// !$*UTF8*$! { archiveVersion = 1; classes = { }; objectVersion = 44; objects = { /* Begin PBXFileReference section */ A703FE931194645F002C397E /* makegroupcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = makegroupcommand.h; sourceTree = SOURCE_ROOT; }; A703FE941194645F002C397E /* makegroupcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = makegroupcommand.cpp; sourceTree = SOURCE_ROOT; }; A71D924211AEB42400D00CBC /* clustersplitcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = clustersplitcommand.cpp; sourceTree = ""; }; A71D924311AEB42400D00CBC /* clustersplitcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = clustersplitcommand.h; sourceTree = ""; }; A71D924411AEB42400D00CBC /* splitabundcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = splitabundcommand.cpp; sourceTree = ""; }; A71D924511AEB42400D00CBC /* splitabundcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = splitabundcommand.h; sourceTree = ""; }; A71D924611AEB42400D00CBC /* splitmatrix.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = splitmatrix.cpp; sourceTree = ""; }; A71D924711AEB42400D00CBC /* splitmatrix.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = splitmatrix.h; sourceTree = ""; }; A72B3A62118B37FD004B9F8D /* phylodiversitycommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = phylodiversitycommand.h; sourceTree = ""; }; A72B3A63118B37FD004B9F8D /* phylodiversitycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = phylodiversitycommand.cpp; sourceTree = ""; }; A72B3A7B118B4D1B004B9F8D /* phylodiversity.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = phylodiversity.h; sourceTree = ""; }; A72B3A7C118B4D1B004B9F8D /* phylodiversity.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = phylodiversity.cpp; sourceTree = ""; }; A73953DA11987ED100B0B160 /* chopseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chopseqscommand.h; sourceTree = ""; }; A73953DB11987ED100B0B160 /* chopseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = chopseqscommand.cpp; sourceTree = ""; }; A747E79B1163442A00FB9042 /* chimeracheckcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chimeracheckcommand.h; sourceTree = ""; }; A747E79C1163442A00FB9042 /* chimeracheckcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = chimeracheckcommand.cpp; sourceTree = ""; }; A747E81C116365E000FB9042 /* chimeraslayercommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chimeraslayercommand.h; sourceTree = ""; }; A747E81D116365E000FB9042 /* chimeraslayercommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = chimeraslayercommand.cpp; sourceTree = ""; }; A7639F8D1175DF35008F5578 /* makefile */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.make; path = makefile; sourceTree = ""; }; A76AAD02117F322B003D8DA1 /* phylosummary.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = phylosummary.h; sourceTree = ""; }; A76AAD03117F322B003D8DA1 /* phylosummary.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = phylosummary.cpp; sourceTree = ""; }; A76C4A1011876BAF0009460B /* setlogfilecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = setlogfilecommand.h; sourceTree = SOURCE_ROOT; }; A76C4A1111876BAF0009460B /* setlogfilecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = setlogfilecommand.cpp; sourceTree = SOURCE_ROOT; }; A78254461164D7790002E2DD /* chimerapintailcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chimerapintailcommand.h; sourceTree = ""; }; A78254471164D7790002E2DD /* chimerapintailcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = chimerapintailcommand.cpp; sourceTree = ""; }; A7825502116519F70002E2DD /* chimerabellerophoncommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chimerabellerophoncommand.h; sourceTree = ""; }; A7825503116519F70002E2DD /* chimerabellerophoncommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = chimerabellerophoncommand.cpp; sourceTree = ""; }; A78434881162224F00100BE0 /* chimeraccodecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chimeraccodecommand.h; sourceTree = ""; }; A78434891162224F00100BE0 /* chimeraccodecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = chimeraccodecommand.cpp; sourceTree = ""; }; A7BBDA7B11B5694E006E6551 /* classifyotucommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = classifyotucommand.h; sourceTree = ""; }; A7BBDA7C11B5694E006E6551 /* classifyotucommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = classifyotucommand.cpp; sourceTree = ""; }; A7D215C811996C6E00F13F13 /* clearcutcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = clearcutcommand.h; sourceTree = ""; }; A7D215C911996C6E00F13F13 /* clearcutcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = clearcutcommand.cpp; sourceTree = ""; }; A7D216061199C47F00F13F13 /* catchallcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = catchallcommand.h; sourceTree = ""; }; A7D216071199C47F00F13F13 /* catchallcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = catchallcommand.cpp; sourceTree = ""; }; A7DA1FEC113FECD400BF472F /* ace.