upgraded tests of read_sff

git-svn-id: http://biopieces.googlecode.com/svn/trunk@2148 74ccb610-7750-0410-82ae-013aeee3265d

diff --git a/bp_test/out/read_sff.out.1 b/bp_test/out/read_sff.out.1
index ed88d7c0b57cc738a1006533ad27ebedcc4ab867..d1c35ce30c98234c53987acf3afd7bcf86d43181 100644 (file)
--- a/bp_test/out/read_sff.out.1
+++ b/bp_test/out/read_sff.out.1
@@ -5,7 +5,7 @@ CLIP_QUAL_LEFT: 4
 CLIP_QUAL_RIGHT: 277
 CLIP_ADAPTOR_LEFT: -1
 CLIP_ADAPTOR_RIGHT: -1
-SCORES: aaa`[[[_[NNNNNNTUP[[__`abbcccddddeeeeeeedddcdcccc``bbbbaaaba_`````bbbbba````____\\\\``_aabbbbbbbba````_WVV\\bbbb``\\`^_bXbbb_`_``bbbbbaaabbb___aabbaaa[[UUUbbbZZZZZabbbbbcaa[[UUU[[[[aabbbac____aPPNNNNPP]PPPWWabaaaabbbbbbbaaabbbbbaaabbbXXX__XXXXXXXXXXUYYUUUY[UUUYUUUUYXXMMMMRKMMMMM
+SCORES: BBBA<<<@<//////561<<@@ABCCDDDEEEEFFFFFFFEEEDEDDDDAACCCCBBBCB@AAAAACCCCCBAAAA@@@@====AA@BBCCCCCCCCBAAAA@877==CCCCAA==A?@C9CCC@A@AACCCCCBBBCCC@@@BBCCBBB<<666CCC;;;;;BCCCCCDBB<<666<<<<BBCCCBD@@@@B11////11>11188BCBBBBCCCCCCCBBBCCCCCBBBCCC999@@99999999996::666:<666:6666:99....3,.....
 X_POS: 1426
 Y_POS: 1923
 ---
@@ -16,7 +16,7 @@ CLIP_QUAL_LEFT: 4
 CLIP_QUAL_RIGHT: 69
 CLIP_ADAPTOR_LEFT: -1
 CLIP_ADAPTOR_RIGHT: -1
-SCORES: ```````````UUU\\`[[[]Wa]XXMMMMKKIIIRKMMMMRIIYY[[QQNSQ[[^^\]]][[XXRNNMXYZ\ZZZ[[XWXX[[[\[^JJRW\\WVVVV\\ZUUUUUUOOOMMMMVZSSRSSPPPPYXXXWVVWMMMSKMMMMMMMMMSVVVXXXSUOOOO\\UUUSOOOUUWWURSSUSMMMMMRRMMMUUMLIIRPTRRLLLLOOSRRRWWUUUOOMOOOSTTTTQQQKKIIKKKQKKKKKKMMKKKKKKKKKRUUUUUUVVVVVUTTUUURRPOKKKMMMKHKHHR
+SCORES: AAAAAAAAAAA666==A<<<>8B>99....,,***3,....3**::<<22/42<<??=>>><<993//.9:;=;;;<<9899<<<=<?++38==87777==;666666000....7;443441111:9998778...4,.........4777999460000==66640006688634464.....33...66.-**31533----0043338866600.00045555222,,**,,,2,,,,,,..,,,,,,,,,3666666777776556663310,,,...,),))3
 X_POS: 248
 Y_POS: 3585
 ---
@@ -27,7 +27,7 @@ CLIP_QUAL_LEFT: 4
 CLIP_QUAL_RIGHT: 257
 CLIP_ADAPTOR_LEFT: -1
 CLIP_ADAPTOR_RIGHT: -1
-SCORES: eeeeeeeeeeeeeeeeeeeeeehhhghffgghhhhgghhhhhhhgffhheeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeaaadeeeda]]]ddeeeeeeeeeeeeeeeeeedddedd]]]]dddeeeeeeeeeeeeeeeeedddeeedddddeeeeeeeeeeeeeeeeeeeeeedd\\\ddddeeeeeeeddddddddeeeeeeeeeeeedddddddedddddddddddaaadddddVVRY__]YPPMO
+SCORES: FFFFFFFFFFFFFFFFFFFFFFIIIHIGGHHIIIIHHIIIIIIIHGGIIFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFBBBEFFFEB>>>EEFFFFFFFFFFFFFFFFFFEEEFEE>>>>EEEFFFFFFFFFFFFFFFFFEEEFFFEEEEEFFFFFFFFFFFFFFFFFFFFFFEE===EEEEFFFFFFFEEEEEEEEFFFFFFFFFFFFEEEEEEEFEEEEEEEEEEEBBBEEEEE773:@@>:11.0
 X_POS: 1058
 Y_POS: 1859
 ---
@@ -38,7 +38,7 @@ CLIP_QUAL_LEFT: 4
 CLIP_QUAL_RIGHT: 253
 CLIP_ADAPTOR_LEFT: -1
 CLIP_ADAPTOR_RIGHT: -1
