| 2012-04-11 |
Sarah Westcott | fixed bug with windows version of trim.seqs when run... |
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| 2012-04-05 |
Sarah Westcott | added subsample, tiers and processors to tree.shared... |
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| 2012-04-02 |
Sarah Westcott | added create.database command. fixed help in get.shared... |
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| 2012-03-28 |
Sarah Westcott | minor changes to pcr.seqs. Added filterToPos and filte... |
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| 2012-03-27 |
Sarah Westcott | added pcr.seqs command. fixed bug in rarefacftion.singl... |
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| 2012-03-02 |
Sarah Westcott | added cooccurence command |
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| 2012-02-20 |
Sarah Westcott | removed unused copy constructors and comments within... |
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| 2012-02-06 |
Sarah Westcott | Merge remote-tracking branch 'mothur/master' |
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| 2012-02-06 |
Sarah Westcott | added sort.seqs command. puts sequences from a fasta... |
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| 2012-01-25 |
westcott | added otu.association command. added calcSpearman,... |
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| 2011-11-29 |
westcott | Added summary.qual command. Added fontsize parameter... |
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| 2011-11-28 |
westcott | added fontsize to heatmap.sim, paralellized chimera... |
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| 2011-11-11 |
westcott | fixed bug with trim.flows that was adding flow files... |
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| 2011-11-07 |
westcott | working on chimera.perseus. made removeConfidences... |
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| 2011-10-07 |
westcott | testing 1.22.0 |
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| 2011-09-23 |
westcott | added summary.tax command and fixed bug with root level... |
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| 2011-09-14 |
westcott | adds group parameter to chimera.uchime so you can check... |
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| 2011-08-09 |
westcott | added count.groups command and paralellized align.seqs... |
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| 2011-07-06 |
westcott | added save parameter to align.seqs, chimera commands... |
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| 2011-06-01 |
westcott | added count.seqs command and made some modifcations... |
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| 2011-05-27 |
westcott | added deunique.tree command |
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| 2011-05-16 |
westcott | added chimera.uchime |
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| 2011-04-25 |
westcott | fixed ties issue in maligner getBlastSeqs |
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| 2011-04-06 |
westcott | added getCommandInfoCommand for gui |
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| 2011-04-06 |
westcott | removed read.dist, read.otu, read.tree and globaldata... |
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| 2011-03-16 |
westcott | added set.current and get.current commands and modified... |
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| 2011-02-15 |
westcott | working on anosim command |
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| 2011-02-14 |
westcott | added make.fastq command |
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| 2011-02-09 |
westcott | added mantel command |
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| 2011-02-08 |
westcott | added homova command |
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| 2011-02-08 |
westcott | added amova command |
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| 2011-01-24 |
westcott | added merge.groups command |
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| 2011-01-21 |
westcott | added calcs to tree.shared. working on remove.rare... |
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| 2011-01-14 |
westcott | fixed trim.seqs bug with qtrim parameter and added... |
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| 2011-01-10 |
westcott | pca command |
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| 2011-01-05 |
westcott | added pearson coefficient metric to pcoa |
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| 2011-01-04 |
westcott | removed parse.sff command and made its functionality... |
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| 2010-12-31 |
pschloss | added shhh.seqs command |
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| 2010-12-23 |
pschloss | addition of trim.flows |
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| 2010-12-23 |
westcott | fixed memory leak in decalc findClosest function used... |
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| 2010-11-29 |
westcott | added consensus.seqs command |
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| 2010-11-19 |
westcott | added indicator command |
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| 2010-11-12 |
westcott | added get.otus and remove.otus commands |
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| 2010-11-10 |
westcott | added get.groups and remove.groups commands |
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| 2010-11-05 |
westcott | fixed metastats, added resize to cluster.classic, added... |
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| 2010-10-29 |
westcott | added cluster.classic command |
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| 2010-10-20 |
westcott | added pairwise.seqs |
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| 2010-10-19 |
westcott | fixed bug with aligner and longest base. added deunique... |
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| 2010-10-15 |
westcott | added pipeline commands which involved change to comman... |
