+++ /dev/null
-#!/usr/bin/env ruby
-
-# Copyright (C) 2007-2010 Martin A. Hansen.
-
-# This program is free software; you can redistribute it and/or
-# modify it under the terms of the GNU General Public License
-# as published by the Free Software Foundation; either version 2
-# of the License, or (at your option) any later version.
-
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
-# GNU General Public License for more details.
-
-# You should have received a copy of the GNU General Public License
-# along with this program; if not, write to the Free Software
-# Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
-
-# http://www.gnu.org/copyleft/gpl.html
-
-# >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
-
-# This program is part of the Biopieces framework (www.biopieces.org).
-
-# >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> DESCRIPTION <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
-
-# Find and count MID tags in sequences in the stream.
-
-# >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
-
-
-require 'maasha/biopieces'
-
-MID_LEN = 10
-
-mids = %w{ ACGAGTGCGT ACGCTCGACA AGACGCACTC AGCACTGTAG ATCAGACACG
- ATATCGCGAG CGTGTCTCTA CTCGCGTGTC TAGTATCAGC TCTCTATGCG
- TGATACGTCT TACTGAGCTA CATAGTAGTG CGAGAGATAC ATACGACGTA
- TCACGTACTA CGTCTAGTAC TCTACGTAGC TGTACTACTC ACGACTACAG
- CGTAGACTAG TACGAGTATG TACTCTCGTG TAGAGACGAG TCGTCGCTCG
- ACATACGCGT ACGCGAGTAT ACTACTATGT ACTGTACAGT AGACTATACT
- AGCGTCGTCT AGTACGCTAT ATAGAGTACT CACGCTACGT CAGTAGACGT
- CGACGTGACT TACACACACT TACACGTGAT TACAGATCGT TACGCTGTCT
- TAGTGTAGAT TCGATCACGT TCGCACTAGT TCTAGCGACT TCTATACTAT
- TGACGTATGT TGTGAGTAGT ACAGTATATA ACGCGATCGA ACTAGCAGTA
- AGCTCACGTA AGTATACATA AGTCGAGAGA AGTGCTACGA CGATCGTATA
- CGCAGTACGA CGCGTATACA CGTACAGTCA CGTACTCAGA CTACGCTCTA
- CTATAGCGTA TACGTCATCA TAGTCGCATA TATATATACA TATGCTAGTA
- TCACGCGAGA TCGATAGTGA TCGCTGCGTA TCTGACGTCA TGAGTCAGTA
- TGTAGTGTGA TGTCACACGA TGTCGTCGCA ACACATACGC ACAGTCGTGC
- ACATGACGAC ACGACAGCTC ACGTCTCATC ACTCATCTAC ACTCGCGCAC
- AGAGCGTCAC AGCGACTAGC AGTAGTGATC AGTGACACAC AGTGTATGTC
- ATAGATAGAC ATATAGTCGC ATCTACTGAC CACGTAGATC CACGTGTCGC
- CATACTCTAC CGACACTATC CGAGACGCGC CGTATGCGAC CGTCGATCTC
- CTACGACTGC CTAGTCACTC CTCTACGCTC CTGTACATAC TAGACTGCAC
- TAGCGCGCGC TAGCTCTATC TATAGACATC TATGATACGC TCACTCATAC
- TCATCGAGTC TCGAGCTCTC TCGCAGACAC TCTGTCTCGC TGAGTGACGC
- TGATGTGTAC TGCTATAGAC TGCTCGCTAC ACGTGCAGCG ACTCACAGAG
- AGACTCAGCG AGAGAGTGTG AGCTATCGCG AGTCTGACTG AGTGAGCTCG
- ATAGCTCTCG ATCACGTGCG ATCGTAGCAG ATCGTCTGTG ATGTACGATG
- ATGTGTCTAG CACACGATAG CACTCGCACG CAGACGTCTG CAGTACTGCG
- CGACAGCGAG CGATCTGTCG CGCGTGCTAG CGCTCGAGTG CGTGATGACG
- CTATGTACAG CTCGATATAG CTCGCACGCG CTGCGTCACG CTGTGCGTCG
- TAGCATACTG TATACATGTG TATCACTCAG TATCTGATAG TCGTGACATG
- TCTGATCGAG TGACATCTCG TGAGCTAGAG TGATAGAGCG TGCGTGTGCG
- TGCTAGTCAG TGTATCACAG TGTGCGCGTG ACACGACGAC ACACGTAGTA
- ACACTACTCG ACGACACGTA ACGAGTAGAC ACGCGTCTAG ACGTACACAC
- ACGTACTGTG ACGTAGATCG ACTACGTCTC ACTATACGAG ACTCGCGTCG
-}
-
-
-count_hash = Hash.new { |hash, key| hash[key] = 0 }
-mid_hash = {}
-
-mids.each_with_index do |mid, i|
- mid_hash[mid] = true
-end
-
-casts = []
-casts << {:long=>'pos', :short=>'p', :type=>'uint', :mandatory=>false, :default=>0, :allowed=>nil, :disallowed=>nil}
-
-options = Biopieces.options_parse(ARGV, casts)
-
-pos = options[:pos]
-
-Biopieces.open(options[:stream_in], options[:stream_out]) do |input, output|
- input.each_record do |record|
- if record.has_key? :SEQ
- tag = record[:SEQ][pos ... pos + MID_LEN].upcase
-
- if mid_hash.has_key? tag
- count_hash[tag] += 1
- end
- end
- output.puts record
- end
-
- mids.each_with_index do |mid, i|
- if count_hash[mid] > 0
- record = {}
- record[:REC_TYPE] = "MID"
- record[:MID_NUM] = i + 1
- record[:MID_COUNT] = count_hash[mid]
- record[:MID_SEQ] = mid
- output.puts record
- end
- end
-end
-
-
-# >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
-
-
-__END__
+++ /dev/null
-#!/usr/bin/env perl
-
-# Copyright (C) 2007-2009 Martin A. Hansen.
-
-# This program is free software; you can redistribute it and/or
-# modify it under the terms of the GNU General Public License
-# as published by the Free Software Foundation; either version 2
-# of the License, or (at your option) any later version.
-
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
-# GNU General Public License for more details.
-
-# You should have received a copy of the GNU General Public License
-# along with this program; if not, write to the Free Software
-# Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
-
-# http://www.gnu.org/copyleft/gpl.html
-
-
-# >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> DESCRIPTION <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
-
-# Read Solexa entries from one or more files.
-
-# >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
-
-
-use warnings;
-use strict;
-use Data::Dumper;
-use Maasha::Biopieces;
-use Maasha::Filesys;
-use Maasha::Solexa;
-use Maasha::Fastq;
-
-
-# >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
-
-
-my ( $options, $in, $out, $record, $data_in, $num, $entry, @seqs, @scores, $i );
-
-$options = Maasha::Biopieces::parse_options(
- [
- { long => 'data_in', short => 'i', type => 'files!', mandatory => 'no', default => undef, allowed => undef, disallowed => undef },
- { long => 'num', short => 'n', type => 'uint', mandatory => 'no', default => undef, allowed => undef, disallowed => '0' },
- { long => 'convert2dec', short => 'c', type => 'flag', mandatory => 'no', default => undef, allowed => undef, disallowed => undef },
- { long => 'cutoff', short => 'C', type => 'int', mandatory => 'no', default => 20, allowed => undef, disallowed => undef },
- { long => 'soft_mask', short => 's', type => 'flag', mandatory => 'no', default => undef, allowed => undef, disallowed => undef },
- ]
-);
-
-$in = Maasha::Biopieces::read_stream( $options->{ "stream_in" } );
-$out = Maasha::Biopieces::write_stream( $options->{ "stream_out" } );
-
-while ( $record = Maasha::Biopieces::get_record( $in ) ) {
- Maasha::Biopieces::put_record( $record, $out );
-}
-
-if ( $options->{ 'data_in' } )
-{
- $data_in = Maasha::Filesys::files_read_open( $options->{ 'data_in' } );
-
- $num = 1;
-
- while ( $entry = Maasha::Fastq::get_entry( $data_in ) )
- {
- if ( $record = Maasha::Fastq::fastq2biopiece( $entry ) )
- {
- Maasha::Fastq::softmask_solexa_str( $record->{ 'SEQ' }, $record->{ 'SCORES' }, $options->{ 'cutoff' } ) if $options->{ 'soft_mask' };
- $record->{ 'SCORES' } = Maasha::Fastq::solexa_str2dec_str( $record->{ 'SCORES' } ) if $options->{ 'convert2dec' };
-
- Maasha::Biopieces::put_record( $record, $out );
- }
-
- last if $options->{ "num" } and $num == $options->{ "num" };
-
- $num++;
- }
-
- close $data_in;
-}
-
-Maasha::Biopieces::close_stream( $in );
-Maasha::Biopieces::close_stream( $out );
-
-
-# >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
-
-
-BEGIN
-{
- Maasha::Biopieces::status_set();
-}
-
-
-END
-{
- Maasha::Biopieces::status_log();
-}
-
-
-# >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
-
-
-__END__
+++ /dev/null
-#!/usr/bin/env ruby
-
-# Copyright (C) 2007-2011 Martin A. Hansen.
-
-# This program is free software; you can redistribute it and/or
-# modify it under the terms of the GNU General Public License
-# as published by the Free Software Foundation; either version 2
-# of the License, or (at your option) any later version.
-
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
-# GNU General Public License for more details.
-
-# You should have received a copy of the GNU General Public License
-# along with this program; if not, write to the Free Software
-# Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
-
-# http://www.gnu.org/copyleft/gpl.html
-
-# >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
-
-# This program is part of the Biopieces framework (www.biopieces.org).
-
-# >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> DESCRIPTION <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
-
-# Find MID tags in sequences in the stream.
-
-# >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
-
-require 'maasha/biopieces'
-require 'maasha/bits'
-require 'pp'
-
-GS_SIZE = 10
-RL_SIZE = 11
-
-GSMID_HASH = {
- ACGAGTGCGT: "MID1",
- TCTCTATGCG: "MID10",
- TAGACTGCAC: "MID100",
- TAGCGCGCGC: "MID101",
- TAGCTCTATC: "MID102",
- TATAGACATC: "MID103",
- TATGATACGC: "MID104",
- TCACTCATAC: "MID105",
- TCATCGAGTC: "MID106",
- TCGAGCTCTC: "MID107",
- TCGCAGACAC: "MID108",
- TCTGTCTCGC: "MID109",
- TGATACGTCT: "MID11",
- TGAGTGACGC: "MID110",
- TGATGTGTAC: "MID111",
- TGCTATAGAC: "MID112",
- TGCTCGCTAC: "MID113",
- ACGTGCAGCG: "MID114",
- ACTCACAGAG: "MID115",
- AGACTCAGCG: "MID116",
- AGAGAGTGTG: "MID117",
- AGCTATCGCG: "MID118",
- AGTCTGACTG: "MID119",
- TACTGAGCTA: "MID12",
- AGTGAGCTCG: "MID120",
- ATAGCTCTCG: "MID121",
- ATCACGTGCG: "MID122",
- ATCGTAGCAG: "MID123",
- ATCGTCTGTG: "MID124",
- ATGTACGATG: "MID125",
- ATGTGTCTAG: "MID126",
- CACACGATAG: "MID127",
- CACTCGCACG: "MID128",
- CAGACGTCTG: "MID129",
- CATAGTAGTG: "MID13",
- CAGTACTGCG: "MID130",
- CGACAGCGAG: "MID131",
- CGATCTGTCG: "MID132",
- CGCGTGCTAG: "MID133",
- CGCTCGAGTG: "MID134",
- CGTGATGACG: "MID135",
- CTATGTACAG: "MID136",
- CTCGATATAG: "MID137",
- CTCGCACGCG: "MID138",
- CTGCGTCACG: "MID139",
- CGAGAGATAC: "MID14",
- CTGTGCGTCG: "MID140",
- TAGCATACTG: "MID141",
- TATACATGTG: "MID142",
- TATCACTCAG: "MID143",
- TATCTGATAG: "MID144",
- TCGTGACATG: "MID145",
- TCTGATCGAG: "MID146",
- TGACATCTCG: "MID147",
- TGAGCTAGAG: "MID148",
- TGATAGAGCG: "MID149",
- ATACGACGTA: "MID15",
- TGCGTGTGCG: "MID150",
- TGCTAGTCAG: "MID151",
- TGTATCACAG: "MID152",
- TGTGCGCGTG: "MID153",
- TCACGTACTA: "MID16",
- CGTCTAGTAC: "MID17",
- TCTACGTAGC: "MID18",
- TGTACTACTC: "MID19",
- ACGCTCGACA: "MID2",
- ACGACTACAG: "MID20",
- CGTAGACTAG: "MID21",
- TACGAGTATG: "MID22",
- TACTCTCGTG: "MID23",
- TAGAGACGAG: "MID24",
- TCGTCGCTCG: "MID25",
- ACATACGCGT: "MID26",
- ACGCGAGTAT: "MID27",
- ACTACTATGT: "MID28",
- ACTGTACAGT: "MID29",
- AGACGCACTC: "MID3",
- AGACTATACT: "MID30",
- AGCGTCGTCT: "MID31",
- AGTACGCTAT: "MID32",
- ATAGAGTACT: "MID33",
- CACGCTACGT: "MID34",
- CAGTAGACGT: "MID35",
- CGACGTGACT: "MID36",
- TACACACACT: "MID37",
- TACACGTGAT: "MID38",
- TACAGATCGT: "MID39",
- AGCACTGTAG: "MID4",
- TACGCTGTCT: "MID40",
- TAGTGTAGAT: "MID41",
- TCGATCACGT: "MID42",
- TCGCACTAGT: "MID43",
- TCTAGCGACT: "MID44",
- TCTATACTAT: "MID45",
- TGACGTATGT: "MID46",
- TGTGAGTAGT: "MID47",
- ACAGTATATA: "MID48",
- ACGCGATCGA: "MID49",
- ATCAGACACG: "MID5",
- ACTAGCAGTA: "MID50",
- AGCTCACGTA: "MID51",
- AGTATACATA: "MID52",
- AGTCGAGAGA: "MID53",
- AGTGCTACGA: "MID54",
- CGATCGTATA: "MID55",
- CGCAGTACGA: "MID56",
- CGCGTATACA: "MID57",
- CGTACAGTCA: "MID58",
- CGTACTCAGA: "MID59",
- ATATCGCGAG: "MID6",
- CTACGCTCTA: "MID60",
- CTATAGCGTA: "MID61",
- TACGTCATCA: "MID62",
- TAGTCGCATA: "MID63",
- TATATATACA: "MID64",
- TATGCTAGTA: "MID65",
- TCACGCGAGA: "MID66",
- TCGATAGTGA: "MID67",
- TCGCTGCGTA: "MID68",
- TCTGACGTCA: "MID69",
- CGTGTCTCTA: "MID7",
- TGAGTCAGTA: "MID70",
- TGTAGTGTGA: "MID71",
- TGTCACACGA: "MID72",
- TGTCGTCGCA: "MID73",
- ACACATACGC: "MID74",
- ACAGTCGTGC: "MID75",
- ACATGACGAC: "MID76",
- ACGACAGCTC: "MID77",
- ACGTCTCATC: "MID78",
- ACTCATCTAC: "MID79",
- CTCGCGTGTC: "MID8",
- ACTCGCGCAC: "MID80",
- AGAGCGTCAC: "MID81",
- AGCGACTAGC: "MID82",
- AGTAGTGATC: "MID83",
- AGTGACACAC: "MID84",
- AGTGTATGTC: "MID85",
- ATAGATAGAC: "MID86",
- ATATAGTCGC: "MID87",
- ATCTACTGAC: "MID88",
- CACGTAGATC: "MID89",
- TAGTATCAGC: "MID9",
- CACGTGTCGC: "MID90",
- CATACTCTAC: "MID91",
- CGACACTATC: "MID92",
- CGAGACGCGC: "MID93",
- CGTATGCGAC: "MID94",
- CGTCGATCTC: "MID95",
- CTACGACTGC: "MID96",
- CTAGTCACTC: "MID97",
- CTCTACGCTC: "MID98",
- CTGTACATAC: "MID99",
-}
-
-RLMID_HASH = {
- ACACGACGACT: "RL1",
- ACACGTAGTAT: "RL2",
- ACACTACTCGT: "RL3",
- ACGACACGTAT: "RL4",
- ACGAGTAGACT: "RL5",
- ACGCGTCTAGT: "RL6",
- ACGTACACACT: "RL7",
- ACGTACTGTGT: "RL8",
- ACGTAGATCGT: "RL9",
- ACTACGTCTCT: "RL10",
- ACTATACGAGT: "RL11",
- ACTCGCGTCGT: "RL12"
-}
-
-class MIDfinder
- def initialize(mid_hash, pos, size, max_mismatches)
- @mid_hash = mid_hash
- @pos = pos
- @size = size
- @max_mismatches = max_mismatches
- end
-
- def find_mid(seq)
- hamming_dist = 0
- tag = seq[@pos ... @pos + @size].upcase.to_sym
-
- if @mid_hash.has_key? tag
- return MID.new(tag, @mid_hash[tag], @pos, @size, hamming_dist)
- elsif @max_mismatches > 0
- @mid_hash.each_pair do |mid, mid_name|
- hamming_dist = tag.to_s.hamming_distance(mid.to_s)
-
- if hamming_dist <= @max_mismatches
- return MID.new(mid, @mid_hash[mid], @pos, @size, hamming_dist)
- end
- end
- end
-
- nil
- end
-
- private
-
- # Class to hold a MID object.
