2012-09-25 |
Sarah Westcott | added count file to get.oturep, pre.cluster, screen... |
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2012-09-14 |
Sarah Westcott | added count file to trim.seqs, get.groups, get.lineage... |
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2012-09-12 |
Sarah Westcott | optimizing classify.seqs calculating of template probab... |
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2012-09-07 |
Sarah Westcott | major change to the tree class to use the count table... |
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2012-08-21 |
Sarah Westcott | added oligos, pdiffs, bdiffs, ldiffs, sdiffs, tiffs... |
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2012-08-06 |
Sarah Westcott | changes while testing 1.27 |
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2012-08-01 |
Sarah Westcott | paralellized chop.seqs |
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2012-07-27 |
Sarah Westcott | added sparseDistanceMatrix class. Modified cluster... |
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2012-07-11 |
Sarah Westcott | Merge remote-tracking branch 'origin/master' |
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2012-07-11 |
Sarah Westcott | added debug statements to trim.seqs |
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2012-06-19 |
Sarah Westcott | added load.logfile command. changed summary.single... |
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2012-06-12 |
Sarah Westcott | changed reading of name file to use buffered reads... |
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2012-06-05 |
Sarah Westcott | added forward and reverse barcodes to trim.seqs to... |
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2012-05-02 |
Sarah Westcott | Revert to previous commit |
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2012-05-02 |
Sarah Westcott | moved mothur's source into a folder to make grabbing... |
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2012-05-01 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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2012-04-11 |
Sarah Westcott | fixed bug with windows version of trim.seqs when run... |
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2012-04-11 |
Sarah Westcott | added subsample and consensus parameters to unifrac... |
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2012-04-04 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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2012-03-27 |
Sarah Westcott | initialized numLinkers and numSpacers in trim.seqs... |
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2012-03-27 |
Sarah Westcott | added pcr.seqs command. fixed bug in rarefacftion.singl... |
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2012-03-13 |
Sarah Westcott | added unix to ifdefs. minor changes while testing 1... |
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2012-03-06 |
Sarah Westcott | changed sffinfo flow default to true. fixed bug in... |
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2012-02-24 |
Sarah Westcott | added linker and spacer to trim.flows |
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2012-02-24 |
Sarah Westcott | paralellized trim.seqs for windows. fixed bug in trim... |
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2012-02-20 |
Sarah Westcott | removed unused copy constructors and comments within... |
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2012-01-19 |
westcott | fixed bug with shhh.flow from file path name in write... |
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2012-01-04 |
westcott | 1.23.0 |
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2011-12-23 |
westcott | added qvalues to metastats. fixed bug with chimera... |
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2011-12-06 |
westcott | metastats in progress |
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2011-09-13 |
westcott | working on windows paralellization, added trimOligos... |
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2011-07-18 |
westcott | changed normalize.shared and sub.sample commands to... |
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2011-07-15 |
westcott | rewrote metastats command in c++, added mothurRemove... |
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2011-06-28 |
westcott | small bug with trimming of quality scores over a window... |
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2011-06-14 |
westcott | working on current change |
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2011-06-14 |
westcott | working on current change |
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2011-05-27 |
westcott | captured stdout from system command, fixed bug in trim... |
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2011-05-24 |
westcott | paralellized seq.error and dist.shared added some error... |
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2011-05-20 |
westcott | finished adding the names option to trim.seqs |
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2011-05-18 |
westcott | added name option to trim.seqs |
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2011-05-18 |
westcott | fixed bug with trim.seqs allfiles=t |
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2011-05-18 |
westcott | fixed bug with trim.seqs allfiles=t |
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2011-05-11 |
westcott | working on citations |
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2011-05-10 |
westcott | added citation function to commands |
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2011-05-09 |
westcott | 1.19.0 |
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2011-05-09 |
westcott | 1.19.0 |
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2011-05-04 |
westcott | trim.seqs fix of gobble |
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2011-04-06 |
westcott | added getCommandInfoCommand for gui |
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2011-04-06 |