-SCORES: eeeeeeeeeeeeeeeeedddddfhhfffffhfhhhhhhhhhhhhhhhhfeeeeeeddcccceeeeeeeeeeeeecccc```ddeeeedddddddeeddddeedd```eeeeeeeeeeeeeeeeeeeeeeeecccddeeee\\\deeeeeeeeeeeeeeeeeeeeeeeeeccceeeeeeeeeeeeeeeeed\\\ccceeeeeeeeeeeedddeeeeeeeeedddddddeefeddddddddddaaaddddd____^YYY
+SCORES: FFFFFFFFFFFFFFFFFEEEEEGIIGGGGGIGIIIIIIIIIIIIIIIIGFFFFFFEEDDDDFFFFFFFFFFFFFDDDDAAAEEFFFFEEEEEEEFFEEEEFFEEAAAFFFFFFFFFFFFFFFFFFFFFFFFDDDEEFFFF===EFFFFFFFFFFFFFFFFFFFFFFFFFDDDFFFFFFFFFFFFFFFFFE===DDDFFFFFFFFFFFFEEEFFFFFFFFFEEEEEEEFFGFEEEEEEEEEEBBBEEEEE@@@@?:::
 X_POS: 873
 Y_POS: 3104
 ---
@@ -49,7 +49,7 @@ CLIP_QUAL_LEFT: 4
 CLIP_QUAL_RIGHT: 248
 CLIP_ADAPTOR_LEFT: -1
 CLIP_ADAPTOR_RIGHT: -1
-SCORES: eeeeeeeeeeeeeeeeeeeeeehgffaaahheggeddddddddegggfgeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeddddeeeeeeeeeeeeeeeeeedddeeedddddeeeeeeeeeeeeeeeeeeeeeeedd\\\adeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee`_____aaaddaaadddddd[[[[dZZZZ^
+SCORES: FFFFFFFFFFFFFFFFFFFFFFIHGGBBBIIFHHFEEEEEEEEFHHHGHFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFEEEEFFFFFFFFFFFFFFFFFFEEEFFFEEEEEFFFFFFFFFFFFFFFFFFFFFFFEE===BEFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFA@@@@@BBBEEBBBEEEEEE<<<<E;;;;?
 X_POS: 1163
 Y_POS: 1139
 ---
@@ -60,7 +60,7 @@ CLIP_QUAL_LEFT: 4
 CLIP_QUAL_RIGHT: 177
 CLIP_ADAPTOR_LEFT: -1
 CLIP_ADAPTOR_RIGHT: -1
-SCORES: ]]]XRRRR^^[[[^[^^^^^^[PTRWW```^^^WYW^^_^^]\XXVWWYXXWWXX\a\^^[[[\^^^^\]]\\XXXXVVXPPPVUWW]Z\\\^^^^^`^^WUW````^^^``__^^^^`^^[[[_\\\\\\\UPPPPPMVXXZXQUUVVVZZ^\XUUUUUUYZUOOMMMWWUUUMMMMJMMWRRMMMNNNNNNRRWURLLLRPPRTUUULLLLLRMUUURQOSSXTTMOOOWWWWWTTOQQQKKKQKKKKKKKKKKOKKKPKKKKPRROPKKKPRPOO@KKPPLKKK
+SCORES: >>>93333??<<<?<??????<15388AAA???8:8??@??>=99788:998899=B=??<<<=????=>>==99997791117688>;===?????A??868AAAA???AA@@????A??<<<@=======611111.799;9266777;;?=9666666:;600...88666....+..833...//////33863---31135666-----3.66632044955.00088888550222,,,2,,,,,,,,,,0,,,1,,,,13301,,,13100!,,11-,,,
 X_POS: 673
 Y_POS: 1172
 ---
@@ -71,7 +71,7 @@ CLIP_QUAL_LEFT: 4
 CLIP_QUAL_RIGHT: 242
 CLIP_ADAPTOR_LEFT: -1
 CLIP_ADAPTOR_RIGHT: -1
-SCORES: eeeeeeeeeeeeedddeeeeeehhhhhhhhhhhhhhhhhhhhhhhhff__ff__eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeedddeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeaafddddaaadddddddeddddddddd
+SCORES: FFFFFFFFFFFFFEEEFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIGG@@GG@@FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFEEEFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFBBGEEEEBBBEEEEEEEFEEEEEEEEE
 X_POS: 662
 Y_POS: 880
 ---
@@ -82,7 +82,7 @@ CLIP_QUAL_LEFT: 4
 CLIP_QUAL_RIGHT: 261
 CLIP_ADAPTOR_LEFT: -1
 CLIP_ADAPTOR_RIGHT: -1
-SCORES: ```^OOO[ULLLLLLS[[IIIIII[[`````bbbccddcccddddddddbbbbbbbbbbb__^_^[TTT__`bbbb`^_^bbbbbbbbb``YY^^Y`JJJJJZZZ]]XXZ``[TTTZ``]bbb`___ZZZ_]bb````^__b_^_^^`````bbbbbbbbb```b`````bbbb``]]]bb`]YSRRR`````]QQQR]]]`]]]]`b``XXX]`XXXXYYVVMVSZZZXSNNNNKKNNVXXSSSV][VPPPYYYYYYYYYYYY