- class MID
- attr_accessor :tag, :name, :pos, :len, :mismatches
-
- def initialize(tag, name, pos, len, mismatches)
- @tag = tag
- @name = name
- @pos = pos
- @len = len
- @mismatches = mismatches
- end
-
- def to_hash
- hash = {}
- hash[:MID] = @tag
- hash[:MID_NAME] = @name
- hash[:MID_POS] = @pos
- hash[:MID_LEN] = @len
- hash[:MID_MISMATCHES] = @mismatches
- hash
- end
-
- def start
- @pos + @len
- end
- end
-end
-casts = []
-casts << {:long=>'pos', :short=>'p', :type=>'uint', :mandatory=>false, :default=>0, :allowed=>nil, :disallowed=>nil}
-casts << {:long=>'mismatches', :short=>'m', :type=>'uint', :mandatory=>false, :default=>0, :allowed=>"0,1,2", :disallowed=>nil}
-casts << {:long=>'gsmids', :short=>'g', :type=>'flag', :mandatory=>false, :default=>nil, :allowed=>nil, :disallowed=>nil}
-casts << {:long=>'rlmids', :short=>'r', :type=>'flag', :mandatory=>false, :default=>nil, :allowed=>nil, :disallowed=>nil}
-
-options = Biopieces.options_parse(ARGV, casts)
-
-raise "Can't remove only GSMIDs and only RLMIDs simultaniously." if options[:rlmids] and options[:gsmids]
-
-pos = options[:pos]
-mismatches = options[:mismatches]
-
-gsfinder = MIDfinder.new(GSMID_HASH, options[:pos], GS_SIZE, options[:mismatches])
-rlfinder = MIDfinder.new(RLMID_HASH, options[:pos], RL_SIZE, options[:mismatches])
-
-Biopieces.open(options[:stream_in], options[:stream_out]) do |input, output|
- input.each_record do |record|
- if record.has_key? :SEQ
-
- if options[:gsmids]
- mid = gsfinder.find_mid(record[:SEQ])
- elsif options[:rlmids]
- mid = rlfinder.find_mid(record[:SEQ])
- else
- mid = gsfinder.find_mid(record[:SEQ]) || rlfinder.find_mid(record[:SEQ])
- end
-
- if mid
- record.merge!(mid.to_hash)
-
- record[:SEQ] = record[:SEQ][mid.start .. -1]
- record[:SCORES] = record[:SCORES][mid.start .. -1] if record[:SCORES]
- record[:SEQ_LEN] = record[:SEQ].length
- end
- end
-
- output.puts record
- end
-end
-
-
-# >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
-
-
-__END__
+++ /dev/null
-SEQ: atcgACGAGTGCGTatcg
----
-SEQ: atcgACGCTCGACAatcg
----
-SEQ: atcgAGACGCACTCatcg
----
-SEQ: atcgAGCACTGTAGatcg
----
-SEQ: atcgATCAGACACGatcg
----
-SEQ: atcgATATCGCGAGatcg
----
-SEQ: atcgCGTGTCTCTAatcg
----
-SEQ: atcgCTCGCGTGTCatcg
----
-SEQ: atcgTAGTATCAGCatcg
----
-SEQ: atcgTCTCTATGCGatcg
----
-SEQ: atcgTGATACGTCTatcg
----
-SEQ: atcgTACTGAGCTAatcg
----
-SEQ: atcgCATAGTAGTGatcg
----
-SEQ: atcgCGAGAGATACatcg
----
-SEQ: atcgATACGACGTAatcg
----
-SEQ: atcgTCACGTACTAatcg
----
-SEQ: atcgCGTCTAGTACatcg
----
-SEQ: atcgTCTACGTAGCatcg
----
-SEQ: atcgTGTACTACTCatcg
----
-SEQ: atcgACGACTACAGatcg
----
-SEQ: atcgCGTAGACTAGatcg
----
-SEQ: atcgTACGAGTATGatcg
----
-SEQ: atcgTACTCTCGTGatcg
----
-SEQ: atcgTAGAGACGAGatcg
----
-SEQ: atcgTCGTCGCTCGatcg
----
-SEQ: atcgACATACGCGTatcg
----
-SEQ: atcgACGCGAGTATatcg
----
-SEQ: atcgACTACTATGTatcg
----
-SEQ: atcgACTGTACAGTatcg
----
-SEQ: atcgAGACTATACTatcg
----
-SEQ: atcgAGCGTCGTCTatcg
----
-SEQ: atcgAGTACGCTATatcg
----
-SEQ: atcgATAGAGTACTatcg
----
-SEQ: atcgCACGCTACGTatcg
----
-SEQ: atcgCAGTAGACGTatcg
----
-SEQ: atcgCGACGTGACTatcg
----
-SEQ: atcgTACACACACTatcg
----
-SEQ: atcgTACACGTGATatcg
----
-SEQ: atcgTACAGATCGTatcg
----
-SEQ: atcgTACGCTGTCTatcg
----
-SEQ: atcgTAGTGTAGATatcg
----
-SEQ: atcgTCGATCACGTatcg
----
-SEQ: atcgTCGCACTAGTatcg
----
-SEQ: atcgTCTAGCGACTatcg
----
-SEQ: atcgTCTATACTATatcg
----
-SEQ: atcgTGACGTATGTatcg
----
-SEQ: atcgTGTGAGTAGTatcg
----
-SEQ: atcgACAGTATATAatcg
----
-SEQ: atcgACGCGATCGAatcg
----
-SEQ: atcgACTAGCAGTAatcg
----
-SEQ: atcgAGCTCACGTAatcg
----
-SEQ: atcgAGTATACATAatcg
----
-SEQ: atcgAGTCGAGAGAatcg
----
-SEQ: atcgAGTGCTACGAatcg
----
-SEQ: atcgCGATCGTATAatcg
----
-SEQ: atcgCGCAGTACGAatcg
----
-SEQ: atcgCGCGTATACAatcg
----
-SEQ: atcgCGTACAGTCAatcg
----
-SEQ: atcgCGTACTCAGAatcg
----
-SEQ: atcgCTACGCTCTAatcg
----
-SEQ: atcgCTATAGCGTAatcg
----
-SEQ: atcgTACGTCATCAatcg
----
-SEQ: atcgTAGTCGCATAatcg
----
-SEQ: atcgTATATATACAatcg
----
-SEQ: atcgTATGCTAGTAatcg
----
-SEQ: atcgTCACGCGAGAatcg
----
-SEQ: atcgTCGATAGTGAatcg
----
-SEQ: atcgTCGCTGCGTAatcg
----
-SEQ: atcgTCTGACGTCAatcg
----
-SEQ: atcgTGAGTCAGTAatcg
----
-SEQ: atcgTGTAGTGTGAatcg
----
-SEQ: atcgTGTCACACGAatcg
----
-SEQ: atcgTGTCGTCGCAatcg
----
-SEQ: atcgACACATACGCatcg
----
-SEQ: atcgACAGTCGTGCatcg
----
-SEQ: atcgACATGACGACatcg
----
-SEQ: atcgACGACAGCTCatcg
----
-SEQ: atcgACGTCTCATCatcg
----
-SEQ: atcgACTCATCTACatcg
----
-SEQ: atcgACTCGCGCACatcg
----
-SEQ: atcgAGAGCGTCACatcg
----
-SEQ: atcgAGCGACTAGCatcg
----
-SEQ: atcgAGTAGTGATCatcg
----
-SEQ: atcgAGTGACACACatcg
----
-SEQ: atcgAGTGTATGTCatcg
----
-SEQ: atcgATAGATAGACatcg
----
-SEQ: atcgATATAGTCGCatcg
----
-SEQ: atcgATCTACTGACatcg
----
-SEQ: atcgCACGTAGATCatcg
----
-SEQ: atcgCACGTGTCGCatcg
----
-SEQ: atcgCATACTCTACatcg
----
-SEQ: atcgCGACACTATCatcg
----
-SEQ: atcgCGAGACGCGCatcg
----
-SEQ: atcgCGTATGCGACatcg
----
-SEQ: atcgCGTCGATCTCatcg
----
-SEQ: atcgCTACGACTGCatcg
----
-SEQ: atcgCTAGTCACTCatcg
----
-SEQ: atcgCTCTACGCTCatcg
----
-SEQ: atcgCTGTACATACatcg
----
-SEQ: atcgTAGACTGCACatcg
----
-SEQ: atcgTAGCGCGCGCatcg
----
-SEQ: atcgTAGCTCTATCatcg
----
-SEQ: atcgTATAGACATCatcg
----
-SEQ: atcgTATGATACGCatcg
----
-SEQ: atcgTCACTCATACatcg
----
-SEQ: atcgTCATCGAGTCatcg
----
-SEQ: atcgTCGAGCTCTCatcg
----
-SEQ: atcgTCGCAGACACatcg
----
-SEQ: atcgTCTGTCTCGCatcg
----
-SEQ: atcgTGAGTGACGCatcg
----
-SEQ: atcgTGATGTGTACatcg
----
-SEQ: atcgTGCTATAGACatcg
----
-SEQ: atcgTGCTCGCTACatcg
----
-SEQ: atcgACGTGCAGCGatcg
----
-SEQ: atcgACTCACAGAGatcg
----
-SEQ: atcgAGACTCAGCGatcg
----
-SEQ: atcgAGAGAGTGTGatcg
----
-SEQ: atcgAGCTATCGCGatcg
----
-SEQ: atcgAGTCTGACTGatcg
----
-SEQ: atcgAGTGAGCTCGatcg
----
-SEQ: atcgATAGCTCTCGatcg
----
-SEQ: atcgATCACGTGCGatcg
----
-SEQ: atcgATCGTAGCAGatcg
----
-SEQ: atcgATCGTCTGTGatcg
----
-SEQ: atcgATGTACGATGatcg
----
-SEQ: atcgATGTGTCTAGatcg
----
-SEQ: atcgCACACGATAGatcg
----
-SEQ: atcgCACTCGCACGatcg
----
-SEQ: atcgCAGACGTCTGatcg
----
-SEQ: atcgCAGTACTGCGatcg
----
-SEQ: atcgCGACAGCGAGatcg
----
-SEQ: atcgCGATCTGTCGatcg
----
-SEQ: atcgCGCGTGCTAGatcg
----
-SEQ: atcgCGCTCGAGTGatcg
----
-SEQ: atcgCGTGATGACGatcg
----
-SEQ: atcgCTATGTACAGatcg
----
-SEQ: atcgCTCGATATAGatcg
----
-SEQ: atcgCTCGCACGCGatcg
----
-SEQ: atcgCTGCGTCACGatcg
----
-SEQ: atcgCTGTGCGTCGatcg
----
-SEQ: atcgTAGCATACTGatcg
----
-SEQ: atcgTATACATGTGatcg
----
-SEQ: atcgTATCACTCAGatcg
----
-SEQ: atcgTATCTGATAGatcg
----
-SEQ: atcgTCGTGACATGatcg
----
-SEQ: atcgTCTGATCGAGatcg
----
-SEQ: atcgTGACATCTCGatcg
----
-SEQ: atcgTGAGCTAGAGatcg
----
-SEQ: atcgTGATAGAGCGatcg
----
-SEQ: atcgTGCGTGTGCGatcg
----
-SEQ: atcgTGCTAGTCAGatcg
----
-SEQ: atcgTGTATCACAGatcg
----
-SEQ: atcgTGTGCGCGTGatcg
----
+++ /dev/null
-SEQ: ACGAGTGCGTatcg
----
-SEQ: ACGCTCGACAatcg
----
-SEQ: AGACGCACTCatcg
----
-SEQ: AGCACTGTAGatcg
----
-SEQ: ATCAGACACGatcg
----
-SEQ: ATATCGCGAGatcg
----
-SEQ: CGTGTCTCTAatcg
----
-SEQ: CTCGCGTGTCatcg
----
-SEQ: TAGTATCAGCatcg
----
-SEQ: TCTCTATGCGatcg
----
-SEQ: TGATACGTCTatcg
----
-SEQ: TACTGAGCTAatcg
----
-SEQ: CATAGTAGTGatcg
----
-SEQ: CGAGAGATACatcg
----
-SEQ: ATACGACGTAatcg
----
-SEQ: TCACGTACTAatcg
----
-SEQ: CGTCTAGTACatcg
----
-SEQ: TCTACGTAGCatcg
----
-SEQ: TGTACTACTCatcg
----
-SEQ: ACGACTACAGatcg
----
-SEQ: CGTAGACTAGatcg
----
-SEQ: TACGAGTATGatcg
----
-SEQ: TACTCTCGTGatcg
