| 2009-05-04 |
westcott | added concensus command and updated calcs
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commit | commitdiff | tree |
| 2009-05-04 |
westcott | added concensus command
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commit | commitdiff | tree |
| 2009-04-22 |
westcott | changed heatmap and venn command to use vector of sharedrabu...
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commit | commitdiff | tree |
| 2009-04-21 |
westcott | broke apart read matrix file
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commit | commitdiff | tree |
| 2009-04-21 |
westcott | fixed bug with get.oturep and fixed problem with errorchecko...
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commit | commitdiff | tree |
| 2009-04-21 |
westcott | fixed bug with parsimony(groups=all) and unifrac.unweighted...
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commit | commitdiff | tree |
| 2009-04-21 |
westcott | fixed bug in venn command which caused error when user...
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commit | commitdiff | tree |
| 2009-04-17 |
westcott | added bootstrap.shared command and fixed some bugs...
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commit | commitdiff | tree |
| 2009-04-14 |
westcott | removed "shared" from some of the calculator names...
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commit | commitdiff | tree |
| 2009-04-14 |
westcott | added log10 and log2 scalers for heatmap
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commit | commitdiff | tree |
| 2009-04-14 |
westcott | started shared utilities, updates to venn and heatmap...
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commit | commitdiff | tree |
| 2009-04-08 |
westcott | fixed bug in read.tree updates help and validparameters...
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commit | commitdiff | tree |
| 2009-04-06 |
westcott | added get.oturep command
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commit | commitdiff | tree |
| 2009-04-06 |
westcott | fixed memory leak in parsimony calculator and added...
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commit | commitdiff | tree |
| 2009-04-03 |
westcott | venn command with up to 4 groups using sharedsobs,...
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commit | commitdiff | tree |
| 2009-04-02 |
westcott | venn command with up to 4 groups
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commit | commitdiff | tree |
| 2009-03-31 |
westcott | started venn command
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commit | commitdiff | tree |
| 2009-03-30 |
westcott | made sorting optional but sort by default, in case...
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commit | commitdiff | tree |
| 2009-03-30 |
westcott | added sort to heatmap to put shared otus at the top...
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commit | commitdiff | tree |
| 2009-03-27 |
westcott | fixed reference issue
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commit | commitdiff | tree |
| 2009-03-27 |
westcott | added heatmap command
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commit | commitdiff | tree |
| 2009-03-27 |
westcott | added heatmap command
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commit | commitdiff | tree |
| 2009-03-26 |
westcott | heatmap
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commit | commitdiff | tree |
| 2009-03-25 |
westcott | started heatmap command
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commit | commitdiff | tree |
| 2009-03-24 |
westcott | added sharedbraycurtis, sharedmorisirahorn, sharedkulczynski...
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commit | commitdiff | tree |
| 2009-03-23 |
westcott | added sharedochiai and sharedanderberg calculators
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commit | commitdiff | tree |
| 2009-03-23 |
westcott | fixed libshuff signif. values
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commit | commitdiff | tree |
| 2009-03-23 |
westcott | put back no command and worked on libshuff
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commit | commitdiff | tree |
| 2009-03-20 |
westcott | removed no command because it is never called now that...
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commit | commitdiff | tree |
| 2009-03-20 |
westcott | documentation
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commit | commitdiff | tree |
| 2009-03-19 |
westcott | fixed memory leak globaldata container structures,...
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commit | commitdiff | tree |
| 2009-03-19 |
westcott | fixed memory leak of groupmap in reads
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commit | commitdiff | tree |
| 2009-03-19 |
westcott | updated errorchecking so it checks if the parameter...
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commit | commitdiff | tree |
| 2009-03-19 |
westcott | libshuff and updated help to include libshuff and modificati...
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commit | commitdiff | tree |
| 2009-03-18 |
westcott | working on libshuff
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commit | commitdiff | tree |
| 2009-03-16 |
westcott | added nseqs and sharednseqs calculators, removed excess...
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commit | commitdiff | tree |
| 2009-03-10 |
westcott | working on libshuff
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commit | commitdiff | tree |
| 2009-03-09 |
westcott | added abs() to weighted and unweighted to account for...
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commit | commitdiff | tree |
| 2009-03-09 |
westcott | fixed bug in read.tree
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commit | commitdiff | tree |
| 2009-03-09 |
westcott | fixed bug in summary.shared for groups
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commit | commitdiff | tree |
| 2009-03-09 |
westcott | fixed bug with line and label parameters and added...
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commit | commitdiff | tree |
| 2009-03-09 |
westcott | deleted read.shared command and added its functionality...
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commit | commitdiff | tree |
| 2009-03-09 |
westcott | added ability for user to select which groups to analyze...
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commit | commitdiff | tree |
| 2009-03-09 |
westcott | fixed outputs in unifrac to look the same
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commit | commitdiff | tree |
| 2009-03-09 |
westcott | fixed memory issue with cluster command
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commit | commitdiff | tree |
| 2009-03-09 |
westcott | fixed valid parameters to include shared parameter...
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commit | commitdiff | tree |
| 2009-03-06 |
westcott | got rid of rd_parsimony ext.