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = ace.cpp; sourceTree = ""; }; A7DA1FED113FECD400BF472F /* ace.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = ace.h; sourceTree = ""; }; A7DA1FEE113FECD400BF472F /* aligncommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = aligncommand.cpp; sourceTree = ""; }; A7DA1FEF113FECD400BF472F /* aligncommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = aligncommand.h; sourceTree = ""; }; A7DA1FF0113FECD400BF472F /* alignment.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = alignment.cpp; sourceTree = ""; }; A7DA1FF1113FECD400BF472F /* alignment.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = alignment.hpp; sourceTree = ""; }; A7DA1FF2113FECD400BF472F /* alignmentcell.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = alignmentcell.cpp; sourceTree = ""; }; A7DA1FF3113FECD400BF472F /* alignmentcell.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = alignmentcell.hpp; sourceTree = ""; }; A7DA1FF4113FECD400BF472F /* alignmentdb.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = alignmentdb.cpp; sourceTree = ""; }; A7DA1FF5113FECD400BF472F /* alignmentdb.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = alignmentdb.h; sourceTree = ""; }; A7DA1FF6113FECD400BF472F /* averagelinkage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = averagelinkage.cpp; sourceTree = ""; }; A7DA1FF7113FECD400BF472F /* bayesian.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = bayesian.cpp; sourceTree = ""; }; A7DA1FF8113FECD400BF472F /* bayesian.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = bayesian.h; sourceTree = ""; }; A7DA1FF9113FECD400BF472F /* bellerophon.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = bellerophon.cpp; sourceTree = ""; }; A7DA1FFA113FECD400BF472F /* bellerophon.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = bellerophon.h; sourceTree = ""; }; A7DA1FFB113FECD400BF472F /* bergerparker.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = bergerparker.cpp; sourceTree = ""; }; A7DA1FFC113FECD400BF472F /* bergerparker.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = bergerparker.h; sourceTree = ""; }; A7DA1FFD113FECD400BF472F /* binsequencecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = binsequencecommand.cpp; sourceTree = ""; }; A7DA1FFE113FECD400BF472F /* binsequencecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = binsequencecommand.h; sourceTree = ""; }; A7DA1FFF113FECD400BF472F /* blastalign.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = blastalign.cpp; sourceTree = ""; }; A7DA2000113FECD400BF472F /* blastalign.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = blastalign.hpp; sourceTree = ""; }; A7DA2001113FECD400BF472F /* blastdb.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = blastdb.cpp; sourceTree = ""; }; A7DA2002113FECD400BF472F /* blastdb.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = blastdb.hpp; sourceTree = ""; }; A7DA2003113FECD400BF472F /* boneh.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = boneh.cpp; sourceTree = ""; }; A7DA2004113FECD400BF472F /* boneh.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = boneh.h; sourceTree = ""; }; A7DA2005113FECD400BF472F /* bootstrap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = bootstrap.cpp; sourceTree = ""; }; A7DA2006113FECD400BF472F /* bootstrap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = bootstrap.h; sourceTree = ""; }; A7DA2007113FECD400BF472F /* bootstrapsharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = bootstrapsharedcommand.cpp; sourceTree = ""; }; A7DA2008113FECD400BF472F /* bootstrapsharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = bootstrapsharedcommand.h; sourceTree = ""; }; A7DA2009113FECD400BF472F /* bstick.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = bstick.cpp; sourceTree = ""; }; A7DA200A113FECD400BF472F /* bstick.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = bstick.h; sourceTree = ""; }; A7DA200B113FECD400BF472F /* calculator.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = calculator.cpp; sourceTree = ""; }; A7DA200C113FECD400BF472F /* calculator.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = calculator.h; sourceTree = ""; }; A7DA200D113FECD400BF472F /* ccode.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = ccode.cpp; sourceTree = ""; }; A7DA200E113FECD400BF472F /* ccode.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = ccode.h; sourceTree = ""; }; A7DA200F113FECD400BF472F /* chao1.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = chao1.cpp; sourceTree = ""; }; A7DA2010113FECD400BF472F /* chao1.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chao1.h; sourceTree = ""; }; A7DA2011113FECD400BF472F /* chimera.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = chimera.cpp; sourceTree = ""; }; A7DA2012113FECD400BF472F /* chimera.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chimera.h; sourceTree = ""; }; A7DA2013113FECD400BF472F /* chimeracheckrdp.