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| 2010-10-04 |
westcott | changed name of parse.fastaq command to fastq.info |
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| 2010-09-30 |
westcott | added parse.fastaq command, added permute option to... |
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| 2010-09-24 |
westcott | added get.lineage and remove.lineage commands |
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| 2010-09-23 |
westcott | added cluster.fragments command as well as the nseqs... |
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| 2010-09-21 |
westcott | added split.groups command |
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| 2010-09-17 |
westcott | working on megastats |
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| 2010-09-15 |
westcott | added normalize.shared command |
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| 2010-07-19 |
pschloss | pat's updates on 7/19/10 |
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| 2010-07-14 |
westcott | started work on sffinfo command. fixed bug across... |
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| 2010-07-06 |
pschloss | sens.spec changes |
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| 2010-06-22 |
westcott | finished get.relabund command |
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| 2010-06-22 |
westcott | added mpi code to cluster.split command |
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| 2010-06-21 |
westcott | added degap.seqs command |
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| 2010-06-02 |
westcott | added classify.otu command |
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| 2010-05-27 |
westcott | fixed project |
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| 2010-05-27 |
westcott | changes to chop.seqs |
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| 2010-05-20 |
westcott | added cluster.split command |
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| 2010-05-18 |
westcott | added split.abund comand |
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| 2010-05-12 |
westcott | modified freq parameter be a percentage of numSeqs... |
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| 2010-05-11 |
westcott | added clearcut command |
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| 2010-05-10 |
westcott | added chop.seqs command |
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| 2010-05-10 |
westcott | added make.group command |
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| 2010-05-04 |
westcott | added phylo.diversity command. added hard parameter... |
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| 2010-04-29 |
westcott | paralellized summary.seqs and added mpi code to it. |
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| 2010-04-29 |
westcott | paralellized screen.seqs and added mpi code to it.... |
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| 2010-04-28 |
westcott | added set.logfile command |
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| 2010-04-07 |
westcott | added MPI code, broke up chimera.seqs into 5 separated... |
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| 2010-03-12 |
westcott | added MPI to dist.seqs command |
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| 2010-03-11 |
westcott | testing mpi |
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| 2010-02-26 |
westcott | created mothurOut class to handle logfiles |
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| 2010-02-25 |
westcott | added parse.list command |
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| 2010-02-12 |
westcott | working on chimeras |
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| 2010-01-28 |
westcott | fixed some bugs found while testing 1.8 |
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| 2010-01-27 |
westcott | fixed some bugs found while testing 1.8 |
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| 2010-01-26 |
westcott | added set.dir command and modified commands to redirect... |
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| 2010-01-19 |
westcott | added out.hierarchy command |
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| 2010-01-04 |
westcott | added pca command |
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| 2009-12-23 |
westcott | precluster command finished |
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| 2009-12-21 |
westcott | fixed some bugs and added mgcluster command |
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| 2009-12-09 |
westcott | added sorted parameter to get.oturep, added error check... |
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| 2009-12-02 |
westcott | modified sequence class to read fasta files with commen... |
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| 2009-11-24 |
westcott | changed get.sharedotu to get.sharedseqs |
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| 2009-11-24 |
westcott | changed get.sharedotu to get.sharedseqs |
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| 2009-11-23 |
westcott | added phylotype command which reads a taxonomy file... |
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| 2009-11-05 |
westcott | started work on classify.seqs command. changed the... |
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| 2009-10-29 |
westcott | added hcluster command and fixed some bugs, namely... |
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| 2009-10-12 |
westcott | finished chimeraslayer method and added get.listcount... |
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| 2009-09-23 |
westcott | added get.sharedotu command |
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| 2009-09-21 |
westcott | align.check command added |
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| 2009-07-08 |
westcott | added system command |
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| 2009-07-08 |
westcott | added remove.seqs command |
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