git.donarmstrong.com Git - mothur.git/commit

]> git.donarmstrong.com Git - mothur.git/commit

author	westcott <westcott>
	Wed, 7 Apr 2010 12:55:09 +0000 (12:55 +0000)
committer	westcott <westcott>
	Wed, 7 Apr 2010 12:55:09 +0000 (12:55 +0000)
commit	fdc1f6eaf544f695fc1511f24bddd7e6069c33ba
tree	7278061046b67236f17e6c154ff3c10b1d1b19b0	tree \| snapshot
parent	aba5f8811829037b0a3004ef33f0ad4ed5e5fcf8	commit \| diff

added MPI code, broke up chimera.seqs into 5 separated commands, added parse.sff, paralellized filter.seqs and bellerophon.

62 files changed:

Mothur.xcodeproj/project.pbxproj		diff \| blob \| history
aligncommand.cpp		diff \| blob \| history
aligncommand.h		diff \| blob \| history
alignmentdb.cpp		diff \| blob \| history
alignmentdb.h		diff \| blob \| history
bellerophon.cpp		diff \| blob \| history
bellerophon.h		diff \| blob \| history
blastdb.cpp		diff \| blob \| history
blastdb.hpp		diff \| blob \| history
ccode.cpp		diff \| blob \| history
ccode.h		diff \| blob \| history
chimera.cpp		diff \| blob \| history
chimera.h		diff \| blob \| history
chimerabellerophoncommand.cpp	[new file with mode: 0644]	blob
chimerabellerophoncommand.h	[new file with mode: 0644]	blob
chimeraccodecommand.cpp	[new file with mode: 0644]	blob
chimeraccodecommand.h	[new file with mode: 0644]	blob
chimeracheckcommand.cpp	[new file with mode: 0644]	blob
chimeracheckcommand.h	[new file with mode: 0644]	blob
chimeracheckrdp.cpp		diff \| blob \| history
chimeracheckrdp.h		diff \| blob \| history
chimerapintailcommand.cpp	[new file with mode: 0644]	blob
chimerapintailcommand.h	[new file with mode: 0644]	blob
chimeraseqscommand.cpp		diff \| blob \| history
chimeraseqscommand.h		diff \| blob \| history
chimeraslayer.cpp		diff \| blob \| history
chimeraslayer.h		diff \| blob \| history
chimeraslayercommand.cpp	[new file with mode: 0644]	blob
chimeraslayercommand.h	[new file with mode: 0644]	blob
classify.cpp		diff \| blob \| history
classifyseqscommand.cpp		diff \| blob \| history
classifyseqscommand.h		diff \| blob \| history
cluster.cpp		diff \| blob \| history
clustercommand.cpp		diff \| blob \| history
commandfactory.cpp		diff \| blob \| history
database.hpp		diff \| blob \| history
distancecommand.cpp		diff \| blob \| history
distancecommand.h		diff \| blob \| history
distancedb.hpp		diff \| blob \| history
filterseqscommand.cpp		diff \| blob \| history
filterseqscommand.h		diff \| blob \| history
fullmatrix.cpp		diff \| blob \| history
globaldata.hpp		diff \| blob \| history
kmerdb.cpp		diff \| blob \| history
kmerdb.hpp		diff \| blob \| history
mothur.h		diff \| blob \| history
nastreport.cpp		diff \| blob \| history
nastreport.hpp		diff \| blob \| history
parsesffcommand.cpp	[new file with mode: 0644]	blob
parsesffcommand.h	[new file with mode: 0644]	blob
pintail.cpp		diff \| blob \| history
pintail.h		diff \| blob \| history
readcolumn.cpp		diff \| blob \| history
readdistcommand.cpp		diff \| blob \| history
readdistcommand.h		diff \| blob \| history
readmatrix.hpp		diff \| blob \| history
readphylip.cpp		diff \| blob \| history
sequence.cpp		diff \| blob \| history
sequence.hpp		diff \| blob \| history
suffixdb.cpp		diff \| blob \| history
suffixdb.hpp		diff \| blob \| history
validparameter.cpp		diff \| blob \| history

Mothur--16S microbiota sequencing software; mirror of main repository with my branches

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