git.donarmstrong.com Git - mothur.git/commit

]> git.donarmstrong.com Git - mothur.git/commit

author	westcott <westcott>
	Thu, 5 Nov 2009 14:40:15 +0000 (14:40 +0000)
committer	westcott <westcott>
	Thu, 5 Nov 2009 14:40:15 +0000 (14:40 +0000)
commit	63e089e0b3aad1741bab60119ed7ccc784dce347
tree	c1679b1da213fc1a066de7615a8705c91cf6f16d	tree \| snapshot
parent	f5023c911c377e5320c5110c78af98dd8841ef58	commit \| diff

started work on classify.seqs command. changed the database class so that it does not store the template sequences. created alignmentDB class that stores template seqs and uses database class for searching. made changes to aligncommand and chimeracheckrdp to reflect the changes to database class.

34 files changed:

Mothur.xcodeproj/project.pbxproj		diff \| blob \| history
aligncommand.cpp		diff \| blob \| history
aligncommand.h		diff \| blob \| history
alignmentdb.cpp	[new file with mode: 0644]	blob
alignmentdb.h	[new file with mode: 0644]	blob
bayesian.cpp	[new file with mode: 0644]	blob
bayesian.h	[new file with mode: 0644]	blob
blastdb.cpp		diff \| blob \| history
blastdb.hpp		diff \| blob \| history
chimeracheckrdp.cpp		diff \| blob \| history
chimeracheckrdp.h		diff \| blob \| history
classify.cpp	[new file with mode: 0644]	blob
classify.h	[new file with mode: 0644]	blob
classifyseqscommand.cpp	[new file with mode: 0644]	blob
classifyseqscommand.h	[new file with mode: 0644]	blob
commandfactory.cpp		diff \| blob \| history
database.cpp		diff \| blob \| history
database.hpp		diff \| blob \| history
distancedb.cpp		diff \| blob \| history
distancedb.hpp		diff \| blob \| history
doTaxonomy.cpp	[new file with mode: 0644]	blob
doTaxonomy.h	[new file with mode: 0644]	blob
hcluster.cpp		diff \| blob \| history
kmerdb.cpp		diff \| blob \| history
kmerdb.hpp		diff \| blob \| history
knn.cpp	[new file with mode: 0644]	blob
knn.h	[new file with mode: 0644]	blob
nast.cpp		diff \| blob \| history
phylotype.cpp	[new file with mode: 0644]	blob
phylotype.h	[new file with mode: 0644]	blob
suffixdb.cpp		diff \| blob \| history
suffixdb.hpp		diff \| blob \| history
suffixtree.cpp		diff \| blob \| history
suffixtree.hpp		diff \| blob \| history

Mothur--16S microbiota sequencing software; mirror of main repository with my branches

RSS Atom