----
-SEQ: TAGAGACGAGatcg
----
-SEQ: TCGTCGCTCGatcg
----
-SEQ: ACATACGCGTatcg
----
-SEQ: ACGCGAGTATatcg
----
-SEQ: ACTACTATGTatcg
----
-SEQ: ACTGTACAGTatcg
----
-SEQ: AGACTATACTatcg
----
-SEQ: AGCGTCGTCTatcg
----
-SEQ: AGTACGCTATatcg
----
-SEQ: ATAGAGTACTatcg
----
-SEQ: CACGCTACGTatcg
----
-SEQ: CAGTAGACGTatcg
----
-SEQ: CGACGTGACTatcg
----
-SEQ: TACACACACTatcg
----
-SEQ: TACACGTGATatcg
----
-SEQ: TACAGATCGTatcg
----
-SEQ: TACGCTGTCTatcg
----
-SEQ: TAGTGTAGATatcg
----
-SEQ: TCGATCACGTatcg
----
-SEQ: TCGCACTAGTatcg
----
-SEQ: TCTAGCGACTatcg
----
-SEQ: TCTATACTATatcg
----
-SEQ: TGACGTATGTatcg
----
-SEQ: TGTGAGTAGTatcg
----
-SEQ: ACAGTATATAatcg
----
-SEQ: ACGCGATCGAatcg
----
-SEQ: ACTAGCAGTAatcg
----
-SEQ: AGCTCACGTAatcg
----
-SEQ: AGTATACATAatcg
----
-SEQ: AGTCGAGAGAatcg
----
-SEQ: AGTGCTACGAatcg
----
-SEQ: CGATCGTATAatcg
----
-SEQ: CGCAGTACGAatcg
----
-SEQ: CGCGTATACAatcg
----
-SEQ: CGTACAGTCAatcg
----
-SEQ: CGTACTCAGAatcg
----
-SEQ: CTACGCTCTAatcg
----
-SEQ: CTATAGCGTAatcg
----
-SEQ: TACGTCATCAatcg
----
-SEQ: TAGTCGCATAatcg
----
-SEQ: TATATATACAatcg
----
-SEQ: TATGCTAGTAatcg
----
-SEQ: TCACGCGAGAatcg
----
-SEQ: TCGATAGTGAatcg
----
-SEQ: TCGCTGCGTAatcg
----
-SEQ: TCTGACGTCAatcg
----
-SEQ: TGAGTCAGTAatcg
----
-SEQ: TGTAGTGTGAatcg
----
-SEQ: TGTCACACGAatcg
----
-SEQ: TGTCGTCGCAatcg
----
-SEQ: ACACATACGCatcg
----
-SEQ: ACAGTCGTGCatcg
----
-SEQ: ACATGACGACatcg
----
-SEQ: ACGACAGCTCatcg
----
-SEQ: ACGTCTCATCatcg
----
-SEQ: ACTCATCTACatcg
----
-SEQ: ACTCGCGCACatcg
----
-SEQ: AGAGCGTCACatcg
----
-SEQ: AGCGACTAGCatcg
----
-SEQ: AGTAGTGATCatcg
----
-SEQ: AGTGACACACatcg
----
-SEQ: AGTGTATGTCatcg
----
-SEQ: ATAGATAGACatcg
----
-SEQ: ATATAGTCGCatcg
----
-SEQ: ATCTACTGACatcg
----
-SEQ: CACGTAGATCatcg
----
-SEQ: CACGTGTCGCatcg
----
-SEQ: CATACTCTACatcg
----
-SEQ: CGACACTATCatcg
----
-SEQ: CGAGACGCGCatcg
----
-SEQ: CGTATGCGACatcg
----
-SEQ: CGTCGATCTCatcg
----
-SEQ: CTACGACTGCatcg
----
-SEQ: CTAGTCACTCatcg
----
-SEQ: CTCTACGCTCatcg
----
-SEQ: CTGTACATACatcg
----
-SEQ: TAGACTGCACatcg
----
-SEQ: TAGCGCGCGCatcg
----
-SEQ: TAGCTCTATCatcg
----
-SEQ: TATAGACATCatcg
----
-SEQ: TATGATACGCatcg
----
-SEQ: TCACTCATACatcg
----
-SEQ: TCATCGAGTCatcg
----
-SEQ: TCGAGCTCTCatcg
----
-SEQ: TCGCAGACACatcg
----
-SEQ: TCTGTCTCGCatcg
----
-SEQ: TGAGTGACGCatcg
----
-SEQ: TGATGTGTACatcg
----
-SEQ: TGCTATAGACatcg
----
-SEQ: TGCTCGCTACatcg
----
-SEQ: ACGTGCAGCGatcg
----
-SEQ: ACTCACAGAGatcg
----
-SEQ: AGACTCAGCGatcg
----
-SEQ: AGAGAGTGTGatcg
----
-SEQ: AGCTATCGCGatcg
----
-SEQ: AGTCTGACTGatcg
----
-SEQ: AGTGAGCTCGatcg
----
-SEQ: ATAGCTCTCGatcg
----
-SEQ: ATCACGTGCGatcg
----
-SEQ: ATCGTAGCAGatcg
----
-SEQ: ATCGTCTGTGatcg
----
-SEQ: ATGTACGATGatcg
----
-SEQ: ATGTGTCTAGatcg
----
-SEQ: CACACGATAGatcg
----
-SEQ: CACTCGCACGatcg
----
-SEQ: CAGACGTCTGatcg
----
-SEQ: CAGTACTGCGatcg
----
-SEQ: CGACAGCGAGatcg
----
-SEQ: CGATCTGTCGatcg
----
-SEQ: CGCGTGCTAGatcg
----
-SEQ: CGCTCGAGTGatcg
----
-SEQ: CGTGATGACGatcg
----
-SEQ: CTATGTACAGatcg
----
-SEQ: CTCGATATAGatcg
----
-SEQ: CTCGCACGCGatcg
----
-SEQ: CTGCGTCACGatcg
----
-SEQ: CTGTGCGTCGatcg
----
-SEQ: TAGCATACTGatcg
----
-SEQ: TATACATGTGatcg
----
-SEQ: TATCACTCAGatcg
----
-SEQ: TATCTGATAGatcg
----
-SEQ: TCGTGACATGatcg
----
-SEQ: TCTGATCGAGatcg
----
-SEQ: TGACATCTCGatcg
----
-SEQ: TGAGCTAGAGatcg
----
-SEQ: TGATAGAGCGatcg
----
-SEQ: TGCGTGTGCGatcg
----
-SEQ: TGCTAGTCAGatcg
----
-SEQ: TGTATCACAGatcg
----
-SEQ: TGTGCGCGTGatcg
----
+++ /dev/null
-@HWI-EAS157_20FFGAAXX:2:1:888:434
-TTGGTCGCTCGCTCCGCGACCTCAGATCAGACGTGG
-+HWI-EAS157_20FFGAAXX:2:1:888:434
-hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhKhe
-@HWI-EAS157_20FFGAAXX:2:1:898:373
-TTCTTGTTGTTGAAATACAACGATGGTTTTTCATAT
-+HWI-EAS157_20FFGAAXX:2:1:898:373
-hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhghPh
-@HWI-EAS157_20FFGAAXX:2:1:907:487
-TGAATGCCTGGGAGGAGTCCCGGAGTGTAGAGATTT
-+HWI-EAS157_20FFGAAXX:2:1:907:487
-hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh[hhh
+++ /dev/null
-SEQ_NAME: test_RL12_0_mismatches
-SEQ: atcgACTCGCGTCGTgtgactgact
-SEQ_LEN: 25
----
-SEQ_NAME: test_RL12_1_mismatches
-SEQ: atcgACTCGCcTCGTgtgactgact
-SEQ_LEN: 25
----
-SEQ_NAME: test_RL12_2_mismatches
-SEQ: atcgACTCaCcTCGTgtgactgact
-SEQ_LEN: 25
----
-SEQ_NAME: test_RL12_2_mismatches_repeat
-SEQ: atcgACTCaCcTCGTgtgactgact
-SEQ_LEN: 25
----
-SEQ_NAME: test_GS99_0_mismatches
-SEQ: atcgCTGTACATACgtagtagtagt
-SEQ_LEN: 25
----
-SEQ_NAME: test_GS99_1_mismatches
-SEQ: atcgCTGTtCATACgtagtagtagt
-SEQ_LEN: 25
----
-SEQ_NAME: test_GS99_2_mismatches
-SEQ: atcgCTGTtCAgACgtagtagtagt
-SEQ_LEN: 25
----
-SEQ_NAME: test_GS99_2_mismatches_repeat
-SEQ: atcgCTGTtCAgACgtagtagtagt
-SEQ_LEN: 25
----
+++ /dev/null
-SEQ: atcgACGAGTGCGTatcg
----
-SEQ: atcgACGCTCGACAatcg
----
-SEQ: atcgAGACGCACTCatcg
----
-SEQ: atcgAGCACTGTAGatcg
----
-SEQ: atcgATCAGACACGatcg
----
-SEQ: atcgATATCGCGAGatcg
----
-SEQ: atcgCGTGTCTCTAatcg
----
-SEQ: atcgCTCGCGTGTCatcg
----
-SEQ: atcgTAGTATCAGCatcg
----
-SEQ: atcgTCTCTATGCGatcg
----
-SEQ: atcgTGATACGTCTatcg
----
-SEQ: atcgTACTGAGCTAatcg
----
-SEQ: atcgCATAGTAGTGatcg
----
-SEQ: atcgCGAGAGATACatcg
----
-SEQ: atcgATACGACGTAatcg
----
-SEQ: atcgTCACGTACTAatcg
----
-SEQ: atcgCGTCTAGTACatcg
----
-SEQ: atcgTCTACGTAGCatcg
----
-SEQ: atcgTGTACTACTCatcg
----
-SEQ: atcgACGACTACAGatcg
----
-SEQ: atcgCGTAGACTAGatcg
----
-SEQ: atcgTACGAGTATGatcg
----
-SEQ: atcgTACTCTCGTGatcg
----
-SEQ: atcgTAGAGACGAGatcg
----
-SEQ: atcgTCGTCGCTCGatcg
----
-SEQ: atcgACATACGCGTatcg
----
-SEQ: atcgACGCGAGTATatcg
----
-SEQ: atcgACTACTATGTatcg
----
-SEQ: atcgACTGTACAGTatcg
----
-SEQ: atcgAGACTATACTatcg
----
-SEQ: atcgAGCGTCGTCTatcg
----
-SEQ: atcgAGTACGCTATatcg
----
-SEQ: atcgATAGAGTACTatcg
----
-SEQ: atcgCACGCTACGTatcg
----
-SEQ: atcgCAGTAGACGTatcg
----
-SEQ: atcgCGACGTGACTatcg
----
-SEQ: atcgTACACACACTatcg
----
-SEQ: atcgTACACGTGATatcg
----
-SEQ: atcgTACAGATCGTatcg
----
-SEQ: atcgTACGCTGTCTatcg
----
-SEQ: atcgTAGTGTAGATatcg
----
-SEQ: atcgTCGATCACGTatcg
----
-SEQ: atcgTCGCACTAGTatcg
----
-SEQ: atcgTCTAGCGACTatcg
----
-SEQ: atcgTCTATACTATatcg
----
-SEQ: atcgTGACGTATGTatcg
----
-SEQ: atcgTGTGAGTAGTatcg
----
-SEQ: atcgACAGTATATAatcg
----
-SEQ: atcgACGCGATCGAatcg
----
-SEQ: atcgACTAGCAGTAatcg
----
-SEQ: atcgAGCTCACGTAatcg
----
-SEQ: atcgAGTATACATAatcg
----
-SEQ: atcgAGTCGAGAGAatcg
----
-SEQ: atcgAGTGCTACGAatcg
----
-SEQ: atcgCGATCGTATAatcg
----
-SEQ: atcgCGCAGTACGAatcg
----
-SEQ: atcgCGCGTATACAatcg
----
-SEQ: atcgCGTACAGTCAatcg
----
-SEQ: atcgCGTACTCAGAatcg
----
-SEQ: atcgCTACGCTCTAatcg
----
-SEQ: atcgCTATAGCGTAatcg
----
-SEQ: atcgTACGTCATCAatcg
----
-SEQ: atcgTAGTCGCATAatcg
----
-SEQ: atcgTATATATACAatcg
----
-SEQ: atcgTATGCTAGTAatcg
----
-SEQ: atcgTCACGCGAGAatcg
----
-SEQ: atcgTCGATAGTGAatcg
----
-SEQ: atcgTCGCTGCGTAatcg
----
-SEQ: atcgTCTGACGTCAatcg
----
-SEQ: atcgTGAGTCAGTAatcg
----
-SEQ: atcgTGTAGTGTGAatcg
----
-SEQ: atcgTGTCACACGAatcg
----
-SEQ: atcgTGTCGTCGCAatcg
----
-SEQ: atcgACACATACGCatcg
----
-SEQ: atcgACAGTCGTGCatcg
----
-SEQ: atcgACATGACGACatcg
----
-SEQ: atcgACGACAGCTCatcg
----
-SEQ: atcgACGTCTCATCatcg
----
-SEQ: atcgACTCATCTACatcg
----
-SEQ: atcgACTCGCGCACatcg
----
-SEQ: atcgAGAGCGTCACatcg
----
-SEQ: atcgAGCGACTAGCatcg
----
-SEQ: atcgAGTAGTGATCatcg
----
-SEQ: atcgAGTGACACACatcg
----
-SEQ: atcgAGTGTATGTCatcg
----
-SEQ: atcgATAGATAGACatcg
