges while testing.
2012-04-17 Sarah Westcottadded make.biom command
2012-04-13 Sarah Westcottadded tree reader class to handle reading trees. Rewor...
2012-04-10 Pat SchlossMerge remote-tracking branch 'mothur/master'
2012-04-05 Sarah Westcottadded subsample, tiers and processors to tree.shared...
2012-04-04 Pat SchlossMerge remote-tracking branch 'mothur/master'
2012-04-03 Sarah Westcottfixed bug in corr.axes so that it now uses the shared...
2012-04-03 Sarah Westcottworking on adding subsampling to dist.shared. fixed...
2012-03-28 Sarah Westcottminor changes to pcr.seqs. Added filterToPos and filte...
2012-03-27 Sarah Westcottadded pcr.seqs command. fixed bug in rarefacftion.singl...
2012-03-13 Sarah Westcottadded unix to ifdefs. minor changes while testing 1...
2012-03-02 Sarah Westcottadded cooccurence command
2012-02-20 Sarah Westcottremoved unused copy constructors and comments within...
2012-02-06 Sarah WestcottMerge remote-tracking branch 'mothur/master'
2012-02-06 Sarah Westcottadded sort.seqs command. puts sequences from a fasta...
2012-02-03 Pat Schlossupped the optimization code for debugging from -O0...
2012-01-30 Sarah Westcotttest ignore
2012-01-30 Sarah Westcotttest
2012-01-30 Sarah Westcotttest
2012-01-30 Sarah Westcotttest
2012-01-30 Sarah Westcottadded test comment
2012-01-25 westcottadded otu.association command. added calcSpearman,...
2012-01-19 westcottfixed bug with shhh.flow from file path name in write...
2012-01-09 westcott1.23.0
2011-12-23 westcottadded qvalues to metastats. fixed bug with chimera...
2011-11-29 westcottAdded summary.qual command. Added fontsize parameter...
2011-11-11 westcottfixed bug with trim.flows that was adding flow files...
2011-11-07 westcottworking on chimera.perseus. made removeConfidences...
2011-10-18 westcott1.22.0
2011-10-11 pschlosscamberra fix
2011-09-23 westcottadded summary.tax command and fixed bug with root level...
2011-09-13 westcottworking on windows paralellization, added trimOligos...
2011-08-22 westcottadded multiple processors option for Windows users...
2011-08-09 westcottadded count.groups command and paralellized align.seqs...
2011-07-20 westcott1.21.0
2011-07-15 westcottrewrote metastats command in c++, added mothurRemove...
2011-07-06 westcottadded save parameter to align.seqs, chimera commands...
2011-06-28 westcottindicator command
2011-06-17 westcott1.20.0
2011-06-01 westcottadded count.seqs command and made some modifcations...
2011-05-27 westcottadded deunique.tree command
2011-05-16 westcottadded chimera.uchime
2011-05-11 westcottworking on citations
2011-05-09 westcott1.19.0
2011-05-06 westcottfixed template=self thing
2011-05-04 westcottchimera.slayer
2011-04-25 westcottfixed ties issue in maligner getBlastSeqs
2011-04-20 pschlosssome alterations to chimera.slayer
2011-04-18 westcottmodified chimera.slayer template=self
2011-04-15 westcott1.18.1
2011-04-11 westcott1.18.0 - fixed make.shared abort issue
2011-04-08 westcottfixing bugs while testing
2011-04-07 westcottfixed bug with tree reading
2011-04-06 westcottadded getCommandInfoCommand for gui
2011-04-06 westcottremoved read.dist, read.otu, read.tree and globaldata...
2011-03-16 westcottadded set.current and get.current commands and modified...
2011-03-15 westcottadding current file class
2011-03-11 westcottadded namefile to summary.seqs
2011-03-07 pschlossfix trim.seqs / qualscores bug
2011-03-04 westcottbug fixes
2011-03-03 pschlossmodified seqerror and qualscores
2011-02-28 westcottfixed unweighted command
2011-02-26 pschlosssome minor changes
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