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = chimeracheckrdp.cpp; sourceTree = ""; }; A7DA2014113FECD400BF472F /* chimeracheckrdp.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chimeracheckrdp.h; sourceTree = ""; }; A7DA2015113FECD400BF472F /* chimerarealigner.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = chimerarealigner.cpp; sourceTree = ""; }; A7DA2016113FECD400BF472F /* chimerarealigner.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chimerarealigner.h; sourceTree = ""; }; A7DA2017113FECD400BF472F /* chimeraseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = chimeraseqscommand.cpp; sourceTree = ""; }; A7DA2018113FECD400BF472F /* chimeraseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chimeraseqscommand.h; sourceTree = ""; }; A7DA2019113FECD400BF472F /* chimeraslayer.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = chimeraslayer.cpp; sourceTree = ""; }; A7DA201A113FECD400BF472F /* chimeraslayer.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chimeraslayer.h; sourceTree = ""; }; A7DA201B113FECD400BF472F /* classify.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = classify.cpp; sourceTree = ""; }; A7DA201C113FECD400BF472F /* classify.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = classify.h; sourceTree = ""; }; A7DA201D113FECD400BF472F /* classifyseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = classifyseqscommand.cpp; sourceTree = ""; }; A7DA201E113FECD400BF472F /* classifyseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = classifyseqscommand.h; sourceTree = ""; }; A7DA201F113FECD400BF472F /* cluster.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = cluster.cpp; sourceTree = ""; }; A7DA2020113FECD400BF472F /* cluster.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = cluster.hpp; sourceTree = ""; }; A7DA2021113FECD400BF472F /* clustercommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = clustercommand.cpp; sourceTree = ""; }; A7DA2022113FECD400BF472F /* clustercommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = clustercommand.h; sourceTree = ""; }; A7DA2023113FECD400BF472F /* collect.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = collect.cpp; sourceTree = ""; }; A7DA2024113FECD400BF472F /* collect.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = collect.h; sourceTree = ""; }; A7DA2025113FECD400BF472F /* collectcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = collectcommand.cpp; sourceTree = ""; }; A7DA2026113FECD400BF472F /* collectcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = collectcommand.h; sourceTree = ""; }; A7DA2027113FECD400BF472F /* collectdisplay.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = collectdisplay.h; sourceTree = ""; }; A7DA2028113FECD400BF472F /* collectorscurvedata.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = collectorscurvedata.h; sourceTree = ""; }; A7DA2029113FECD400BF472F /* collectsharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = collectsharedcommand.cpp; sourceTree = ""; }; A7DA202A113FECD400BF472F /* collectsharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = collectsharedcommand.h; sourceTree = ""; }; A7DA202B113FECD400BF472F /* command.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = command.hpp; sourceTree = ""; }; A7DA202C113FECD400BF472F /* commandfactory.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = commandfactory.cpp; sourceTree = ""; }; A7DA202D113FECD400BF472F /* commandfactory.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = commandfactory.hpp; sourceTree = ""; }; A7DA202E113FECD400BF472F /* commandoptionparser.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = commandoptionparser.cpp; sourceTree = ""; }; A7DA202F113FECD400BF472F /* commandoptionparser.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = commandoptionparser.hpp; sourceTree = ""; }; A7DA2030113FECD400BF472F /* completelinkage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = completelinkage.cpp; sourceTree = ""; }; A7DA2031113FECD400BF472F /* consensuscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = consensuscommand.cpp; sourceTree = ""; }; A7DA2032113FECD400BF472F /* consensuscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = consensuscommand.h; sourceTree = ""; }; A7DA2033113FECD400BF472F /* coverage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = coverage.cpp; sourceTree = ""; }; A7DA2034113FECD400BF472F /* coverage.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = coverage.h; sourceTree = ""; }; A7DA2035113FECD400BF472F /* database.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = database.cpp; sourceTree = ""; }; A7DA2036113FECD400BF472F /* database.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = database.hpp; sourceTree = ""; }; A7DA2037113FECD400BF472F /* datavector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = datavector.hpp; sourceTree = ""; }; A7DA2038113FECD400BF472F /* decalc.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = decalc.cpp; sourceTree = ""; }; A7DA2039113FECD400BF472F /* decalc.