added tests for remove_indels

git-svn-id: http://biopieces.googlecode.com/svn/trunk@1466 74ccb610-7750-0410-82ae-013aeee3265d

diff --git a/bp_test/in/remove_indels.in b/bp_test/in/remove_indels.in
new file mode 100644 (file)
index 0000000..306ef68
--- /dev/null
+++ b/bp_test/in/remove_indels.in
@@ -0,0 +1,4 @@
+SEQ_NAME: test
+SEQ: ~~--...TACGC..~~--NATCYGACNACTGACTGACN..~~--__
+SEQ_LEN: 46
+---

diff --git a/bp_test/out/remove_indels.out.1 b/bp_test/out/remove_indels.out.1
new file mode 100644 (file)
index 0000000..29e8644
--- /dev/null
+++ b/bp_test/out/remove_indels.out.1
@@ -0,0 +1,4 @@
+SEQ: TACGCNATCYGACNACTGACTGACN__
+SEQ_LEN: 27
+SEQ_NAME: test
+---

diff --git a/bp_test/test/test_remove_indels b/bp_test/test/test_remove_indels
new file mode 100755 (executable)
index 0000000..61c5709
--- /dev/null
+++ b/bp_test/test/test_remove_indels
@@ -0,0 +1,7 @@
+#!/bin/bash
+
+source "$BP_DIR/bp_test/lib/test.sh"
+
+run "$bp -I $in -O $tmp"
+assert_no_diff $tmp $out.1
+clean