----
-SEQ: atcgATATAGTCGCatcg
----
-SEQ: atcgATCTACTGACatcg
----
-SEQ: atcgCACGTAGATCatcg
----
-SEQ: atcgCACGTGTCGCatcg
----
-SEQ: atcgCATACTCTACatcg
----
-SEQ: atcgCGACACTATCatcg
----
-SEQ: atcgCGAGACGCGCatcg
----
-SEQ: atcgCGTATGCGACatcg
----
-SEQ: atcgCGTCGATCTCatcg
----
-SEQ: atcgCTACGACTGCatcg
----
-SEQ: atcgCTAGTCACTCatcg
----
-SEQ: atcgCTCTACGCTCatcg
----
-SEQ: atcgCTGTACATACatcg
----
-SEQ: atcgTAGACTGCACatcg
----
-SEQ: atcgTAGCGCGCGCatcg
----
-SEQ: atcgTAGCTCTATCatcg
----
-SEQ: atcgTATAGACATCatcg
----
-SEQ: atcgTATGATACGCatcg
----
-SEQ: atcgTCACTCATACatcg
----
-SEQ: atcgTCATCGAGTCatcg
----
-SEQ: atcgTCGAGCTCTCatcg
----
-SEQ: atcgTCGCAGACACatcg
----
-SEQ: atcgTCTGTCTCGCatcg
----
-SEQ: atcgTGAGTGACGCatcg
----
-SEQ: atcgTGATGTGTACatcg
----
-SEQ: atcgTGCTATAGACatcg
----
-SEQ: atcgTGCTCGCTACatcg
----
-SEQ: atcgACGTGCAGCGatcg
----
-SEQ: atcgACTCACAGAGatcg
----
-SEQ: atcgAGACTCAGCGatcg
----
-SEQ: atcgAGAGAGTGTGatcg
----
-SEQ: atcgAGCTATCGCGatcg
----
-SEQ: atcgAGTCTGACTGatcg
----
-SEQ: atcgAGTGAGCTCGatcg
----
-SEQ: atcgATAGCTCTCGatcg
----
-SEQ: atcgATCACGTGCGatcg
----
-SEQ: atcgATCGTAGCAGatcg
----
-SEQ: atcgATCGTCTGTGatcg
----
-SEQ: atcgATGTACGATGatcg
----
-SEQ: atcgATGTGTCTAGatcg
----
-SEQ: atcgCACACGATAGatcg
----
-SEQ: atcgCACTCGCACGatcg
----
-SEQ: atcgCAGACGTCTGatcg
----
-SEQ: atcgCAGTACTGCGatcg
----
-SEQ: atcgCGACAGCGAGatcg
----
-SEQ: atcgCGATCTGTCGatcg
----
-SEQ: atcgCGCGTGCTAGatcg
----
-SEQ: atcgCGCTCGAGTGatcg
----
-SEQ: atcgCGTGATGACGatcg
----
-SEQ: atcgCTATGTACAGatcg
----
-SEQ: atcgCTCGATATAGatcg
----
-SEQ: atcgCTCGCACGCGatcg
----
-SEQ: atcgCTGCGTCACGatcg
----
-SEQ: atcgCTGTGCGTCGatcg
----
-SEQ: atcgTAGCATACTGatcg
----
-SEQ: atcgTATACATGTGatcg
----
-SEQ: atcgTATCACTCAGatcg
----
-SEQ: atcgTATCTGATAGatcg
----
-SEQ: atcgTCGTGACATGatcg
----
-SEQ: atcgTCTGATCGAGatcg
----
-SEQ: atcgTGACATCTCGatcg
----
-SEQ: atcgTGAGCTAGAGatcg
----
-SEQ: atcgTGATAGAGCGatcg
----
-SEQ: atcgTGCGTGTGCGatcg
----
-SEQ: atcgTGCTAGTCAGatcg
----
-SEQ: atcgTGTATCACAGatcg
----
-SEQ: atcgTGTGCGCGTGatcg
----
-REC_TYPE: MID
-MID_NUM: 1
-MID_COUNT: 1
-MID_SEQ: ACGAGTGCGT
----
-REC_TYPE: MID
-MID_NUM: 2
-MID_COUNT: 1
-MID_SEQ: ACGCTCGACA
----
-REC_TYPE: MID
-MID_NUM: 3
-MID_COUNT: 1
-MID_SEQ: AGACGCACTC
----
-REC_TYPE: MID
-MID_NUM: 4
-MID_COUNT: 1
-MID_SEQ: AGCACTGTAG
----
-REC_TYPE: MID
-MID_NUM: 5
-MID_COUNT: 1
-MID_SEQ: ATCAGACACG
----
-REC_TYPE: MID
-MID_NUM: 6
-MID_COUNT: 1
-MID_SEQ: ATATCGCGAG
----
-REC_TYPE: MID
-MID_NUM: 7
-MID_COUNT: 1
-MID_SEQ: CGTGTCTCTA
----
-REC_TYPE: MID
-MID_NUM: 8
-MID_COUNT: 1
-MID_SEQ: CTCGCGTGTC
----
-REC_TYPE: MID
-MID_NUM: 9
-MID_COUNT: 1
-MID_SEQ: TAGTATCAGC
----
-REC_TYPE: MID
-MID_NUM: 10
-MID_COUNT: 1
-MID_SEQ: TCTCTATGCG
----
-REC_TYPE: MID
-MID_NUM: 11
-MID_COUNT: 1
-MID_SEQ: TGATACGTCT
----
-REC_TYPE: MID
-MID_NUM: 12
-MID_COUNT: 1
-MID_SEQ: TACTGAGCTA
----
-REC_TYPE: MID
-MID_NUM: 13
-MID_COUNT: 1
-MID_SEQ: CATAGTAGTG
----
-REC_TYPE: MID
-MID_NUM: 14
-MID_COUNT: 1
-MID_SEQ: CGAGAGATAC
----
-REC_TYPE: MID
-MID_NUM: 15
-MID_COUNT: 1
-MID_SEQ: ATACGACGTA
----
-REC_TYPE: MID
-MID_NUM: 16
-MID_COUNT: 1
-MID_SEQ: TCACGTACTA
----
-REC_TYPE: MID
-MID_NUM: 17
-MID_COUNT: 1
-MID_SEQ: CGTCTAGTAC
----
-REC_TYPE: MID
-MID_NUM: 18
-MID_COUNT: 1
-MID_SEQ: TCTACGTAGC
----
-REC_TYPE: MID
-MID_NUM: 19
-MID_COUNT: 1
-MID_SEQ: TGTACTACTC
----
-REC_TYPE: MID
-MID_NUM: 20
-MID_COUNT: 1
-MID_SEQ: ACGACTACAG
----
-REC_TYPE: MID
-MID_NUM: 21
-MID_COUNT: 1
-MID_SEQ: CGTAGACTAG
----
-REC_TYPE: MID
-MID_NUM: 22
-MID_COUNT: 1
-MID_SEQ: TACGAGTATG
----
-REC_TYPE: MID
-MID_NUM: 23
-MID_COUNT: 1
-MID_SEQ: TACTCTCGTG
----
-REC_TYPE: MID
-MID_NUM: 24
-MID_COUNT: 1
-MID_SEQ: TAGAGACGAG
----
-REC_TYPE: MID
-MID_NUM: 25
-MID_COUNT: 1
-MID_SEQ: TCGTCGCTCG
----
-REC_TYPE: MID
-MID_NUM: 26
-MID_COUNT: 1
-MID_SEQ: ACATACGCGT
----
-REC_TYPE: MID
-MID_NUM: 27
-MID_COUNT: 1
-MID_SEQ: ACGCGAGTAT
----
-REC_TYPE: MID
-MID_NUM: 28
-MID_COUNT: 1
-MID_SEQ: ACTACTATGT
----
-REC_TYPE: MID
-MID_NUM: 29
-MID_COUNT: 1
-MID_SEQ: ACTGTACAGT
----
-REC_TYPE: MID
-MID_NUM: 30
-MID_COUNT: 1
-MID_SEQ: AGACTATACT
----
-REC_TYPE: MID
-MID_NUM: 31
-MID_COUNT: 1
-MID_SEQ: AGCGTCGTCT
----
-REC_TYPE: MID
-MID_NUM: 32
-MID_COUNT: 1
-MID_SEQ: AGTACGCTAT
----
-REC_TYPE: MID
-MID_NUM: 33
-MID_COUNT: 1
-MID_SEQ: ATAGAGTACT
----
-REC_TYPE: MID
-MID_NUM: 34
-MID_COUNT: 1
-MID_SEQ: CACGCTACGT
----
-REC_TYPE: MID
-MID_NUM: 35
-MID_COUNT: 1
-MID_SEQ: CAGTAGACGT
----
-REC_TYPE: MID
-MID_NUM: 36
-MID_COUNT: 1
-MID_SEQ: CGACGTGACT
----
-REC_TYPE: MID
-MID_NUM: 37
-MID_COUNT: 1
-MID_SEQ: TACACACACT
----
-REC_TYPE: MID
-MID_NUM: 38
-MID_COUNT: 1
-MID_SEQ: TACACGTGAT
----
-REC_TYPE: MID
-MID_NUM: 39
-MID_COUNT: 1
-MID_SEQ: TACAGATCGT
----
-REC_TYPE: MID
-MID_NUM: 40
-MID_COUNT: 1
-MID_SEQ: TACGCTGTCT
----
-REC_TYPE: MID
-MID_NUM: 41
-MID_COUNT: 1
-MID_SEQ: TAGTGTAGAT
----
-REC_TYPE: MID
-MID_NUM: 42
-MID_COUNT: 1
-MID_SEQ: TCGATCACGT
----
-REC_TYPE: MID
-MID_NUM: 43
-MID_COUNT: 1
-MID_SEQ: TCGCACTAGT
----
-REC_TYPE: MID
-MID_NUM: 44
-MID_COUNT: 1
-MID_SEQ: TCTAGCGACT
----
-REC_TYPE: MID
-MID_NUM: 45
-MID_COUNT: 1
-MID_SEQ: TCTATACTAT
----
-REC_TYPE: MID
-MID_NUM: 46
-MID_COUNT: 1
-MID_SEQ: TGACGTATGT
----
-REC_TYPE: MID
-MID_NUM: 47
-MID_COUNT: 1
-MID_SEQ: TGTGAGTAGT
----
-REC_TYPE: MID
-MID_NUM: 48
-MID_COUNT: 1
-MID_SEQ: ACAGTATATA
----
-REC_TYPE: MID
-MID_NUM: 49
-MID_COUNT: 1
-MID_SEQ: ACGCGATCGA
----
-REC_TYPE: MID
-MID_NUM: 50
-MID_COUNT: 1
-MID_SEQ: ACTAGCAGTA
----
-REC_TYPE: MID
-MID_NUM: 51
-MID_COUNT: 1
-MID_SEQ: AGCTCACGTA
----
-REC_TYPE: MID
-MID_NUM: 52
-MID_COUNT: 1
-MID_SEQ: AGTATACATA
----
-REC_TYPE: MID
-MID_NUM: 53
-MID_COUNT: 1
-MID_SEQ: AGTCGAGAGA
----
-REC_TYPE: MID
-MID_NUM: 54
-MID_COUNT: 1
-MID_SEQ: AGTGCTACGA
----
-REC_TYPE: MID
-MID_NUM: 55
-MID_COUNT: 1
-MID_SEQ: CGATCGTATA
----
-REC_TYPE: MID
-MID_NUM: 56
-MID_COUNT: 1
-MID_SEQ: CGCAGTACGA
----
-REC_TYPE: MID
-MID_NUM: 57
-MID_COUNT: 1
-MID_SEQ: CGCGTATACA
----
-REC_TYPE: MID
-MID_NUM: 58
-MID_COUNT: 1
-MID_SEQ: CGTACAGTCA
----
-REC_TYPE: MID
-MID_NUM: 59
-MID_COUNT: 1
-MID_SEQ: CGTACTCAGA
----
-REC_TYPE: MID
-MID_NUM: 60
-MID_COUNT: 1
-MID_SEQ: CTACGCTCTA
----
-REC_TYPE: MID
-MID_NUM: 61
-MID_COUNT: 1
-MID_SEQ: CTATAGCGTA
----
-REC_TYPE: MID
-MID_NUM: 62
-MID_COUNT: 1
-MID_SEQ: TACGTCATCA
----
-REC_TYPE: MID
-MID_NUM: 63
-MID_COUNT: 1
-MID_SEQ: TAGTCGCATA
----
-REC_TYPE: MID
-MID_NUM: 64
-MID_COUNT: 1
-MID_SEQ: TATATATACA
----
-REC_TYPE: MID
-MID_NUM: 65
-MID_COUNT: 1
-MID_SEQ: TATGCTAGTA
----
-REC_TYPE: MID
-MID_NUM: 66
-MID_COUNT: 1
-MID_SEQ: TCACGCGAGA
----
-REC_TYPE: MID
-MID_NUM: 67
-MID_COUNT: 1
-MID_SEQ: TCGATAGTGA
----
-REC_TYPE: MID
-MID_NUM: 68
-MID_COUNT: 1
-MID_SEQ: TCGCTGCGTA
----
-REC_TYPE: MID
-MID_NUM: 69
-MID_COUNT: 1
-MID_SEQ: TCTGACGTCA
----
-REC_TYPE: MID
-MID_NUM: 70
-MID_COUNT: 1
-MID_SEQ: TGAGTCAGTA
----
-REC_TYPE: MID
-MID_NUM: 71
-MID_COUNT: 1
-MID_SEQ: TGTAGTGTGA
----
-REC_TYPE: MID
-MID_NUM: 72
-MID_COUNT: 1
-MID_SEQ: TGTCACACGA
----
-REC_TYPE: MID
-MID_NUM: 73
-MID_COUNT: 1
-MID_SEQ: TGTCGTCGCA
----
-REC_TYPE: MID
-MID_NUM: 74
-MID_COUNT: 1
-MID_SEQ: ACACATACGC
----
-REC_TYPE: MID
-MID_NUM: 75
-MID_COUNT: 1
-MID_SEQ: ACAGTCGTGC
----
-REC_TYPE: MID
-MID_NUM: 76
-MID_COUNT: 1
-MID_SEQ: ACATGACGAC
----
-REC_TYPE: MID
-MID_NUM: 77