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = decalc.h; sourceTree = ""; }; A7DA203A113FECD400BF472F /* deconvolutecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = deconvolutecommand.cpp; sourceTree = ""; }; A7DA203B113FECD400BF472F /* deconvolutecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = deconvolutecommand.h; sourceTree = ""; }; A7DA203C113FECD400BF472F /* display.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = display.h; sourceTree = ""; }; A7DA203D113FECD400BF472F /* dist.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = dist.h; sourceTree = ""; }; A7DA203E113FECD400BF472F /* distancecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = distancecommand.cpp; sourceTree = ""; }; A7DA203F113FECD400BF472F /* distancecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = distancecommand.h; sourceTree = ""; }; A7DA2040113FECD400BF472F /* distancedb.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = distancedb.cpp; sourceTree = ""; }; A7DA2041113FECD400BF472F /* distancedb.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = distancedb.hpp; sourceTree = ""; }; A7DA2042113FECD400BF472F /* dlibshuff.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = dlibshuff.cpp; sourceTree = ""; }; A7DA2043113FECD400BF472F /* dlibshuff.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = dlibshuff.h; sourceTree = ""; }; A7DA2044113FECD400BF472F /* eachgapdist.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = eachgapdist.h; sourceTree = ""; }; A7DA2045113FECD400BF472F /* eachgapignore.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = eachgapignore.h; sourceTree = ""; }; A7DA2046113FECD400BF472F /* efron.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = efron.cpp; sourceTree = ""; }; A7DA2047113FECD400BF472F /* efron.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = efron.h; sourceTree = ""; }; A7DA2048113FECD400BF472F /* engine.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = engine.cpp; sourceTree = ""; }; A7DA2049113FECD400BF472F /* engine.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = engine.hpp; sourceTree = ""; }; A7DA204A113FECD400BF472F /* fastamap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = fastamap.cpp; sourceTree = ""; }; A7DA204B113FECD400BF472F /* fastamap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = fastamap.h; sourceTree = ""; }; A7DA204C113FECD400BF472F /* fileoutput.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = fileoutput.cpp; sourceTree = ""; }; A7DA204D113FECD400BF472F /* fileoutput.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = fileoutput.h; sourceTree = ""; }; A7DA204E113FECD400BF472F /* filters.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = filters.h; sourceTree = ""; }; A7DA204F113FECD400BF472F /* filterseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = filterseqscommand.cpp; sourceTree = ""; }; A7DA2050113FECD400BF472F /* filterseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = filterseqscommand.h; sourceTree = ""; }; A7DA2051113FECD400BF472F /* formatcolumn.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = formatcolumn.cpp; sourceTree = ""; }; A7DA2052113FECD400BF472F /* formatcolumn.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = formatcolumn.h; sourceTree = ""; }; A7DA2053113FECD400BF472F /* formatmatrix.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = formatmatrix.h; sourceTree = ""; }; A7DA2054113FECD400BF472F /* formatphylip.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = formatphylip.cpp; sourceTree = ""; }; A7DA2055113FECD400BF472F /* formatphylip.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = formatphylip.h; sourceTree = ""; }; A7DA2056113FECD400BF472F /* fullmatrix.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = fullmatrix.cpp; sourceTree = ""; }; A7DA2057113FECD400BF472F /* fullmatrix.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = fullmatrix.h; sourceTree = ""; }; A7DA2058113FECD400BF472F /* geom.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = geom.cpp; sourceTree = ""; }; A7DA2059113FECD400BF472F /* geom.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = geom.h; sourceTree = ""; }; A7DA205A113FECD400BF472F /* getgroupcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getgroupcommand.cpp; sourceTree = ""; }; A7DA205B113FECD400BF472F /* getgroupcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getgroupcommand.h; sourceTree = ""; }; A7DA205C113FECD400BF472F /* getlabelcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getlabelcommand.cpp; sourceTree = ""; }; A7DA205D113FECD400BF472F /* getlabelcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getlabelcommand.h; sourceTree = ""; }; A7DA205E113FECD400BF472F /* getlistcountcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getlistcountcommand.cpp; sourceTree = ""; }; A7DA205F113FECD400BF472F /* getlistcountcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getlistcountcommand.h; sourceTree = ""; }; A7DA2060113FECD400BF472F /* getoturepcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getoturepcommand.cpp; sourceTree = ""; }; A7DA2061113FECD400BF472F /* getoturepcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getoturepcommand.h; sourceTree = ""; }; A7DA2062113FECD400BF472F /* getrabundcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getrabundcommand.cpp; sourceTree = ""; }; A7DA2063113FECD400BF472F /* getrabundcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getrabundcommand.h; sourceTree = ""; }; A7DA2064113FECD400BF472F /* getsabundcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getsabundcommand.cpp; sourceTree = ""; }; A7DA2065113FECD400BF472F /* getsabundcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getsabundcommand.h; sourceTree = ""; }; A7DA2066113FECD400BF472F /* getseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getseqscommand.cpp; sourceTree = ""; }; A7DA2067113FECD400BF472F /* getseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getseqscommand.h; sourceTree = ""; }; A7DA2068113FECD400BF472F /* getsharedotucommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getsharedotucommand.cpp; sourceTree = ""; }; A7DA2069113FECD400BF472F /* getsharedotucommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getsharedotucommand.h; sourceTree = ""; }; A7DA206A113FECD400BF472F /* globaldata.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = globaldata.cpp; sourceTree = ""; }; A7DA206B113FECD400BF472F /* globaldata.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = globaldata.hpp; sourceTree = ""; }; A7DA206C113FECD400BF472F /* goodscoverage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = goodscoverage.cpp; sourceTree = ""; }; A7DA206D113FECD400BF472F /* goodscoverage.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = goodscoverage.h; sourceTree = ""; }; A7DA206E113FECD400BF472F /* gotohoverlap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = gotohoverlap.cpp; sourceTree = ""; }; A7DA206F113FECD400BF472F /* gotohoverlap.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = gotohoverlap.hpp; sourceTree = ""; }; A7DA2070113FECD400BF472F /* groupmap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = groupmap.cpp; sourceTree = ""; }; A7DA2071113FECD400BF472F /* groupmap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = groupmap.h; sourceTree = ""; }; A7DA2072113FECD400BF472F /* hcluster.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = hcluster.cpp; sourceTree = ""; }; A7DA2073113FECD400BF472F /* hcluster.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = hcluster.h; sourceTree = ""; }; A7DA2074113FECD400BF472F /* hclustercommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = hclustercommand.cpp; sourceTree = ""; }; A7DA2075113FECD400BF472F /* hclustercommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = hclustercommand.h; sourceTree = ""; }; A7DA2076113FECD400BF472F /* heatmap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = heatmap.cpp; sourceTree = ""; }; A7DA2077113FECD400BF472F /* heatmap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = heatmap.h; sourceTree = ""; }; A7DA2078113FECD400BF472F /* heatmapcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = heatmapcommand.cpp; sourceTree = ""; }; A7DA2079113FECD400BF472F /* heatmapcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = heatmapcommand.h; sourceTree = ""; }; A7DA207A113FECD400BF472F /* heatmapsim.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = heatmapsim.cpp; sourceTree = ""; }; A7DA207B113FECD400BF472F /* heatmapsim.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = heatmapsim.h; sourceTree = ""; }; A7DA207C113FECD400BF472F /* heatmapsimcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = heatmapsimcommand.cpp; sourceTree = ""; }; A7DA207D113FECD400BF472F /* heatmapsimcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = heatmapsimcommand.h; sourceTree = ""; }; A7DA207E113FECD400BF472F /* helpcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = helpcommand.cpp; sourceTree = ""; }; A7DA207F113FECD400BF472F /* helpcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = helpcommand.h; sourceTree = ""; }; A7DA2080113FECD400BF472F /* ignoregaps.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = ignoregaps.h; sourceTree = ""; }; A7DA2081113FECD400BF472F /* inputdata.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = inputdata.cpp; sourceTree = ""; }; A7DA2082113FECD400BF472F /* inputdata.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = inputdata.h; sourceTree = ""; }; A7DA2083113FECD400BF472F /* jackknife.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = jackknife.cpp; sourceTree = ""; }; A7DA2084113FECD400BF472F /* jackknife.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = jackknife.h; sourceTree = ""; }; A7DA2085113FECD400BF472F /* kmer.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = kmer.cpp; sourceTree = ""; }; A7DA2086113FECD400BF472F /* kmer.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = kmer.hpp; sourceTree = ""; }; A7DA2087113FECD400BF472F /* kmerdb.