+SCORES: AAA?000<6------4<<******<<AAAAACCCDDEEDDDEEEEEEEECCCCCCCCCCC@@?@?<555@@ACCCCA?@?CCCCCCCCCAA::??:A+++++;;;>>99;AA<555;AA>CCCA@@@;;;@>CCAAAA?@@C@?@??AAAAACCCCCCCCCAAACAAAAACCCCAA>>>CCA>:4333AAAAA>2223>>>A>>>>ACAA999>A9999::77.74;;;94////,,//7994447><7111::::::::::::
 X_POS: 324
 Y_POS: 1762
 ---
@@ -93,7 +93,7 @@ CLIP_QUAL_LEFT: 4
 CLIP_QUAL_RIGHT: 278
 CLIP_ADAPTOR_LEFT: -1
 CLIP_ADAPTOR_RIGHT: -1
-SCORES: eeeeeeeeeeeeeeeeeeeeeeggfffffhffffffffffefeeeefeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeddddddeeeeeeeeeeeeeeeeedddeeeeeeeeee``\\\``eeddddeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeccccdddeeeeeedccccdeeeee```ceeee````WWceeeeeccccceedddddddddddddda\[[[^]]]adaaad_____________^^^_\\\\^___\\\\\\
+SCORES: FFFFFFFFFFFFFFFFFFFFFFHHGGGGGIGGGGGGGGGGFGFFFFGFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFEEEEEEFFFFFFFFFFFFFFFFFEEEFFFFFFFFFFAA===AAFFEEEEFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFDDDDEEEFFFFFFEDDDDEFFFFFAAADFFFFAAAA88DFFFFFDDDDDFFEEEEEEEEEEEEEEB=<<<?>>>BEBBBE@@@@@@@@@@@@@???@====?@@@======
 X_POS: 173
 Y_POS: 2792
 ---
@@ -104,7 +104,7 @@ CLIP_QUAL_LEFT: 4
 CLIP_QUAL_RIGHT: 260
 CLIP_ADAPTOR_LEFT: -1
 CLIP_ADAPTOR_RIGHT: -1
-SCORES: cccc```ccbbb___bXXXXbbcccegeeddffffffedddecdddccccbbbccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccbbbccccccccbbbbccccccccccccccccccccccccccccccccccccccVVVVVVaccbbbcccccccccccccccccccccccccccccccccccaaaaccccccccccccaWRR\YVVVVVVYYYY
+SCORES: DDDDAAADDCCC@@@C9999CCDDDFHFFEEGGGGGGFEEEFDEEEDDDDCCCDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDCCCDDDDDDDDCCCCDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD777777BDDCCCDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDBBBBDDDDDDDDDDDDB833=:777777::::
 X_POS: 515
 Y_POS: 2361
 ---

diff --git a/bp_test/out/read_sff.out.2 b/bp_test/out/read_sff.out.2
index 7f9a466f92c9773211d9f1bf48e553fee63cf8a6..da5823059fd30ccc46443402cf426c51841a69f7 100644 (file)
--- a/bp_test/out/read_sff.out.2
+++ b/bp_test/out/read_sff.out.2
@@ -5,7 +5,7 @@ CLIP_QUAL_LEFT: 4
 CLIP_QUAL_RIGHT: 277
 CLIP_ADAPTOR_LEFT: -1
 CLIP_ADAPTOR_RIGHT: -1
-SCORES: aaa`[[[_[NNNNNNTUP[[__`abbcccddddeeeeeeedddcdcccc``bbbbaaaba_`````bbbbba````____\\\\``_aabbbbbbbba````_WVV\\bbbb``\\`^_bXbbb_`_``bbbbbaaabbb___aabbaaa[[UUUbbbZZZZZabbbbbcaa[[UUU[[[[aabbbac____aPPNNNNPP]PPPWWabaaaabbbbbbbaaabbbbbaaabbbXXX__XXXXXXXXXXUYYUUUY[UUUYUUUUYXXMMMMRKMMMMM
+SCORES: BBBA<<<@<//////561<<@@ABCCDDDEEEEFFFFFFFEEEDEDDDDAACCCCBBBCB@AAAAACCCCCBAAAA@@@@====AA@BBCCCCCCCCBAAAA@877==CCCCAA==A?@C9CCC@A@AACCCCCBBBCCC@@@BBCCBBB<<666CCC;;;;;BCCCCCDBB<<666<<<<BBCCCBD@@@@B11////11>11188BCBBBBCCCCCCCBBBCCCCCBBBCCC999@@99999999996::666:<666:6666:99....3,.....