-MID_COUNT: 1
-MID_SEQ: ACGACAGCTC
----
-REC_TYPE: MID
-MID_NUM: 78
-MID_COUNT: 1
-MID_SEQ: ACGTCTCATC
----
-REC_TYPE: MID
-MID_NUM: 79
-MID_COUNT: 1
-MID_SEQ: ACTCATCTAC
----
-REC_TYPE: MID
-MID_NUM: 80
-MID_COUNT: 1
-MID_SEQ: ACTCGCGCAC
----
-REC_TYPE: MID
-MID_NUM: 81
-MID_COUNT: 1
-MID_SEQ: AGAGCGTCAC
----
-REC_TYPE: MID
-MID_NUM: 82
-MID_COUNT: 1
-MID_SEQ: AGCGACTAGC
----
-REC_TYPE: MID
-MID_NUM: 83
-MID_COUNT: 1
-MID_SEQ: AGTAGTGATC
----
-REC_TYPE: MID
-MID_NUM: 84
-MID_COUNT: 1
-MID_SEQ: AGTGACACAC
----
-REC_TYPE: MID
-MID_NUM: 85
-MID_COUNT: 1
-MID_SEQ: AGTGTATGTC
----
-REC_TYPE: MID
-MID_NUM: 86
-MID_COUNT: 1
-MID_SEQ: ATAGATAGAC
----
-REC_TYPE: MID
-MID_NUM: 87
-MID_COUNT: 1
-MID_SEQ: ATATAGTCGC
----
-REC_TYPE: MID
-MID_NUM: 88
-MID_COUNT: 1
-MID_SEQ: ATCTACTGAC
----
-REC_TYPE: MID
-MID_NUM: 89
-MID_COUNT: 1
-MID_SEQ: CACGTAGATC
----
-REC_TYPE: MID
-MID_NUM: 90
-MID_COUNT: 1
-MID_SEQ: CACGTGTCGC
----
-REC_TYPE: MID
-MID_NUM: 91
-MID_COUNT: 1
-MID_SEQ: CATACTCTAC
----
-REC_TYPE: MID
-MID_NUM: 92
-MID_COUNT: 1
-MID_SEQ: CGACACTATC
----
-REC_TYPE: MID
-MID_NUM: 93
-MID_COUNT: 1
-MID_SEQ: CGAGACGCGC
----
-REC_TYPE: MID
-MID_NUM: 94
-MID_COUNT: 1
-MID_SEQ: CGTATGCGAC
----
-REC_TYPE: MID
-MID_NUM: 95
-MID_COUNT: 1
-MID_SEQ: CGTCGATCTC
----
-REC_TYPE: MID
-MID_NUM: 96
-MID_COUNT: 1
-MID_SEQ: CTACGACTGC
----
-REC_TYPE: MID
-MID_NUM: 97
-MID_COUNT: 1
-MID_SEQ: CTAGTCACTC
----
-REC_TYPE: MID
-MID_NUM: 98
-MID_COUNT: 1
-MID_SEQ: CTCTACGCTC
----
-REC_TYPE: MID
-MID_NUM: 99
-MID_COUNT: 1
-MID_SEQ: CTGTACATAC
----
-REC_TYPE: MID
-MID_NUM: 100
-MID_COUNT: 1
-MID_SEQ: TAGACTGCAC
----
-REC_TYPE: MID
-MID_NUM: 101
-MID_COUNT: 1
-MID_SEQ: TAGCGCGCGC
----
-REC_TYPE: MID
-MID_NUM: 102
-MID_COUNT: 1
-MID_SEQ: TAGCTCTATC
----
-REC_TYPE: MID
-MID_NUM: 103
-MID_COUNT: 1
-MID_SEQ: TATAGACATC
----
-REC_TYPE: MID
-MID_NUM: 104
-MID_COUNT: 1
-MID_SEQ: TATGATACGC
----
-REC_TYPE: MID
-MID_NUM: 105
-MID_COUNT: 1
-MID_SEQ: TCACTCATAC
----
-REC_TYPE: MID
-MID_NUM: 106
-MID_COUNT: 1
-MID_SEQ: TCATCGAGTC
----
-REC_TYPE: MID
-MID_NUM: 107
-MID_COUNT: 1
-MID_SEQ: TCGAGCTCTC
----
-REC_TYPE: MID
-MID_NUM: 108
-MID_COUNT: 1
-MID_SEQ: TCGCAGACAC
----
-REC_TYPE: MID
-MID_NUM: 109
-MID_COUNT: 1
-MID_SEQ: TCTGTCTCGC
----
-REC_TYPE: MID
-MID_NUM: 110
-MID_COUNT: 1
-MID_SEQ: TGAGTGACGC
----
-REC_TYPE: MID
-MID_NUM: 111
-MID_COUNT: 1
-MID_SEQ: TGATGTGTAC
----
-REC_TYPE: MID
-MID_NUM: 112
-MID_COUNT: 1
-MID_SEQ: TGCTATAGAC
----
-REC_TYPE: MID
-MID_NUM: 113
-MID_COUNT: 1
-MID_SEQ: TGCTCGCTAC
----
-REC_TYPE: MID
-MID_NUM: 114
-MID_COUNT: 1
-MID_SEQ: ACGTGCAGCG
----
-REC_TYPE: MID
-MID_NUM: 115
-MID_COUNT: 1
-MID_SEQ: ACTCACAGAG
----
-REC_TYPE: MID
-MID_NUM: 116
-MID_COUNT: 1
-MID_SEQ: AGACTCAGCG
----
-REC_TYPE: MID
-MID_NUM: 117
-MID_COUNT: 1
-MID_SEQ: AGAGAGTGTG
----
-REC_TYPE: MID
-MID_NUM: 118
-MID_COUNT: 1
-MID_SEQ: AGCTATCGCG
----
-REC_TYPE: MID
-MID_NUM: 119
-MID_COUNT: 1
-MID_SEQ: AGTCTGACTG
----
-REC_TYPE: MID
-MID_NUM: 120
-MID_COUNT: 1
-MID_SEQ: AGTGAGCTCG
----
-REC_TYPE: MID
-MID_NUM: 121
-MID_COUNT: 1
-MID_SEQ: ATAGCTCTCG
----
-REC_TYPE: MID
-MID_NUM: 122
-MID_COUNT: 1
-MID_SEQ: ATCACGTGCG
----
-REC_TYPE: MID
-MID_NUM: 123
-MID_COUNT: 1
-MID_SEQ: ATCGTAGCAG
----
-REC_TYPE: MID
-MID_NUM: 124
-MID_COUNT: 1
-MID_SEQ: ATCGTCTGTG
----
-REC_TYPE: MID
-MID_NUM: 125
-MID_COUNT: 1
-MID_SEQ: ATGTACGATG
----
-REC_TYPE: MID
-MID_NUM: 126
-MID_COUNT: 1
-MID_SEQ: ATGTGTCTAG
----
-REC_TYPE: MID
-MID_NUM: 127
-MID_COUNT: 1
-MID_SEQ: CACACGATAG
----
-REC_TYPE: MID
-MID_NUM: 128
-MID_COUNT: 1
-MID_SEQ: CACTCGCACG
----
-REC_TYPE: MID
-MID_NUM: 129
-MID_COUNT: 1
-MID_SEQ: CAGACGTCTG
----
-REC_TYPE: MID
-MID_NUM: 130
-MID_COUNT: 1
-MID_SEQ: CAGTACTGCG
----
-REC_TYPE: MID
-MID_NUM: 131
-MID_COUNT: 1
-MID_SEQ: CGACAGCGAG
----
-REC_TYPE: MID
-MID_NUM: 132
-MID_COUNT: 1
-MID_SEQ: CGATCTGTCG
----
-REC_TYPE: MID
-MID_NUM: 133
-MID_COUNT: 1
-MID_SEQ: CGCGTGCTAG
----
-REC_TYPE: MID
-MID_NUM: 134
-MID_COUNT: 1
-MID_SEQ: CGCTCGAGTG
----
-REC_TYPE: MID
-MID_NUM: 135
-MID_COUNT: 1
-MID_SEQ: CGTGATGACG
----
-REC_TYPE: MID
-MID_NUM: 136
-MID_COUNT: 1
-MID_SEQ: CTATGTACAG
----
-REC_TYPE: MID
-MID_NUM: 137
-MID_COUNT: 1
-MID_SEQ: CTCGATATAG
----
-REC_TYPE: MID
-MID_NUM: 138
-MID_COUNT: 1
-MID_SEQ: CTCGCACGCG
----
-REC_TYPE: MID
-MID_NUM: 139
-MID_COUNT: 1
-MID_SEQ: CTGCGTCACG
----
-REC_TYPE: MID
-MID_NUM: 140
-MID_COUNT: 1
-MID_SEQ: CTGTGCGTCG
----
-REC_TYPE: MID
-MID_NUM: 141
-MID_COUNT: 1
-MID_SEQ: TAGCATACTG
----
-REC_TYPE: MID
-MID_NUM: 142
-MID_COUNT: 1
-MID_SEQ: TATACATGTG
----
-REC_TYPE: MID
-MID_NUM: 143
-MID_COUNT: 1
-MID_SEQ: TATCACTCAG
----
-REC_TYPE: MID
-MID_NUM: 144
-MID_COUNT: 1
-MID_SEQ: TATCTGATAG
----
-REC_TYPE: MID
-MID_NUM: 145
-MID_COUNT: 1
-MID_SEQ: TCGTGACATG
----
-REC_TYPE: MID
-MID_NUM: 146
-MID_COUNT: 1
-MID_SEQ: TCTGATCGAG
----
-REC_TYPE: MID
-MID_NUM: 147
-MID_COUNT: 1
-MID_SEQ: TGACATCTCG
----
-REC_TYPE: MID
-MID_NUM: 148
-MID_COUNT: 1
-MID_SEQ: TGAGCTAGAG
----
-REC_TYPE: MID
-MID_NUM: 149
-MID_COUNT: 1
-MID_SEQ: TGATAGAGCG
----
-REC_TYPE: MID
-MID_NUM: 150
-MID_COUNT: 1
-MID_SEQ: TGCGTGTGCG
----
-REC_TYPE: MID
-MID_NUM: 151
-MID_COUNT: 1
-MID_SEQ: TGCTAGTCAG
----
-REC_TYPE: MID
-MID_NUM: 152
-MID_COUNT: 1
-MID_SEQ: TGTATCACAG
----
-REC_TYPE: MID
-MID_NUM: 153
-MID_COUNT: 1
-MID_SEQ: TGTGCGCGTG
----
+++ /dev/null
-SEQ: ACGAGTGCGTatcg
----
-SEQ: ACGCTCGACAatcg
----
-SEQ: AGACGCACTCatcg
----
-SEQ: AGCACTGTAGatcg
----
-SEQ: ATCAGACACGatcg
----
-SEQ: ATATCGCGAGatcg
----
-SEQ: CGTGTCTCTAatcg
----
-SEQ: CTCGCGTGTCatcg
----
-SEQ: TAGTATCAGCatcg
----
-SEQ: TCTCTATGCGatcg
----
-SEQ: TGATACGTCTatcg
----
-SEQ: TACTGAGCTAatcg
----
-SEQ: CATAGTAGTGatcg
----
-SEQ: CGAGAGATACatcg
----
-SEQ: ATACGACGTAatcg
----
-SEQ: TCACGTACTAatcg
----
-SEQ: CGTCTAGTACatcg
----
-SEQ: TCTACGTAGCatcg
----
-SEQ: TGTACTACTCatcg
----
-SEQ: ACGACTACAGatcg
----
-SEQ: CGTAGACTAGatcg
----
-SEQ: TACGAGTATGatcg
----
-SEQ: TACTCTCGTGatcg
----
-SEQ: TAGAGACGAGatcg
----
-SEQ: TCGTCGCTCGatcg
----
-SEQ: ACATACGCGTatcg
----
-SEQ: ACGCGAGTATatcg
----
-SEQ: ACTACTATGTatcg
----
-SEQ: ACTGTACAGTatcg
----
-SEQ: AGACTATACTatcg
----
-SEQ: AGCGTCGTCTatcg
----
-SEQ: AGTACGCTATatcg
----
-SEQ: ATAGAGTACTatcg
----
-SEQ: CACGCTACGTatcg
----
-SEQ: CAGTAGACGTatcg
----
-SEQ: CGACGTGACTatcg
----
-SEQ: TACACACACTatcg
----
-SEQ: TACACGTGATatcg
----
-SEQ: TACAGATCGTatcg
----
-SEQ: TACGCTGTCTatcg
----
-SEQ: TAGTGTAGATatcg
----
-SEQ: TCGATCACGTatcg
----
-SEQ: TCGCACTAGTatcg
----
-SEQ: TCTAGCGACTatcg
----
-SEQ: TCTATACTATatcg
----
-SEQ: TGACGTATGTatcg
----
-SEQ: TGTGAGTAGTatcg
----
-SEQ: ACAGTATATAatcg
----
-SEQ: ACGCGATCGAatcg
----
-SEQ: ACTAGCAGTAatcg
----
-SEQ: AGCTCACGTAatcg
----
-SEQ: AGTATACATAatcg
----
-SEQ: AGTCGAGAGAatcg
----
-SEQ: AGTGCTACGAatcg
----
-SEQ: CGATCGTATAatcg
----
-SEQ: CGCAGTACGAatcg
----
-SEQ: CGCGTATACAatcg
----
-SEQ: CGTACAGTCAatcg
----
-SEQ: CGTACTCAGAatcg
----
-SEQ: CTACGCTCTAatcg
----
-SEQ: CTATAGCGTAatcg
----
-SEQ: TACGTCATCAatcg
----
-SEQ: TAGTCGCATAatcg
----
-SEQ: TATATATACAatcg
----
-SEQ: TATGCTAGTAatcg
----
-SEQ: TCACGCGAGAatcg
----
-SEQ: TCGATAGTGAatcg
----
-SEQ: TCGCTGCGTAatcg
----
-SEQ: TCTGACGTCAatcg
----
-SEQ: TGAGTCAGTAatcg
----
-SEQ: TGTAGTGTGAatcg
----
-SEQ: TGTCACACGAatcg
----
-SEQ: TGTCGTCGCAatcg
----
-SEQ: ACACATACGCatcg
