added tests for uniq_vals

git-svn-id: http://biopieces.googlecode.com/svn/trunk@1458 74ccb610-7750-0410-82ae-013aeee3265d

diff --git a/bp_test/in/uniq_vals.in b/bp_test/in/uniq_vals.in
new file mode 100644 (file)
index 0000000..e30ee97
--- /dev/null
+++ b/bp_test/in/uniq_vals.in
@@ -0,0 +1,20 @@
+SEQ_NAME: test1
+SEQ: TACGATGCTAGCNATCYGACNACTGACTGACN
+SEQ_LEN: 32
+---
+SEQ_NAME: test2
+SEQ: TACGATGCTAGCNATCYGACNACTGACTGACN
+SEQ_LEN: 32
+---
+SEQ_NAME: test3
+SEQ: TACGATGCTAGCNATCYGACNACTGACTGACN
+SEQ_LEN: 32
+---
+SEQ_NAME: test4
+SEQ: TACGATGCTAGCNATCYGACN
+SEQ_LEN: 21
+---
+SEQ_NAME: test5
+SEQ: TACGATGCTAGC
+SEQ_LEN: 12
+---

diff --git a/bp_test/out/uniq_vals.out.1 b/bp_test/out/uniq_vals.out.1
new file mode 100644 (file)
index 0000000..46ac649
--- /dev/null
+++ b/bp_test/out/uniq_vals.out.1
@@ -0,0 +1,12 @@
+SEQ: TACGATGCTAGCNATCYGACNACTGACTGACN
+SEQ_LEN: 32
+SEQ_NAME: test1
+---
+SEQ: TACGATGCTAGCNATCYGACN
+SEQ_LEN: 21
+SEQ_NAME: test4
+---
+SEQ: TACGATGCTAGC
+SEQ_LEN: 12
+SEQ_NAME: test5
+---

diff --git a/bp_test/out/uniq_vals.out.2 b/bp_test/out/uniq_vals.out.2
new file mode 100644 (file)
index 0000000..e965f5c
--- /dev/null
+++ b/bp_test/out/uniq_vals.out.2
@@ -0,0 +1,8 @@
+SEQ: TACGATGCTAGCNATCYGACNACTGACTGACN
+SEQ_LEN: 32
+SEQ_NAME: test2
+---
+SEQ: TACGATGCTAGCNATCYGACNACTGACTGACN
+SEQ_LEN: 32
+SEQ_NAME: test3
+---

diff --git a/bp_test/test/test_uniq_vals b/bp_test/test/test_uniq_vals
new file mode 100755 (executable)
index 0000000..e948107
--- /dev/null
+++ b/bp_test/test/test_uniq_vals
@@ -0,0 +1,11 @@
+#!/bin/bash
+
+source "$BP_DIR/bp_test/lib/test.sh"
+
+run "$bp -I $in -k SEQ -O $tmp"
+assert_no_diff $tmp $out.1
+clean
+
+run "$bp -I $in -k SEQ -i -O $tmp"
+assert_no_diff $tmp $out.2
+clean