//read through file
while (getline(in, line)) {
- if (isalnum(line.at(0))){ //if it's a sequence line
- sequence += line;
- }
- else{
+ if (line != "") {
+ if (isalnum(line.at(0))) { //if it's a sequence line
+ sequence += line;
+ }
+ else{
//input sequence info into map
- it = data.find(sequence);
- if (it == data.end()) { //it's unique.
- data[sequence].groupname = name; //group name will be the name of the first duplicate sequence found.
- data[sequence].groupnumber = 1;
- data[sequence].names = name;
- }else { // its a duplicate.
- data[sequence].names += "," + name;
- data[sequence].groupnumber++;
+ it = data.find(sequence);
+ if (it == data.end()) { //it's unique.
+ data[sequence].groupname = name; //group name will be the name of the first duplicate sequence found.
+ data[sequence].groupnumber = 1;
+ data[sequence].names = name;
+ }else { // its a duplicate.
+ data[sequence].names += "," + name;
+ data[sequence].groupnumber++;
+ }
+ name = (line.substr(1, (line.npos))); //The line you just read is a new name so rip off '>'
+ sequence = "";
}
- name = (line.substr(1, (line.npos))); //The line you just read is a new name so rip off '>'
- sequence = "";
}
}