----
-SEQ: ACAGTCGTGCatcg
----
-SEQ: ACATGACGACatcg
----
-SEQ: ACGACAGCTCatcg
----
-SEQ: ACGTCTCATCatcg
----
-SEQ: ACTCATCTACatcg
----
-SEQ: ACTCGCGCACatcg
----
-SEQ: AGAGCGTCACatcg
----
-SEQ: AGCGACTAGCatcg
----
-SEQ: AGTAGTGATCatcg
----
-SEQ: AGTGACACACatcg
----
-SEQ: AGTGTATGTCatcg
----
-SEQ: ATAGATAGACatcg
----
-SEQ: ATATAGTCGCatcg
----
-SEQ: ATCTACTGACatcg
----
-SEQ: CACGTAGATCatcg
----
-SEQ: CACGTGTCGCatcg
----
-SEQ: CATACTCTACatcg
----
-SEQ: CGACACTATCatcg
----
-SEQ: CGAGACGCGCatcg
----
-SEQ: CGTATGCGACatcg
----
-SEQ: CGTCGATCTCatcg
----
-SEQ: CTACGACTGCatcg
----
-SEQ: CTAGTCACTCatcg
----
-SEQ: CTCTACGCTCatcg
----
-SEQ: CTGTACATACatcg
----
-SEQ: TAGACTGCACatcg
----
-SEQ: TAGCGCGCGCatcg
----
-SEQ: TAGCTCTATCatcg
----
-SEQ: TATAGACATCatcg
----
-SEQ: TATGATACGCatcg
----
-SEQ: TCACTCATACatcg
----
-SEQ: TCATCGAGTCatcg
----
-SEQ: TCGAGCTCTCatcg
----
-SEQ: TCGCAGACACatcg
----
-SEQ: TCTGTCTCGCatcg
----
-SEQ: TGAGTGACGCatcg
----
-SEQ: TGATGTGTACatcg
----
-SEQ: TGCTATAGACatcg
----
-SEQ: TGCTCGCTACatcg
----
-SEQ: ACGTGCAGCGatcg
----
-SEQ: ACTCACAGAGatcg
----
-SEQ: AGACTCAGCGatcg
----
-SEQ: AGAGAGTGTGatcg
----
-SEQ: AGCTATCGCGatcg
----
-SEQ: AGTCTGACTGatcg
----
-SEQ: AGTGAGCTCGatcg
----
-SEQ: ATAGCTCTCGatcg
----
-SEQ: ATCACGTGCGatcg
----
-SEQ: ATCGTAGCAGatcg
----
-SEQ: ATCGTCTGTGatcg
----
-SEQ: ATGTACGATGatcg
----
-SEQ: ATGTGTCTAGatcg
----
-SEQ: CACACGATAGatcg
----
-SEQ: CACTCGCACGatcg
----
-SEQ: CAGACGTCTGatcg
----
-SEQ: CAGTACTGCGatcg
----
-SEQ: CGACAGCGAGatcg
----
-SEQ: CGATCTGTCGatcg
----
-SEQ: CGCGTGCTAGatcg
----
-SEQ: CGCTCGAGTGatcg
----
-SEQ: CGTGATGACGatcg
----
-SEQ: CTATGTACAGatcg
----
-SEQ: CTCGATATAGatcg
----
-SEQ: CTCGCACGCGatcg
----
-SEQ: CTGCGTCACGatcg
----
-SEQ: CTGTGCGTCGatcg
----
-SEQ: TAGCATACTGatcg
----
-SEQ: TATACATGTGatcg
----
-SEQ: TATCACTCAGatcg
----
-SEQ: TATCTGATAGatcg
----
-SEQ: TCGTGACATGatcg
----
-SEQ: TCTGATCGAGatcg
----
-SEQ: TGACATCTCGatcg
----
-SEQ: TGAGCTAGAGatcg
----
-SEQ: TGATAGAGCGatcg
----
-SEQ: TGCGTGTGCGatcg
----
-SEQ: TGCTAGTCAGatcg
----
-SEQ: TGTATCACAGatcg
----
-SEQ: TGTGCGCGTGatcg
----
-REC_TYPE: MID
-MID_NUM: 1
-MID_COUNT: 1
-MID_SEQ: ACGAGTGCGT
----
-REC_TYPE: MID
-MID_NUM: 2
-MID_COUNT: 1
-MID_SEQ: ACGCTCGACA
----
-REC_TYPE: MID
-MID_NUM: 3
-MID_COUNT: 1
-MID_SEQ: AGACGCACTC
----
-REC_TYPE: MID
-MID_NUM: 4
-MID_COUNT: 1
-MID_SEQ: AGCACTGTAG
----
-REC_TYPE: MID
-MID_NUM: 5
-MID_COUNT: 1
-MID_SEQ: ATCAGACACG
----
-REC_TYPE: MID
-MID_NUM: 6
-MID_COUNT: 1
-MID_SEQ: ATATCGCGAG
----
-REC_TYPE: MID
-MID_NUM: 7
-MID_COUNT: 1
-MID_SEQ: CGTGTCTCTA
----
-REC_TYPE: MID
-MID_NUM: 8
-MID_COUNT: 1
-MID_SEQ: CTCGCGTGTC
----
-REC_TYPE: MID
-MID_NUM: 9
-MID_COUNT: 1
-MID_SEQ: TAGTATCAGC
----
-REC_TYPE: MID
-MID_NUM: 10
-MID_COUNT: 1
-MID_SEQ: TCTCTATGCG
----
-REC_TYPE: MID
-MID_NUM: 11
-MID_COUNT: 1
-MID_SEQ: TGATACGTCT
----
-REC_TYPE: MID
-MID_NUM: 12
-MID_COUNT: 1
-MID_SEQ: TACTGAGCTA
----
-REC_TYPE: MID
-MID_NUM: 13
-MID_COUNT: 1
-MID_SEQ: CATAGTAGTG
----
-REC_TYPE: MID
-MID_NUM: 14
-MID_COUNT: 1
-MID_SEQ: CGAGAGATAC
----
-REC_TYPE: MID
-MID_NUM: 15
-MID_COUNT: 1
-MID_SEQ: ATACGACGTA
----
-REC_TYPE: MID
-MID_NUM: 16
-MID_COUNT: 1
-MID_SEQ: TCACGTACTA
----
-REC_TYPE: MID
-MID_NUM: 17
-MID_COUNT: 1
-MID_SEQ: CGTCTAGTAC
----
-REC_TYPE: MID
-MID_NUM: 18
-MID_COUNT: 1
-MID_SEQ: TCTACGTAGC
----
-REC_TYPE: MID
-MID_NUM: 19
-MID_COUNT: 1
-MID_SEQ: TGTACTACTC
----
-REC_TYPE: MID
-MID_NUM: 20
-MID_COUNT: 1
-MID_SEQ: ACGACTACAG
----
-REC_TYPE: MID
-MID_NUM: 21
-MID_COUNT: 1
-MID_SEQ: CGTAGACTAG
----
-REC_TYPE: MID
-MID_NUM: 22
-MID_COUNT: 1
-MID_SEQ: TACGAGTATG
----
-REC_TYPE: MID
-MID_NUM: 23
-MID_COUNT: 1
-MID_SEQ: TACTCTCGTG
----
-REC_TYPE: MID
-MID_NUM: 24
-MID_COUNT: 1
-MID_SEQ: TAGAGACGAG
----
-REC_TYPE: MID
-MID_NUM: 25
-MID_COUNT: 1
-MID_SEQ: TCGTCGCTCG
----
-REC_TYPE: MID
-MID_NUM: 26
-MID_COUNT: 1
-MID_SEQ: ACATACGCGT
----
-REC_TYPE: MID
-MID_NUM: 27
-MID_COUNT: 1
-MID_SEQ: ACGCGAGTAT
----
-REC_TYPE: MID
-MID_NUM: 28
-MID_COUNT: 1
-MID_SEQ: ACTACTATGT
----
-REC_TYPE: MID
-MID_NUM: 29
-MID_COUNT: 1
-MID_SEQ: ACTGTACAGT
----
-REC_TYPE: MID
-MID_NUM: 30
-MID_COUNT: 1
-MID_SEQ: AGACTATACT
----
-REC_TYPE: MID
-MID_NUM: 31
-MID_COUNT: 1
-MID_SEQ: AGCGTCGTCT
----
-REC_TYPE: MID
-MID_NUM: 32
-MID_COUNT: 1
-MID_SEQ: AGTACGCTAT
----
-REC_TYPE: MID
-MID_NUM: 33
-MID_COUNT: 1
-MID_SEQ: ATAGAGTACT
----
-REC_TYPE: MID
-MID_NUM: 34
-MID_COUNT: 1
-MID_SEQ: CACGCTACGT
----
-REC_TYPE: MID
-MID_NUM: 35
-MID_COUNT: 1
-MID_SEQ: CAGTAGACGT
----
-REC_TYPE: MID
-MID_NUM: 36
-MID_COUNT: 1
-MID_SEQ: CGACGTGACT
----
-REC_TYPE: MID
-MID_NUM: 37
-MID_COUNT: 1
-MID_SEQ: TACACACACT
----
-REC_TYPE: MID
-MID_NUM: 38
-MID_COUNT: 1
-MID_SEQ: TACACGTGAT
----
-REC_TYPE: MID
-MID_NUM: 39
-MID_COUNT: 1
-MID_SEQ: TACAGATCGT
----
-REC_TYPE: MID
-MID_NUM: 40
-MID_COUNT: 1
-MID_SEQ: TACGCTGTCT
----
-REC_TYPE: MID
-MID_NUM: 41
-MID_COUNT: 1
-MID_SEQ: TAGTGTAGAT
----
-REC_TYPE: MID
-MID_NUM: 42
-MID_COUNT: 1
-MID_SEQ: TCGATCACGT
----
-REC_TYPE: MID
-MID_NUM: 43
-MID_COUNT: 1
-MID_SEQ: TCGCACTAGT
----
-REC_TYPE: MID
-MID_NUM: 44
-MID_COUNT: 1
-MID_SEQ: TCTAGCGACT
----
-REC_TYPE: MID
-MID_NUM: 45
-MID_COUNT: 1
-MID_SEQ: TCTATACTAT
----
-REC_TYPE: MID
-MID_NUM: 46
-MID_COUNT: 1
-MID_SEQ: TGACGTATGT
----
-REC_TYPE: MID
-MID_NUM: 47
-MID_COUNT: 1
-MID_SEQ: TGTGAGTAGT
----
-REC_TYPE: MID
-MID_NUM: 48
-MID_COUNT: 1
-MID_SEQ: ACAGTATATA
----
-REC_TYPE: MID
-MID_NUM: 49
-MID_COUNT: 1
-MID_SEQ: ACGCGATCGA
----
-REC_TYPE: MID
-MID_NUM: 50
-MID_COUNT: 1
-MID_SEQ: ACTAGCAGTA
----
-REC_TYPE: MID
-MID_NUM: 51
-MID_COUNT: 1
-MID_SEQ: AGCTCACGTA
----
-REC_TYPE: MID
-MID_NUM: 52
-MID_COUNT: 1
-MID_SEQ: AGTATACATA
----
-REC_TYPE: MID
-MID_NUM: 53
-MID_COUNT: 1
-MID_SEQ: AGTCGAGAGA
----
-REC_TYPE: MID
-MID_NUM: 54
-MID_COUNT: 1
-MID_SEQ: AGTGCTACGA
----
-REC_TYPE: MID
-MID_NUM: 55
-MID_COUNT: 1
-MID_SEQ: CGATCGTATA
----
-REC_TYPE: MID
-MID_NUM: 56
-MID_COUNT: 1
-MID_SEQ: CGCAGTACGA
----
-REC_TYPE: MID
-MID_NUM: 57
-MID_COUNT: 1
-MID_SEQ: CGCGTATACA
----
-REC_TYPE: MID
-MID_NUM: 58
-MID_COUNT: 1
-MID_SEQ: CGTACAGTCA
----
-REC_TYPE: MID
-MID_NUM: 59
-MID_COUNT: 1
-MID_SEQ: CGTACTCAGA
----
-REC_TYPE: MID
-MID_NUM: 60
-MID_COUNT: 1
-MID_SEQ: CTACGCTCTA
----
-REC_TYPE: MID
-MID_NUM: 61
-MID_COUNT: 1
-MID_SEQ: CTATAGCGTA
----
-REC_TYPE: MID
-MID_NUM: 62
-MID_COUNT: 1
-MID_SEQ: TACGTCATCA
----
-REC_TYPE: MID
-MID_NUM: 63
-MID_COUNT: 1
-MID_SEQ: TAGTCGCATA
----
-REC_TYPE: MID
-MID_NUM: 64
-MID_COUNT: 1
-MID_SEQ: TATATATACA
----
-REC_TYPE: MID
-MID_NUM: 65
-MID_COUNT: 1
-MID_SEQ: TATGCTAGTA
----
-REC_TYPE: MID
-MID_NUM: 66
-MID_COUNT: 1
-MID_SEQ: TCACGCGAGA
----
-REC_TYPE: MID
-MID_NUM: 67
-MID_COUNT: 1
-MID_SEQ: TCGATAGTGA
----
-REC_TYPE: MID
-MID_NUM: 68
-MID_COUNT: 1
-MID_SEQ: TCGCTGCGTA
----
-REC_TYPE: MID
-MID_NUM: 69
-MID_COUNT: 1
-MID_SEQ: TCTGACGTCA
----
-REC_TYPE: MID
-MID_NUM: 70
-MID_COUNT: 1
-MID_SEQ: TGAGTCAGTA
----
-REC_TYPE: MID
-MID_NUM: 71
-MID_COUNT: 1
-MID_SEQ: TGTAGTGTGA
----
-REC_TYPE: MID
-MID_NUM: 72
-MID_COUNT: 1
-MID_SEQ: TGTCACACGA
----
-REC_TYPE: MID
-MID_NUM: 73
-MID_COUNT: 1
-MID_SEQ: TGTCGTCGCA
----
-REC_TYPE: MID
-MID_NUM: 74
-MID_COUNT: 1
-MID_SEQ: ACACATACGC
----
-REC_TYPE: MID
-MID_NUM: 75
-MID_COUNT: 1
-MID_SEQ: ACAGTCGTGC
----
-REC_TYPE: MID
-MID_NUM: 76
-MID_COUNT: 1
