| 2010-12-17 |
westcott | fixed bug with trim.seqs- when a file is blank for... |
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| 2010-11-29 |
westcott | added consensus.seqs command |
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| 2010-11-19 |
westcott | added indicator command |
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| 2010-11-12 |
westcott | added get.otus and remove.otus commands |
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| 2010-11-10 |
westcott | added get.groups and remove.groups commands |
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| 2010-11-08 |
westcott | cluster.split fix |
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| 2010-11-05 |
westcott | fixed metastats, added resize to cluster.classic, added... |
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| 2010-11-05 |
westcott | cluster.split fix |
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| 2010-10-29 |
westcott | added cluster.classic command |
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| 2010-10-27 |
westcott | fixing helps |
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| 2010-10-26 |
westcott | done testing 1.14.0 |
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| 2010-10-25 |
westcott | added remove file option to pipeline command in user... |
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| 2010-10-20 |
westcott | added pairwise.seqs |
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| 2010-10-19 |
westcott | fixed bug with aligner and longest base. added deunique... |
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| 2010-10-15 |
westcott | added pipeline commands which involved change to comman... |
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| 2010-09-30 |
westcott | added parse.fastaq command, added permute option to... |
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| 2010-09-24 |
westcott | added get.lineage and remove.lineage commands |
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| 2010-09-23 |
westcott | added cluster.fragments command as well as the nseqs... |
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| 2010-09-21 |
westcott | added mothur executable to cvs |
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| 2010-09-21 |
westcott | added split.groups command |
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| 2010-09-17 |
westcott | bug fixes |
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| 2010-09-17 |
westcott | working on megastats |
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| 2010-09-16 |
westcott | initial add of metastats |
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| 2010-09-15 |
westcott | added normalize.shared command |
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| 2010-08-26 |
westcott | added clearcut source to mothur, fixed mislabeled share... |
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| 2010-08-26 |
westcott | added clearcut source to mothur, fixed mislabeled share... |
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| 2010-08-23 |
westcott | filter.seqs bug change |
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| 2010-08-23 |
westcott | numSeqs passing fix |
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| 2010-08-23 |
pschloss | added a few evenness calculators and fixed a couple... |
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| 2010-08-20 |
westcott | modified precluster to use less memory. |
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| 2010-08-19 |
westcott | modified calculators to use doubles, added numotu and... |
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| 2010-07-22 |
westcott | fixes while testing 1.12.0 |
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| 2010-07-19 |
westcott | added ordergroup parameter to read.otu |
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| 2010-07-19 |
pschloss | pat's updates on 7/19/10 |
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| 2010-07-14 |
pschloss | pat's changes to trim.seqs |
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| 2010-07-14 |
westcott | started work on sffinfo command. fixed bug across... |
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| 2010-07-06 |
pschloss | sens.spec changes |
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| 2010-06-22 |
westcott | added mpi code to cluster.split command |
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| 2010-06-21 |
westcott | added degap.seqs command |
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| 2010-06-21 |
westcott | modified chimera commands to process multiple fasta... |
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| 2010-06-14 |
westcott | fixed pintail bug |
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| 2010-06-09 |
pschloss | added weightedlinkage.cpp |
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| 2010-06-02 |
westcott | added sort parameter to get.otulist |
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| 2010-06-02 |
westcott | added classify.otu command |
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| 2010-05-27 |
westcott | fixed project |
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| 2010-05-26 |
pschloss | fixed bugs with trim.seqs and bdiffs |
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| 2010-05-20 |
westcott | added cluster.split command |
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| 2010-05-18 |
westcott | added split.abund comand |
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| 2010-05-12 |
westcott | modified freq parameter be a percentage of numSeqs... |
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| 2010-05-11 |
westcott | added clearcut command |
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| 2010-05-10 |
westcott | added chop.seqs command |
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| 2010-05-10 |
westcott | added make.group command |
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| 2010-05-07 |
westcott | modified trim.seqs to account for primers of different... |
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| 2010-05-04 |
westcott | added phylo.diversity command. added hard parameter... |
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| 2010-04-30 |
westcott | paralellized trim.seqs |
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| 2010-04-28 |
westcott | added set.logfile command |
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| 2010-04-27 |
westcott | reworked the classifiers summary file added groupfile... |
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| 2010-04-26 |
westcott | made classifier faster |
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| 2010-04-14 |
pschloss | pat's minor edits to distance calculations |
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| 2010-04-14 |
westcott | some changes while testing 1.9 |
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| 2010-04-07 |
westcott | added MPI code, broke up chimera.seqs into 5 separated... |
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| 2010-03-12 |
westcott | added MPI to dist.seqs command |
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| 2010-03-04 |
westcott | mothur with external build |
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| 2010-03-04 |
westcott | changes to filter.seqs |
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| 2010-02-26 |
westcott | created mothurOut class to handle logfiles |
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| 2010-02-25 |
westcott | added parse.list command |
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| 2010-02-12 |
westcott | working on chimeras |
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| 2010-02-02 |
westcott | fixed bugs for 1.8 |
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| 2010-01-27 |
westcott | added distance search method to classify.seqs |
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| 2010-01-26 |
westcott | added set.dir command and modified commands to redirect... |
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| 2010-01-19 |
westcott | added out.hierarchy command |
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| 2010-01-19 |
pschloss | pat's mods to morisitahorn and pre.cluster |
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| 2010-01-14 |
westcott | added formatmatrix, formatcolumn, and formatphylip... |
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| 2010-01-04 |
westcott | added pca command |
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| 2009-12-23 |
westcott | precluster command finished |
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| 2009-12-21 |
westcott | fixed some bugs and added mgcluster command |
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| 2009-12-09 |
westcott | added sorted parameter to get.oturep, added error check... |
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| 2009-12-08 |
westcott | added list parameter to get.seqs and remove.seqs and... |
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| 2009-11-25 |
pschloss | version for 10.5 |
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| 2009-11-24 |
pschloss | fixed splash page citation |
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| 2009-11-23 |
westcott | added phylotype command which reads a taxonomy file... |
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| 2009-11-17 |
westcott | final fixes for 1.7 |
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| 2009-11-13 |
westcott | finished work on classify.seqs bayesian method and... |
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| 2009-11-05 |
westcott | started work on classify.seqs command. changed the... |
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| 2009-10-29 |
westcott | added hcluster command and fixed some bugs, namely... |
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| 2009-10-12 |
westcott | finished chimeraslayer method and added get.listcount... |
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| 2009-09-28 |
westcott | started adding chimeraslayer method and fixed minor... |
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| 2009-09-23 |
westcott | added get.sharedotu command |
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| 2009-09-18 |
westcott | adding more error checking for list and group files... |
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| 2009-09-15 |
westcott | fixed some issues while testing 1.6 |
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| 2009-09-09 |
westcott | continued work on chimeras and fixed bug in trim.seqs... |
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| 2009-09-01 |
westcott | changed raredisplay to use vectors instead of files |
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| 2009-09-01 |
westcott | added more descriptive error messages to sharedlist |
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| 2009-08-31 |
westcott | checking in chimera files in progress after move to... |
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| 2009-08-12 |
westcott | removing mallard |
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| 2009-08-11 |
westcott | chimera.seqs pintail is working. |
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| 2009-08-10 |
pschloss | mothur-v.1.5.0 |
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| 2009-07-30 |
pschloss | pat's edits prior to v.1.5 |
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| 2009-07-26 |
westcott | fixed bug with aligner in database class, worked on... |
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| 2009-07-22 |
westcott | worked on chimeras |
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