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = kmerdb.cpp; sourceTree = ""; }; A7DA2088113FECD400BF472F /* kmerdb.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = kmerdb.hpp; sourceTree = ""; }; A7DA2089113FECD400BF472F /* knn.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = knn.cpp; sourceTree = ""; }; A7DA208A113FECD400BF472F /* knn.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = knn.h; sourceTree = ""; }; A7DA208B113FECD400BF472F /* libshuff.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = libshuff.cpp; sourceTree = ""; }; A7DA208C113FECD400BF472F /* libshuff.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = libshuff.h; sourceTree = ""; }; A7DA208D113FECD400BF472F /* libshuffcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = libshuffcommand.cpp; sourceTree = ""; }; A7DA208E113FECD400BF472F /* libshuffcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = libshuffcommand.h; sourceTree = ""; }; A7DA208F113FECD400BF472F /* listseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = listseqscommand.cpp; sourceTree = ""; }; A7DA2090113FECD400BF472F /* listseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = listseqscommand.h; sourceTree = ""; }; A7DA2091113FECD400BF472F /* listvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = listvector.cpp; sourceTree = ""; }; A7DA2092113FECD400BF472F /* listvector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = listvector.hpp; sourceTree = ""; }; A7DA2093113FECD400BF472F /* logsd.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = logsd.cpp; sourceTree = ""; }; A7DA2094113FECD400BF472F /* logsd.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = logsd.h; sourceTree = ""; }; A7DA2095113FECD400BF472F /* maligner.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = maligner.cpp; sourceTree = ""; }; A7DA2096113FECD400BF472F /* maligner.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = maligner.h; sourceTree = ""; }; A7DA2098113FECD400BF472F /* matrixoutputcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = matrixoutputcommand.cpp; sourceTree = ""; }; A7DA2099113FECD400BF472F /* matrixoutputcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = matrixoutputcommand.h; sourceTree = ""; }; A7DA209A113FECD400BF472F /* mergefilecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = mergefilecommand.cpp; sourceTree = ""; }; A7DA209B113FECD400BF472F /* mergefilecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = mergefilecommand.h; sourceTree = ""; }; A7DA209C113FECD400BF472F /* mgclustercommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = mgclustercommand.cpp; sourceTree = ""; }; A7DA209D113FECD400BF472F /* mgclustercommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = mgclustercommand.h; sourceTree = ""; }; A7DA209E113FECD400BF472F /* mothur.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = mothur.cpp; sourceTree = ""; }; A7DA209F113FECD400BF472F /* mothur.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = mothur.h; sourceTree = ""; }; A7DA20A0113FECD400BF472F /* mothurout.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = mothurout.cpp; sourceTree = ""; }; A7DA20A1113FECD400BF472F /* mothurout.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = mothurout.h; sourceTree = ""; }; A7DA20A2113FECD400BF472F /* nameassignment.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = nameassignment.cpp; sourceTree = ""; }; A7DA20A3113FECD400BF472F /* nameassignment.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = nameassignment.hpp; sourceTree = ""; }; A7DA20A4113FECD400BF472F /* nast.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = nast.cpp; sourceTree = ""; }; A7DA20A5113FECD400BF472F /* nast.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = nast.hpp; sourceTree = ""; }; A7DA20A6113FECD400BF472F /* nastreport.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = nastreport.cpp; sourceTree = ""; }; A7DA20A7113FECD400BF472F /* nastreport.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = nastreport.hpp; sourceTree = ""; }; A7DA20A8113FECD400BF472F /* needlemanoverlap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = needlemanoverlap.cpp; sourceTree = ""; }; A7DA20A9113FECD400BF472F /* needlemanoverlap.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = needlemanoverlap.hpp; sourceTree = ""; }; A7DA20AA113FECD400BF472F /* noalign.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = noalign.cpp; sourceTree = ""; }; A7DA20AB113FECD400BF472F /* noalign.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = noalign.hpp; sourceTree = ""; }; A7DA20AC113FECD400BF472F /* nocommands.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = nocommands.cpp; sourceTree = ""; }; A7DA20AD113FECD400BF472F /* nocommands.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = nocommands.h; sourceTree = ""; }; A7DA20AE113FECD400BF472F /* npshannon.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = npshannon.cpp; sourceTree = ""; }; A7DA20AF113FECD400BF472F /* npshannon.