-MID_SEQ: ACATGACGAC
----
-REC_TYPE: MID
-MID_NUM: 77
-MID_COUNT: 1
-MID_SEQ: ACGACAGCTC
----
-REC_TYPE: MID
-MID_NUM: 78
-MID_COUNT: 1
-MID_SEQ: ACGTCTCATC
----
-REC_TYPE: MID
-MID_NUM: 79
-MID_COUNT: 1
-MID_SEQ: ACTCATCTAC
----
-REC_TYPE: MID
-MID_NUM: 80
-MID_COUNT: 1
-MID_SEQ: ACTCGCGCAC
----
-REC_TYPE: MID
-MID_NUM: 81
-MID_COUNT: 1
-MID_SEQ: AGAGCGTCAC
----
-REC_TYPE: MID
-MID_NUM: 82
-MID_COUNT: 1
-MID_SEQ: AGCGACTAGC
----
-REC_TYPE: MID
-MID_NUM: 83
-MID_COUNT: 1
-MID_SEQ: AGTAGTGATC
----
-REC_TYPE: MID
-MID_NUM: 84
-MID_COUNT: 1
-MID_SEQ: AGTGACACAC
----
-REC_TYPE: MID
-MID_NUM: 85
-MID_COUNT: 1
-MID_SEQ: AGTGTATGTC
----
-REC_TYPE: MID
-MID_NUM: 86
-MID_COUNT: 1
-MID_SEQ: ATAGATAGAC
----
-REC_TYPE: MID
-MID_NUM: 87
-MID_COUNT: 1
-MID_SEQ: ATATAGTCGC
----
-REC_TYPE: MID
-MID_NUM: 88
-MID_COUNT: 1
-MID_SEQ: ATCTACTGAC
----
-REC_TYPE: MID
-MID_NUM: 89
-MID_COUNT: 1
-MID_SEQ: CACGTAGATC
----
-REC_TYPE: MID
-MID_NUM: 90
-MID_COUNT: 1
-MID_SEQ: CACGTGTCGC
----
-REC_TYPE: MID
-MID_NUM: 91
-MID_COUNT: 1
-MID_SEQ: CATACTCTAC
----
-REC_TYPE: MID
-MID_NUM: 92
-MID_COUNT: 1
-MID_SEQ: CGACACTATC
----
-REC_TYPE: MID
-MID_NUM: 93
-MID_COUNT: 1
-MID_SEQ: CGAGACGCGC
----
-REC_TYPE: MID
-MID_NUM: 94
-MID_COUNT: 1
-MID_SEQ: CGTATGCGAC
----
-REC_TYPE: MID
-MID_NUM: 95
-MID_COUNT: 1
-MID_SEQ: CGTCGATCTC
----
-REC_TYPE: MID
-MID_NUM: 96
-MID_COUNT: 1
-MID_SEQ: CTACGACTGC
----
-REC_TYPE: MID
-MID_NUM: 97
-MID_COUNT: 1
-MID_SEQ: CTAGTCACTC
----
-REC_TYPE: MID
-MID_NUM: 98
-MID_COUNT: 1
-MID_SEQ: CTCTACGCTC
----
-REC_TYPE: MID
-MID_NUM: 99
-MID_COUNT: 1
-MID_SEQ: CTGTACATAC
----
-REC_TYPE: MID
-MID_NUM: 100
-MID_COUNT: 1
-MID_SEQ: TAGACTGCAC
----
-REC_TYPE: MID
-MID_NUM: 101
-MID_COUNT: 1
-MID_SEQ: TAGCGCGCGC
----
-REC_TYPE: MID
-MID_NUM: 102
-MID_COUNT: 1
-MID_SEQ: TAGCTCTATC
----
-REC_TYPE: MID
-MID_NUM: 103
-MID_COUNT: 1
-MID_SEQ: TATAGACATC
----
-REC_TYPE: MID
-MID_NUM: 104
-MID_COUNT: 1
-MID_SEQ: TATGATACGC
----
-REC_TYPE: MID
-MID_NUM: 105
-MID_COUNT: 1
-MID_SEQ: TCACTCATAC
----
-REC_TYPE: MID
-MID_NUM: 106
-MID_COUNT: 1
-MID_SEQ: TCATCGAGTC
----
-REC_TYPE: MID
-MID_NUM: 107
-MID_COUNT: 1
-MID_SEQ: TCGAGCTCTC
----
-REC_TYPE: MID
-MID_NUM: 108
-MID_COUNT: 1
-MID_SEQ: TCGCAGACAC
----
-REC_TYPE: MID
-MID_NUM: 109
-MID_COUNT: 1
-MID_SEQ: TCTGTCTCGC
----
-REC_TYPE: MID
-MID_NUM: 110
-MID_COUNT: 1
-MID_SEQ: TGAGTGACGC
----
-REC_TYPE: MID
-MID_NUM: 111
-MID_COUNT: 1
-MID_SEQ: TGATGTGTAC
----
-REC_TYPE: MID
-MID_NUM: 112
-MID_COUNT: 1
-MID_SEQ: TGCTATAGAC
----
-REC_TYPE: MID
-MID_NUM: 113
-MID_COUNT: 1
-MID_SEQ: TGCTCGCTAC
----
-REC_TYPE: MID
-MID_NUM: 114
-MID_COUNT: 1
-MID_SEQ: ACGTGCAGCG
----
-REC_TYPE: MID
-MID_NUM: 115
-MID_COUNT: 1
-MID_SEQ: ACTCACAGAG
----
-REC_TYPE: MID
-MID_NUM: 116
-MID_COUNT: 1
-MID_SEQ: AGACTCAGCG
----
-REC_TYPE: MID
-MID_NUM: 117
-MID_COUNT: 1
-MID_SEQ: AGAGAGTGTG
----
-REC_TYPE: MID
-MID_NUM: 118
-MID_COUNT: 1
-MID_SEQ: AGCTATCGCG
----
-REC_TYPE: MID
-MID_NUM: 119
-MID_COUNT: 1
-MID_SEQ: AGTCTGACTG
----
-REC_TYPE: MID
-MID_NUM: 120
-MID_COUNT: 1
-MID_SEQ: AGTGAGCTCG
----
-REC_TYPE: MID
-MID_NUM: 121
-MID_COUNT: 1
-MID_SEQ: ATAGCTCTCG
----
-REC_TYPE: MID
-MID_NUM: 122
-MID_COUNT: 1
-MID_SEQ: ATCACGTGCG
----
-REC_TYPE: MID
-MID_NUM: 123
-MID_COUNT: 1
-MID_SEQ: ATCGTAGCAG
----
-REC_TYPE: MID
-MID_NUM: 124
-MID_COUNT: 1
-MID_SEQ: ATCGTCTGTG
----
-REC_TYPE: MID
-MID_NUM: 125
-MID_COUNT: 1
-MID_SEQ: ATGTACGATG
----
-REC_TYPE: MID
-MID_NUM: 126
-MID_COUNT: 1
-MID_SEQ: ATGTGTCTAG
----
-REC_TYPE: MID
-MID_NUM: 127
-MID_COUNT: 1
-MID_SEQ: CACACGATAG
----
-REC_TYPE: MID
-MID_NUM: 128
-MID_COUNT: 1
-MID_SEQ: CACTCGCACG
----
-REC_TYPE: MID
-MID_NUM: 129
-MID_COUNT: 1
-MID_SEQ: CAGACGTCTG
----
-REC_TYPE: MID
-MID_NUM: 130
-MID_COUNT: 1
-MID_SEQ: CAGTACTGCG
----
-REC_TYPE: MID
-MID_NUM: 131
-MID_COUNT: 1
-MID_SEQ: CGACAGCGAG
----
-REC_TYPE: MID
-MID_NUM: 132
-MID_COUNT: 1
-MID_SEQ: CGATCTGTCG
----
-REC_TYPE: MID
-MID_NUM: 133
-MID_COUNT: 1
-MID_SEQ: CGCGTGCTAG
----
-REC_TYPE: MID
-MID_NUM: 134
-MID_COUNT: 1
-MID_SEQ: CGCTCGAGTG
----
-REC_TYPE: MID
-MID_NUM: 135
-MID_COUNT: 1
-MID_SEQ: CGTGATGACG
----
-REC_TYPE: MID
-MID_NUM: 136
-MID_COUNT: 1
-MID_SEQ: CTATGTACAG
----
-REC_TYPE: MID
-MID_NUM: 137
-MID_COUNT: 1
-MID_SEQ: CTCGATATAG
----
-REC_TYPE: MID
-MID_NUM: 138
-MID_COUNT: 1
-MID_SEQ: CTCGCACGCG
----
-REC_TYPE: MID
-MID_NUM: 139
-MID_COUNT: 1
-MID_SEQ: CTGCGTCACG
----
-REC_TYPE: MID
-MID_NUM: 140
-MID_COUNT: 1
-MID_SEQ: CTGTGCGTCG
----
-REC_TYPE: MID
-MID_NUM: 141
-MID_COUNT: 1
-MID_SEQ: TAGCATACTG
----
-REC_TYPE: MID
-MID_NUM: 142
-MID_COUNT: 1
-MID_SEQ: TATACATGTG
----
-REC_TYPE: MID
-MID_NUM: 143
-MID_COUNT: 1
-MID_SEQ: TATCACTCAG
----
-REC_TYPE: MID
-MID_NUM: 144
-MID_COUNT: 1
-MID_SEQ: TATCTGATAG
----
-REC_TYPE: MID
-MID_NUM: 145
-MID_COUNT: 1
-MID_SEQ: TCGTGACATG
----
-REC_TYPE: MID
-MID_NUM: 146
-MID_COUNT: 1
-MID_SEQ: TCTGATCGAG
----
-REC_TYPE: MID
-MID_NUM: 147
-MID_COUNT: 1
-MID_SEQ: TGACATCTCG
----
-REC_TYPE: MID
-MID_NUM: 148
-MID_COUNT: 1
-MID_SEQ: TGAGCTAGAG
----
-REC_TYPE: MID
-MID_NUM: 149
-MID_COUNT: 1
-MID_SEQ: TGATAGAGCG
----
-REC_TYPE: MID
-MID_NUM: 150
-MID_COUNT: 1
-MID_SEQ: TGCGTGTGCG
----
-REC_TYPE: MID
-MID_NUM: 151
-MID_COUNT: 1
-MID_SEQ: TGCTAGTCAG
----
-REC_TYPE: MID
-MID_NUM: 152
-MID_COUNT: 1
-MID_SEQ: TGTATCACAG
----
-REC_TYPE: MID
-MID_NUM: 153
-MID_COUNT: 1
-MID_SEQ: TGTGCGCGTG
----
+++ /dev/null
-SCORES: hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhKhe
-SEQ: TTGGTCGCTCGCTCCGCGACCTCAGATCAGACGTGG
-SEQ_LEN: 36
-SEQ_NAME: HWI-EAS157_20FFGAAXX:2:1:888:434
----
-SCORES: hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhghPh
-SEQ: TTCTTGTTGTTGAAATACAACGATGGTTTTTCATAT
-SEQ_LEN: 36
-SEQ_NAME: HWI-EAS157_20FFGAAXX:2:1:898:373
----
-SCORES: hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh[hhh
-SEQ: TGAATGCCTGGGAGGAGTCCCGGAGTGTAGAGATTT
-SEQ_LEN: 36
-SEQ_NAME: HWI-EAS157_20FFGAAXX:2:1:907:487
----
+++ /dev/null
-SCORES: hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhKhe
-SEQ: TTGGTCGCTCGCTCCGCGACCTCAGATCAGACGTGG
-SEQ_LEN: 36
-SEQ_NAME: HWI-EAS157_20FFGAAXX:2:1:888:434
----
+++ /dev/null
-SCORES: 40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;11;40;37;
-SEQ: TTGGTCGCTCGCTCCGCGACCTCAGATCAGACGTGG
-SEQ_LEN: 36
-SEQ_NAME: HWI-EAS157_20FFGAAXX:2:1:888:434
----
-SCORES: 40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;39;40;16;40;
-SEQ: TTCTTGTTGTTGAAATACAACGATGGTTTTTCATAT
-SEQ_LEN: 36
-SEQ_NAME: HWI-EAS157_20FFGAAXX:2:1:898:373
----
-SCORES: 40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;40;27;40;40;40;
-SEQ: TGAATGCCTGGGAGGAGTCCCGGAGTGTAGAGATTT
-SEQ_LEN: 36
-SEQ_NAME: HWI-EAS157_20FFGAAXX:2:1:907:487
----
+++ /dev/null
-SCORES: hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhKhe
-SEQ: TTGGTCGCTCGCTCCGCGACCTCAGATCAGACGtGG
-SEQ_LEN: 36
-SEQ_NAME: HWI-EAS157_20FFGAAXX:2:1:888:434
----
-SCORES: hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhghPh
-SEQ: TTCTTGTTGTTGAAATACAACGATGGTTTTTCATaT
-SEQ_LEN: 36
-SEQ_NAME: HWI-EAS157_20FFGAAXX:2:1:898:373
----
-SCORES: hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh[hhh
-SEQ: TGAATGCCTGGGAGGAGTCCCGGAGTGTAGAGATTT
-SEQ_LEN: 36
-SEQ_NAME: HWI-EAS157_20FFGAAXX:2:1:907:487
----
+++ /dev/null
-SCORES: hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhKhe
