fixed bug in clip_adaptor where LEFT_POS > RIGHT_POS

git-svn-id: http://biopieces.googlecode.com/svn/trunk@1911 74ccb610-7750-0410-82ae-013aeee3265d

diff --git a/bp_test/in/clip_adaptor.in b/bp_test/in/clip_adaptor.in
index e8e5b8ebc5b958aebee20862f3b02e96ef84a8cd..13d1a4b08b78bea8b6774a85a892be97a060f707 100644 (file)
--- a/bp_test/in/clip_adaptor.in
+++ b/bp_test/in/clip_adaptor.in
@@ -25,3 +25,14 @@ ADAPTOR_POS_RIGHT: 72
 ADAPTOR_LEN_RIGHT: 10
 ADAPTOR_PAT_RIGHT: tgctagctag
 ---
+SEQ_NAME: test
+SEQ: GATCGATCGTacgagcagcatctgacgtatcgatcgttgattagttgctagctatgcagtctacgacgagcaTGCTAGCTAG
+SEQ_LEN: 82
+SCORES: @ABCDEFGHIJKLMNOPQRSTUVWXYZ[\]^_`abcdefghhgfedcba`_^]\[ZYXWVUTSRQPONMLKJIHGFEDChhh
+ADAPTOR_POS_LEFT: 72
+ADAPTOR_LEN_LEFT: 10
+ADAPTOR_PAT_LEFT: tgctagctag
+ADAPTOR_POS_RIGHT: 0
+ADAPTOR_LEN_RIGHT: 10
+ADAPTOR_PAT_RIGHT: gatcgatcgt
+---

diff --git a/bp_test/out/clip_adaptor.out.1 b/bp_test/out/clip_adaptor.out.1
index 1a034570f8c6629ae2511d1e4b135ff88ba48eaf..cdac97824dc3e26d7124725bef3c2d8eed6aceb8 100644 (file)
--- a/bp_test/out/clip_adaptor.out.1
+++ b/bp_test/out/clip_adaptor.out.1
@@ -25,3 +25,14 @@ ADAPTOR_POS_RIGHT: 72
 ADAPTOR_LEN_RIGHT: 10
 ADAPTOR_PAT_RIGHT: tgctagctag
 ---
+SEQ_NAME: test
+SEQ: 
+SEQ_LEN: 0
+SCORES: 
+ADAPTOR_POS_LEFT: 72
+ADAPTOR_LEN_LEFT: 10
+ADAPTOR_PAT_LEFT: tgctagctag
+ADAPTOR_POS_RIGHT: 0
+ADAPTOR_LEN_RIGHT: 10
+ADAPTOR_PAT_RIGHT: gatcgatcgt
+---