git.donarmstrong.com Git - biopieces.git/history

]> git.donarmstrong.com Git - biopieces.git/history - bp_test

2013-11-25	martinahansen	fixed encoding bug in read_454	tree \| commitdiff
2013-10-25	martinahansen	added -o and -x to analyze_vals	tree \| commitdiff
2013-10-16	martinahansen	cleanup of analyze_vals added analyze_scores	tree \| commitdiff
2013-10-15	martinahansen	rewrote analyze_vals	tree \| commitdiff
2013-10-15	martinahansen	rewrote write_tab	tree \| commitdiff
2013-10-08	martinahansen	refactoring of assemble_pairs	tree \| commitdiff
2013-09-26	martinahansen	added prefix option to write_fasta_files and write_fast...	tree \| commitdiff
2013-09-25	martinahansen	added bzip2-ruby gem requirement	tree \| commitdiff
2013-09-25	martinahansen	added gzip/bzip2 output option to write_fastq_files	tree \| commitdiff
2013-09-25	martinahansen	added support for gzip/bzip2 in write_fasta_files ...	tree \| commitdiff
2013-09-25	martinahansen	ported write_fasta to ruby enabling bzip2 support	tree \| commitdiff
2013-09-25	martinahansen	added bzip output test to write_fastq	tree \| commitdiff
2013-09-23	martinahansen	created find_orphans Biopiece	tree \| commitdiff
2013-09-16	martinahansen	fixed overlap bug in patscan_seq	tree \| commitdiff
2013-09-09	martinahansen	fixing usearch upgrade	tree \| commitdiff
2013-09-06	martinahansen	upgraded uclust_seq to support usearch7	tree \| commitdiff
2013-06-04	martinahansen	added missing files	tree \| commitdiff
2013-06-04	martinahansen	revamped find_homopolymers	tree \| commitdiff
2013-04-11	martinahansen	added index_vals biopiece	tree \| commitdiff
2013-03-16	martinahansen	changed upper/lower case output in assemble_pairs	tree \| commitdiff
2013-03-13	martinahansen	dropped pandaseq requirement	tree \| commitdiff
2013-03-13	martinahansen	upgraded tests of read_sff	tree \| commitdiff
2013-03-13	martinahansen	finish assemble_pairs revamp	tree \| commitdiff
2013-03-08	martinahansen	added split_pair_seq biopiece	tree \| commitdiff
2013-03-08	martinahansen	added new Biopiece merge_pair_seq	tree \| commitdiff
2013-03-08	martinahansen	dropped cat_seq Biopieces since join_seq exists	tree \| commitdiff
2013-03-08	martinahansen	added pair-end power to read_fastq	tree \| commitdiff
2013-03-08	martinahansen	rewrite of FASTQ internals	tree \| commitdiff
2013-02-28	martinahansen	updated find_SNPs tests	tree \| commitdiff
2013-02-25	martinahansen	fixed SCORE_BASE global var	tree \| commitdiff
2013-01-21	martinahansen	added pandaseq prerequisite	tree \| commitdiff
2013-01-21	martinahansen	added tests for assemble_pairs biopiece	tree \| commitdiff
2013-01-20	martinahansen	added substitute_vals biopiece	tree \| commitdiff
2013-01-14	martinahansen	added tests for create_seq_index and get_seq	tree \| commitdiff
2013-01-04	martinahansen	updated pcr_seq and added tests	tree \| commitdiff
2012-11-02	martinahansen	added tests for find_pairs	tree \| commitdiff
2012-09-27	martinahansen	upgraded kmer_freq test	tree \| commitdiff
2012-09-27	martinahansen	removed kmer_freq test files	tree \| commitdiff
2012-09-04	martinahansen	fixed bug in clip_adaptor where LEFT_POS > RIGHT_POS	tree \| commitdiff
2012-09-03	martinahansen	updated testing files for find_adaptor and clip_adaptor	tree \| commitdiff
2012-07-02	martinahansen	updated order_pairs	tree \| commitdiff
2012-06-29	martinahansen	clean-up of ruby code to remove rake warnings	tree \| commitdiff
2012-06-29	martinahansen	rewrote mean_scores to fix bug	tree \| commitdiff
2012-06-01	martinahansen	added illumina 1.8 name scheme support to order pairs	tree \| commitdiff
2012-05-25	martinahansen	fixed trim_seq tests	tree \| commitdiff
2012-05-24	martinahansen	upgraded trim_seq	tree \| commitdiff
2012-04-11	martinahansen	ported write_fastq to ruby and allowed different encodi...	tree \| commitdiff
2012-04-10	martinahansen	upgraded tests for read_fastq	tree \| commitdiff