westcott | removed read.dist, read.otu, read.tree and globaldata... |
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2011-03-30 |
westcott | fixed problem with sffinfo that caused a file mismatch... |
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2011-03-22 |
westcott | fixed trim.seqs group counts by adding back in the... |
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2011-03-16 |
westcott | added set.current and get.current commands and modified... |
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2011-03-07 |
pschloss | fix trim.seqs / qualscores bug |
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2011-03-04 |
westcott | worked on trim.seqs - added in the groupfiles for allfi... |
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2011-03-04 |
westcott | worked on trim.seqs - added in the groupfiles for allfi... |
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2011-03-04 |
westcott | bug fixes |
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2011-02-23 |
westcott | fixed bug in unifrac commands with unrooted trees |
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2011-02-10 |
pschloss | modified reverse.seqs and qualscores.cpp |
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2011-02-09 |
pschloss | mods to trim.seqs |
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2011-02-09 |
pschloss | mods to trim.seqs |
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2011-02-08 |
westcott | added [ERROR] flag if command aborts |
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2011-02-08 |
westcott | added homova command |
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2011-01-25 |
westcott | mods for 1.16 |
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2011-01-14 |
westcott | fixed trim.seqs bug with qtrim parameter and added... |
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2011-01-05 |
westcott | removed various build warnings |
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2010-12-31 |
pschloss | added shhh.seqs command |
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2010-12-23 |
pschloss | addition of trim.flows |
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2010-12-22 |
westcott | fixed trim.seqs weird characters thing |
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2010-12-20 |
pschloss | pat's changes to seq.error command |
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2010-12-17 |
westcott | fixed bug with trim.seqs- when a file is blank for... |
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2010-12-08 |
westcott | get.oturep change and trim.seqs fix |
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2010-12-07 |
westcott | consensus.seqs can now find a consensus on a whole... |
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2010-12-07 |
westcott | fixed indicator grouping problem |
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2010-12-06 |
westcott | modified trim.seqs to speed up the append with multiple... |
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2010-11-22 |
westcott | added group option to trim.seqs so you can provide... |
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2010-11-05 |
westcott | cluster.split fix |
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2010-11-02 |
westcott | fixed bug with normalize.shared, printed out numbins... |
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2010-10-26 |
westcott | fixes while testing |
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2010-10-19 |
westcott | fixed phylo.diversity and made trim.seqs with allfiles... |
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2010-10-15 |
westcott | added pipeline commands which involved change to comman... |
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2010-09-17 |
westcott | bug fixes |
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2010-09-08 |
westcott | testing 1.13.0 |
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2010-09-04 |
westcott | working on testing for 1.13 |
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2010-09-03 |
westcott | working on testing |
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2010-08-30 |
westcott | sped up unifrac weighted. |
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2010-08-24 |
westcott | moved utilities out of mothur.h and into mothurOut... |
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2010-08-20 |
westcott | pre.cluster |
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2010-08-20 |
westcott | changed file divide for trim.seqs |
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2010-07-28 |
pschloss | pat's slight modifications to trim.seqs |
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2010-07-22 |
westcott | fixes while testing 1.12.0 |
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2010-07-14 |
pschloss | pat's changes to trim.seqs |
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2010-07-14 |
westcott | started work on sffinfo command. fixed bug across... |
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2010-07-06 |
pschloss | sens.spec changes |
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2010-07-06 |
westcott | fixed trim.seqs bug |
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2010-07-06 |
westcott | rechecking in |
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2010-07-06 |
westcott | trim.seqs couts |
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2010-06-30 |
westcott | modified trim.seqs to split by primer name if primer... |
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2010-06-18 |
westcott | removed blast files generated by chimera.slayer, altere... |
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2010-06-18 |
westcott | fixed problem with trim.seqs writing over files if... |
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2010-06-17 |
pschloss | made a small mod to the alignment parameters in trim... |
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