 X_POS: 1426
 Y_POS: 1923
 ---

diff --git a/bp_test/out/read_sff.out.3 b/bp_test/out/read_sff.out.3
index b42ba33e674a6e36b2d3c9d48bf6aadd49de2d63..c198cb946c51da1874b9922a15f79f2c642c5cad 100644 (file)
--- a/bp_test/out/read_sff.out.3
+++ b/bp_test/out/read_sff.out.3
@@ -5,7 +5,7 @@ CLIP_QUAL_LEFT: 4
 CLIP_QUAL_RIGHT: 277
 CLIP_ADAPTOR_LEFT: -1
 CLIP_ADAPTOR_RIGHT: -1
-SCORES: aaa`[[[_[NNNNNNTUP[[__`abbcccddddeeeeeeedddcdcccc``bbbbaaaba_`````bbbbba````____\\\\``_aabbbbbbbba````_WVV\\bbbb``\\`^_bXbbb_`_``bbbbbaaabbb___aabbaaa[[UUUbbbZZZZZabbbbbcaa[[UUU[[[[aabbbac____aPPNNNNPP]PPPWWabaaaabbbbbbbaaabbbbbaaabbbXXX__XXXXXXXXXXUYYUUUY[UUUYUUUUYXXMMMMRKMMMMM
+SCORES: BBBA<<<@<//////561<<@@ABCCDDDEEEEFFFFFFFEEEDEDDDDAACCCCBBBCB@AAAAACCCCCBAAAA@@@@====AA@BBCCCCCCCCBAAAA@877==CCCCAA==A?@C9CCC@A@AACCCCCBBBCCC@@@BBCCBBB<<666CCC;;;;;BCCCCCDBB<<666<<<<BBCCCBD@@@@B11////11>11188BCBBBBCCCCCCCBBBCCCCCBBBCCC999@@99999999996::666:<666:6666:99....3,.....
 X_POS: 1426
 Y_POS: 1923
 ---

diff --git a/bp_test/out/read_sff.out.4 b/bp_test/out/read_sff.out.4
index 386e11ddcf6e897f2677ce389f7be59e47d88c92..404eed857a599c2e7a38c3cb404a39f9a82dc6d5 100644 (file)
--- a/bp_test/out/read_sff.out.4
+++ b/bp_test/out/read_sff.out.4
@@ -5,7 +5,7 @@ CLIP_QUAL_LEFT: 4
 CLIP_QUAL_RIGHT: 277
 CLIP_ADAPTOR_LEFT: -1
 CLIP_ADAPTOR_RIGHT: -1
-SCORES: [[[_[NNNNNNTUP[[__`abbcccddddeeeeeeedddcdcccc``bbbbaaaba_`````bbbbba````____\\\\``_aabbbbbbbba````_WVV\\bbbb``\\`^_bXbbb_`_``bbbbbaaabbb___aabbaaa[[UUUbbbZZZZZabbbbbcaa[[UUU[[[[aabbbac____aPPNNNNPP]PPPWWabaaaabbbbbbbaaabbbbbaaabbbXXX__XXXXXXXXXXUYYUUUY[UUUYUUUUYXXMMMMRKMMMM
+SCORES: <<<@<//////561<<@@ABCCDDDEEEEFFFFFFFEEEDEDDDDAACCCCBBBCB@AAAAACCCCCBAAAA@@@@====AA@BBCCCCCCCCBAAAA@877==CCCCAA==A?@C9CCC@A@AACCCCCBBBCCC@@@BBCCBBB<<666CCC;;;;;BCCCCCDBB<<666<<<<BBCCCBD@@@@B11////11>11188BCBBBBCCCCCCCBBBCCCCCBBBCCC999@@99999999996::666:<666:6666:99....3,....
 X_POS: 1426
 Y_POS: 1923
 ---