2012-04-10	martinahansen	removing stale test in files	tree \| commitdiff
2012-03-26	martinahansen	fixed ugly 1-off bug in locator	tree \| commitdiff
2012-03-26	martinahansen	fixed ugly 1-off bug in locator.rb	tree \| commitdiff
2012-02-23	martinahansen	added duplicate_record biopiece	tree \| commitdiff
2011-12-12	martinahansen	add tests for read_embl	tree \| commitdiff
2011-12-08	martinahansen	added replace_vals biopiece	tree \| commitdiff
2011-12-07	martinahansen	added new biopeice remove_indel_columns	tree \| commitdiff
2011-12-05	martinahansen	upgraded mask_seq	tree \| commitdiff
2011-11-21	martinahansen	added tests for uclust_seq	tree \| commitdiff
2011-11-17	martinahansen	added tests to remove_primers	tree \| commitdiff
2011-11-17	martinahansen	added requirement of RubyInline	tree \| commitdiff
2011-10-27	martinahansen	removed biopieces find_mids remove_mids read_solexa	tree \| commitdiff
2011-10-25	martinahansen	added find_barcodes biopiece	tree \| commitdiff
2011-10-20	martinahansen	ported trim_seq to ruby and added tests	tree \| commitdiff
2011-10-12	martinahansen	adding tests for write_fastq_files	tree \| commitdiff
2011-10-12	martinahansen	evil sort fix needed for assert_no_diff_dir	tree \| commitdiff
2011-10-12	martinahansen	fixed .svn dir issue with assert_no_diff_dir	tree \| commitdiff
2011-10-12	martinahansen	added tests for write_fasta_files	tree \| commitdiff
2011-10-12	martinahansen	fortified test.sh	tree \| commitdiff
2011-10-12	martinahansen	fortified assert_no_diff_dir function	tree \| commitdiff
2011-10-12	martinahansen	added assert_no_diff_dir function to test code	tree \| commitdiff
2011-09-29	martinahansen	added delimiter to join_seq	tree \| commitdiff
2011-09-20	martinahansen	updated patscan_seq	tree \| commitdiff
2011-09-06	martinahansen	rewrote remove_mids again	tree \| commitdiff
2011-09-06	martinahansen	fixed bug in remove_mids	tree \| commitdiff
2011-09-06	martinahansen	added tests to remove_mids	tree \| commitdiff
2011-09-05	martinahansen	updated remove_mids	tree \| commitdiff
2011-09-01	martinahansen	fixed bug in find_SNPs	tree \| commitdiff
2011-09-01	martinahansen	added tests for find_SNPs	tree \| commitdiff
2011-07-04	martinahansen	s/Checking/Testing	tree \| commitdiff
2011-07-04	martinahansen	fixed typo	tree \| commitdiff
2011-07-04	martinahansen	fixed typo	tree \| commitdiff
2011-07-04	martinahansen	fixed typo	tree \| commitdiff
2011-07-03	martinahansen	added warnings to bp_test	tree \| commitdiff
2011-07-03	martinahansen	added warnings to bp_test	tree \| commitdiff
2011-06-15	martinahansen	added tests for rename_keys	tree \| commitdiff
2011-06-15	martinahansen	changed testing log file name	tree \| commitdiff
2011-06-15	martinahansen	added tests for blast_seq_pair	tree \| commitdiff
2011-06-08	martinahansen	added tests for remove_keys	tree \| commitdiff
2011-06-08	martinahansen	added tests for remove_indels	tree \| commitdiff
2011-06-08	martinahansen	added tests for reverse_seq	tree \| commitdiff
2011-06-08	martinahansen	added tests for complement_seq	tree \| commitdiff
2011-06-06	martinahansen	fixed cat_seq	tree \| commitdiff
2011-06-06	martinahansen	added cat_seq biopiece	tree \| commitdiff
2011-06-05	martinahansen	shortened messages in test suite	tree \| commitdiff
2011-06-05	martinahansen	added tests for uniq_vals	tree \| commitdiff
2011-06-05	martinahansen	added tests for sort_records	tree \| commitdiff
2011-06-04	martinahansen	added tests for transliterate_vals	tree \| commitdiff
2011-06-04	martinahansen	added tests for transliterate_seq	tree \| commitdiff
2011-06-03	martinahansen	added tests for length_vals	tree \| commitdiff
2011-06-03	martinahansen	added test for calc_bit_scores	tree \| commitdiff
2011-05-30	martinahansen	upgraded mean_scores	tree \| commitdiff
next

Mirror (and my branches) of biopieces http://www.biopieces.org/

RSS Atom