-SEQ: TTGGTCGCTCGCTCCGCGACCTCAGATCAGACGtGG
-SEQ_LEN: 36
-SEQ_NAME: HWI-EAS157_20FFGAAXX:2:1:888:434
----
-SCORES: hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhghPh
-SEQ: TTCTTGTTGTTGAAATACAACGATGGTTTTTCATaT
-SEQ_LEN: 36
-SEQ_NAME: HWI-EAS157_20FFGAAXX:2:1:898:373
----
-SCORES: hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh[hhh
-SEQ: TGAATGCCTGGGAGGAGTCCCGGAGTGTAGAGaTTT
-SEQ_LEN: 36
-SEQ_NAME: HWI-EAS157_20FFGAAXX:2:1:907:487
----
+++ /dev/null
-SEQ_NAME: test_RL12_0_mismatches
-SEQ: atcgACTCGCGTCGTgtgactgact
-SEQ_LEN: 25
----
-SEQ_NAME: test_RL12_1_mismatches
-SEQ: atcgACTCGCcTCGTgtgactgact
-SEQ_LEN: 25
----
-SEQ_NAME: test_RL12_2_mismatches
-SEQ: atcgACTCaCcTCGTgtgactgact
-SEQ_LEN: 25
----
-SEQ_NAME: test_RL12_2_mismatches_repeat
-SEQ: atcgACTCaCcTCGTgtgactgact
-SEQ_LEN: 25
----
-SEQ_NAME: test_GS99_0_mismatches
-SEQ: atcgCTGTACATACgtagtagtagt
-SEQ_LEN: 25
----
-SEQ_NAME: test_GS99_1_mismatches
-SEQ: atcgCTGTtCATACgtagtagtagt
-SEQ_LEN: 25
----
-SEQ_NAME: test_GS99_2_mismatches
-SEQ: atcgCTGTtCAgACgtagtagtagt
-SEQ_LEN: 25
----
-SEQ_NAME: test_GS99_2_mismatches_repeat
-SEQ: atcgCTGTtCAgACgtagtagtagt
-SEQ_LEN: 25
----
+++ /dev/null
-SEQ_NAME: test_RL12_0_mismatches
-SEQ: gtgactgact
-SEQ_LEN: 10
-MID: ACTCGCGTCGT
-MID_NAME: RL12
-MID_POS: 4
-MID_LEN: 11
-MID_MISMATCHES: 0
----
-SEQ_NAME: test_RL12_1_mismatches
-SEQ: atcgACTCGCcTCGTgtgactgact
-SEQ_LEN: 25
----
-SEQ_NAME: test_RL12_2_mismatches
-SEQ: atcgACTCaCcTCGTgtgactgact
-SEQ_LEN: 25
----
-SEQ_NAME: test_RL12_2_mismatches_repeat
-SEQ: atcgACTCaCcTCGTgtgactgact
-SEQ_LEN: 25
----
-SEQ_NAME: test_GS99_0_mismatches
-SEQ: gtagtagtagt
-SEQ_LEN: 11
-MID: CTGTACATAC
-MID_NAME: MID99
-MID_POS: 4
-MID_LEN: 10
-MID_MISMATCHES: 0
----
-SEQ_NAME: test_GS99_1_mismatches
-SEQ: atcgCTGTtCATACgtagtagtagt
-SEQ_LEN: 25
----
-SEQ_NAME: test_GS99_2_mismatches
-SEQ: atcgCTGTtCAgACgtagtagtagt
-SEQ_LEN: 25
----
-SEQ_NAME: test_GS99_2_mismatches_repeat
-SEQ: atcgCTGTtCAgACgtagtagtagt
-SEQ_LEN: 25
----
+++ /dev/null
-SEQ_NAME: test_RL12_0_mismatches
-SEQ: gtgactgact
-SEQ_LEN: 10
-MID: ACTCGCGTCGT
-MID_NAME: RL12
-MID_POS: 4
-MID_LEN: 11
-MID_MISMATCHES: 0
----
-SEQ_NAME: test_RL12_1_mismatches
-SEQ: gtgactgact
-SEQ_LEN: 10
-MID: ACTCGCGTCGT
-MID_NAME: RL12
-MID_POS: 4
-MID_LEN: 11
-MID_MISMATCHES: 1
----
-SEQ_NAME: test_RL12_2_mismatches
-SEQ: atcgACTCaCcTCGTgtgactgact
-SEQ_LEN: 25
----
-SEQ_NAME: test_RL12_2_mismatches_repeat
-SEQ: atcgACTCaCcTCGTgtgactgact
-SEQ_LEN: 25
----
-SEQ_NAME: test_GS99_0_mismatches
-SEQ: gtagtagtagt
-SEQ_LEN: 11
-MID: CTGTACATAC
-MID_NAME: MID99
-MID_POS: 4
-MID_LEN: 10
-MID_MISMATCHES: 0
----
-SEQ_NAME: test_GS99_1_mismatches
-SEQ: gtagtagtagt
-SEQ_LEN: 11
-MID: CTGTACATAC
-MID_NAME: MID99
-MID_POS: 4
-MID_LEN: 10
-MID_MISMATCHES: 1
----
-SEQ_NAME: test_GS99_2_mismatches
-SEQ: atcgCTGTtCAgACgtagtagtagt
-SEQ_LEN: 25
----
-SEQ_NAME: test_GS99_2_mismatches_repeat
-SEQ: atcgCTGTtCAgACgtagtagtagt
-SEQ_LEN: 25
----
+++ /dev/null
-SEQ_NAME: test_RL12_0_mismatches
-SEQ: gtgactgact
-SEQ_LEN: 10
-MID: ACTCGCGTCGT
-MID_NAME: RL12
-MID_POS: 4
-MID_LEN: 11
-MID_MISMATCHES: 0
----
-SEQ_NAME: test_RL12_1_mismatches
-SEQ: gtgactgact
-SEQ_LEN: 10
-MID: ACTCGCGTCGT
-MID_NAME: RL12
-MID_POS: 4
-MID_LEN: 11
-MID_MISMATCHES: 1
----
-SEQ_NAME: test_RL12_2_mismatches
-SEQ: gtgactgact
-SEQ_LEN: 10
-MID: ACTCGCGTCGT
-MID_NAME: RL12
-MID_POS: 4
-MID_LEN: 11
-MID_MISMATCHES: 2
----
-SEQ_NAME: test_RL12_2_mismatches_repeat
-SEQ: gtgactgact
-SEQ_LEN: 10
-MID: ACTCGCGTCGT
-MID_NAME: RL12
-MID_POS: 4
-MID_LEN: 11
-MID_MISMATCHES: 2
----
-SEQ_NAME: test_GS99_0_mismatches
-SEQ: gtagtagtagt
-SEQ_LEN: 11
-MID: CTGTACATAC
-MID_NAME: MID99
-MID_POS: 4
-MID_LEN: 10
-MID_MISMATCHES: 0
----
-SEQ_NAME: test_GS99_1_mismatches
-SEQ: gtagtagtagt
-SEQ_LEN: 11
-MID: CTGTACATAC
-MID_NAME: MID99
-MID_POS: 4
-MID_LEN: 10
-MID_MISMATCHES: 1
----
-SEQ_NAME: test_GS99_2_mismatches
-SEQ: gtagtagtagt
-SEQ_LEN: 11
-MID: CTGTACATAC
-MID_NAME: MID99
-MID_POS: 4
-MID_LEN: 10
-MID_MISMATCHES: 2
----
-SEQ_NAME: test_GS99_2_mismatches_repeat
-SEQ: gtagtagtagt
-SEQ_LEN: 11
-MID: CTGTACATAC
-MID_NAME: MID99
-MID_POS: 4
-MID_LEN: 10
-MID_MISMATCHES: 2
----
+++ /dev/null
-SEQ_NAME: test_RL12_0_mismatches
-SEQ: atcgACTCGCGTCGTgtgactgact
-SEQ_LEN: 25
----
-SEQ_NAME: test_RL12_1_mismatches
-SEQ: atcgACTCGCcTCGTgtgactgact
-SEQ_LEN: 25
----
-SEQ_NAME: test_RL12_2_mismatches
-SEQ: atcgACTCaCcTCGTgtgactgact
-SEQ_LEN: 25
----
-SEQ_NAME: test_RL12_2_mismatches_repeat
-SEQ: atcgACTCaCcTCGTgtgactgact
-SEQ_LEN: 25
----
-SEQ_NAME: test_GS99_0_mismatches
-SEQ: gtagtagtagt
-SEQ_LEN: 11
-MID: CTGTACATAC
-MID_NAME: MID99
-MID_POS: 4
-MID_LEN: 10
-MID_MISMATCHES: 0
----
-SEQ_NAME: test_GS99_1_mismatches
-SEQ: gtagtagtagt
-SEQ_LEN: 11
-MID: CTGTACATAC
-MID_NAME: MID99
-MID_POS: 4
-MID_LEN: 10
-MID_MISMATCHES: 1
----
-SEQ_NAME: test_GS99_2_mismatches
-SEQ: gtagtagtagt
-SEQ_LEN: 11
-MID: CTGTACATAC
-MID_NAME: MID99
-MID_POS: 4
-MID_LEN: 10
-MID_MISMATCHES: 2
----
-SEQ_NAME: test_GS99_2_mismatches_repeat
-SEQ: gtagtagtagt
-SEQ_LEN: 11
-MID: CTGTACATAC
-MID_NAME: MID99
-MID_POS: 4
-MID_LEN: 10
-MID_MISMATCHES: 2
----
+++ /dev/null
-SEQ_NAME: test_RL12_0_mismatches
-SEQ: gtgactgact
-SEQ_LEN: 10
-MID: ACTCGCGTCGT
-MID_NAME: RL12
-MID_POS: 4
-MID_LEN: 11
-MID_MISMATCHES: 0
----
-SEQ_NAME: test_RL12_1_mismatches
-SEQ: gtgactgact
-SEQ_LEN: 10
-MID: ACTCGCGTCGT
-MID_NAME: RL12
-MID_POS: 4
-MID_LEN: 11
-MID_MISMATCHES: 1
----
-SEQ_NAME: test_RL12_2_mismatches
-SEQ: gtgactgact
-SEQ_LEN: 10
-MID: ACTCGCGTCGT
-MID_NAME: RL12
-MID_POS: 4
-MID_LEN: 11
-MID_MISMATCHES: 2
----
-SEQ_NAME: test_RL12_2_mismatches_repeat
-SEQ: gtgactgact
-SEQ_LEN: 10
-MID: ACTCGCGTCGT
-MID_NAME: RL12
-MID_POS: 4
-MID_LEN: 11
-MID_MISMATCHES: 2
----
-SEQ_NAME: test_GS99_0_mismatches
-SEQ: atcgCTGTACATACgtagtagtagt
-SEQ_LEN: 25
----
-SEQ_NAME: test_GS99_1_mismatches
-SEQ: atcgCTGTtCATACgtagtagtagt
-SEQ_LEN: 25
----
-SEQ_NAME: test_GS99_2_mismatches
-SEQ: atcgCTGTtCAgACgtagtagtagt
-SEQ_LEN: 25
----
-SEQ_NAME: test_GS99_2_mismatches_repeat
-SEQ: atcgCTGTtCAgACgtagtagtagt
-SEQ_LEN: 25
----
+++ /dev/null
-#!/bin/bash
-
-source "$BP_DIR/bp_test/lib/test.sh"
-
-run "$bp -I $in.1 -p 4 -O $tmp"
-assert_no_diff $tmp $out.1
-clean
-
-run "$bp -I $in.2 -O $tmp"
-assert_no_diff $tmp $out.2
-clean
+++ /dev/null
-#!/bin/bash
-
-source "$BP_DIR/bp_test/lib/test.sh"
-
-run "$bp -i $in -O $tmp"
-assert_no_diff $tmp $out.1
-clean
-
-run "$bp -i $in -n 1 -O $tmp"
-assert_no_diff $tmp $out.2
-clean
-
-run "$bp -i $in -c -O $tmp"
-assert_no_diff $tmp $out.3
-clean
-
-run "$bp -i $in -s -O $tmp"
-assert_no_diff $tmp $out.4
-clean
-
-run "$bp -i $in -s -C 30 -O $tmp"
-assert_no_diff $tmp $out.5
-clean
+++ /dev/null
-#!/bin/bash
-
-source "$BP_DIR/bp_test/lib/test.sh"
-
-run "$bp -I $in -O $tmp"
-assert_no_diff $tmp $out.1
-clean
-
-run "$bp -I $in -p 4 -O $tmp"
-assert_no_diff $tmp $out.2
-clean
-
-run "$bp -I $in -p 4 -m 1 -O $tmp"
-assert_no_diff $tmp $out.3
-clean
-
-run "$bp -I $in -p 4 -m 2 -O $tmp"
-assert_no_diff $tmp $out.4
-clean
-
-run "$bp -I $in -p 4 -m 2 -g -O $tmp"
-assert_no_diff $tmp $out.5
-clean
-
-run "$bp -I $in -p 4 -m 2 -r -O $tmp"
-assert_no_diff $tmp $out.6
-clean
projects / biopieces.git / commitdiff