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commit | commitdiff | tree |
| 2009-03-06 |
westcott | fixed bug wit unifrac files
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commit | commitdiff | tree |
| 2009-03-06 |
westcott | added full matrix files
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commit | commitdiff | tree |
| 2009-03-06 |
westcott | fixed bug in random option of parsimony()
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commit | commitdiff | tree |
| 2009-03-06 |
westcott | changed format of output in unifrac and parsimony files
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commit | commitdiff | tree |
| 2009-03-06 |
westcott | fixed bug in read tree
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commit | commitdiff | tree |
| 2009-03-06 |
westcott | fixed bug in read tree
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commit | commitdiff | tree |
| 2009-03-05 |
westcott | working on readtree
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commit | commitdiff | tree |
| 2009-03-04 |
westcott | unifrac.weighted
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commit | commitdiff | tree |
| 2009-03-03 |
westcott | parsimony output changed
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commit | commitdiff | tree |
| 2009-03-03 |
westcott | unifrac.unweighted command changes
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commit | commitdiff | tree |
| 2009-03-02 |
westcott | worked on unifrac.unweighted()
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commit | commitdiff | tree |
| 2009-03-02 |
westcott | fixed bug in unweighted
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commit | commitdiff | tree |
| 2009-02-27 |
westcott | fixed parsimony with groups and worked on unifrac.unweighted...
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commit | commitdiff | tree |
| 2009-02-26 |
westcott | parsimony with groups
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commit | commitdiff | tree |
| 2009-02-26 |
westcott | parsimony with groups
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commit | commitdiff | tree |
| 2009-02-26 |
westcott | weightedcommand
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commit | commitdiff | tree |
| 2009-02-24 |
westcott | changed unifrac.weighted()
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commit | commitdiff | tree |
| 2009-02-24 |
westcott | changed unifrac.weighted()
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commit | commitdiff | tree |
| 2009-02-24 |
westcott | changed unifrac.weighted()
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commit | commitdiff | tree |
| 2009-02-24 |
westcott | test
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commit | commitdiff | tree |
| 2009-02-24 |
westcott | parsimony fix
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commit | commitdiff | tree |
| 2009-02-23 |
westcott | fixed parsimony for groups
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commit | commitdiff | tree |
| 2009-02-23 |
westcott | fixed parsimony for groups
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commit | commitdiff | tree |
| 2009-02-23 |
westcott | fixed unweighted calculator
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commit | commitdiff | tree |
| 2009-02-20 |
westcott | fixed unweighted calculator
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commit | commitdiff | tree |
| 2009-02-19 |
westcott | added mothur.h and fixed includes in many files
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commit | commitdiff | tree |
| 2009-02-19 |
westcott | fixed linking error in collect, collectshared, and...
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commit | commitdiff | tree |
| 2009-02-18 |
westcott | Johns fix
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commit | commitdiff | tree |
| 2009-02-18 |
westcott | parsimony command now uses groups, fixed bug with unweighted...
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commit | commitdiff | tree |
| 2009-02-18 |
westcott | parsimony command now uses groups, fixed bug with unweighted...
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commit | commitdiff | tree |
| 2009-02-18 |
westcott | changed unweighted and weighted score cumulatives to...
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commit | commitdiff | tree |
| 2009-02-18 |
westcott | fixed bug in fastmap readFastaFile so that if there...
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commit | commitdiff | tree |
| 2009-02-18 |
westcott | minor bugs fixes and added line and label options to...
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commit | commitdiff | tree |
| 2009-02-13 |
westcott | minor error checking fixes
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commit | commitdiff | tree |
| 2009-02-13 |
westcott | added read.shared, broke up globaldata a bit
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commit | commitdiff | tree |
| 2009-02-12 |
westcott | fixed bug with displaying info for collect.shared(...
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commit | commitdiff | tree |
| 2009-02-11 |
westcott | added errorchecking and help info on new unifrac and...
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commit | commitdiff | tree |
| 2009-02-11 |
westcott | adding treeclimber and unifrac pieces
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commit | commitdiff | tree |
| 2009-01-29 |
westcott | changed all files to be relative to project instead...
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commit | commitdiff | tree |
| 2009-01-29 |
westcott | rarefaction.shared() fixed bug
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commit | commitdiff | tree |
| 2009-01-28 |
westcott | fixed line and label bug.
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commit | commitdiff | tree |
| 2009-01-28 |
westcott | updated help
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commit | commitdiff | tree |
| 2009-01-28 |
westcott | rarefaction default bug
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commit | commitdiff | tree |
| 2009-01-28 |
westcott | fixed parameter issues
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commit | commitdiff | tree |
| 2009-01-28 |
westcott | collect.single bug in readphil.
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commit | commitdiff | tree |
| 2009-01-26 |
westcott | fixed summary.shared bug and set jumble default to 1.
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commit | commitdiff | tree |
| 2009-01-23 |
westcott | fixed bug in sharedcommand and parselistcommand and...
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commit | commitdiff | tree |
| 2009-01-22 |
westcott | finishing the container classes, combining read.otu...
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commit | commitdiff | tree |
| 2009-01-21 |
westcott | deconvolute command
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commit | commitdiff | tree |
| 2009-01-20 |
westcott | changed read.shared to read.list and incorporated the...
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commit | commitdiff | tree |
| 2009-01-16 |
westcott | Initial revision
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commit | commitdiff | tree |
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