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = npshannon.h; sourceTree = ""; }; A7DA20B0113FECD400BF472F /* nseqs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = nseqs.h; sourceTree = ""; }; A7DA20B1113FECD400BF472F /* observable.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = observable.h; sourceTree = ""; }; A7DA20B2113FECD400BF472F /* onegapdist.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = onegapdist.h; sourceTree = ""; }; A7DA20B3113FECD400BF472F /* onegapignore.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = onegapignore.h; sourceTree = ""; }; A7DA20B4113FECD400BF472F /* optionparser.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = optionparser.cpp; sourceTree = ""; }; A7DA20B5113FECD400BF472F /* optionparser.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = optionparser.h; sourceTree = ""; }; A7DA20B6113FECD400BF472F /* ordervector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = ordervector.cpp; sourceTree = ""; }; A7DA20B7113FECD400BF472F /* ordervector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = ordervector.hpp; sourceTree = ""; }; A7DA20B8113FECD400BF472F /* otuhierarchycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = otuhierarchycommand.cpp; sourceTree = ""; }; A7DA20B9113FECD400BF472F /* otuhierarchycommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = otuhierarchycommand.h; sourceTree = ""; }; A7DA20BA113FECD400BF472F /* overlap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = overlap.cpp; sourceTree = ""; }; A7DA20BB113FECD400BF472F /* overlap.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = overlap.hpp; sourceTree = ""; }; A7DA20BC113FECD400BF472F /* parselistscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = parselistscommand.cpp; sourceTree = ""; }; A7DA20BD113FECD400BF472F /* parselistscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = parselistscommand.h; sourceTree = ""; }; A7DA20BE113FECD400BF472F /* parsimony.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = parsimony.cpp; sourceTree = ""; }; A7DA20BF113FECD400BF472F /* parsimony.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = parsimony.h; sourceTree = ""; }; A7DA20C0113FECD400BF472F /* parsimonycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = parsimonycommand.cpp; sourceTree = ""; }; A7DA20C1113FECD400BF472F /* parsimonycommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = parsimonycommand.h; sourceTree = ""; }; A7DA20C2113FECD400BF472F /* pcacommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = pcacommand.cpp; sourceTree = ""; }; A7DA20C3113FECD400BF472F /* pcacommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = pcacommand.h; sourceTree = ""; }; A7DA20C4113FECD400BF472F /* phylotree.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = phylotree.cpp; sourceTree = ""; }; A7DA20C5113FECD400BF472F /* phylotree.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = phylotree.h; sourceTree = ""; }; A7DA20C6113FECD400BF472F /* phylotypecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = phylotypecommand.cpp; sourceTree = ""; }; A7DA20C7113FECD400BF472F /* phylotypecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = phylotypecommand.h; sourceTree = ""; }; A7DA20C8113FECD400BF472F /* pintail.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = pintail.cpp; sourceTree = ""; }; A7DA20C9113FECD400BF472F /* pintail.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = pintail.h; sourceTree = ""; }; A7DA20CA113FECD400BF472F /* preclustercommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = preclustercommand.cpp; sourceTree = ""; }; A7DA20CB113FECD400BF472F /* preclustercommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = preclustercommand.h; sourceTree = ""; }; A7DA20CC113FECD400BF472F /* progress.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = progress.cpp; sourceTree = ""; }; A7DA20CD113FECD400BF472F /* progress.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = progress.hpp; sourceTree = ""; }; A7DA20CE113FECD400BF472F /* qstat.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = qstat.cpp; sourceTree = ""; }; A7DA20CF113FECD400BF472F /* qstat.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = qstat.h; sourceTree = ""; }; A7DA20D0113FECD400BF472F /* quitcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = quitcommand.cpp; sourceTree = ""; }; A7DA20D1113FECD400BF472F /* quitcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = quitcommand.h; sourceTree = ""; }; A7DA20D2113FECD400BF472F /* rabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rabundvector.cpp; sourceTree = ""; }; A7DA20D3113FECD400BF472F /* rabundvector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = rabundvector.hpp; sourceTree = ""; }; A7DA20D4113FECD400BF472F /* rarecalc.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rarecalc.cpp; sourceTree = ""; }; A7DA20D5113FECD400BF472F /* rarecalc.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarecalc.h; sourceTree = ""; }; A7DA20D6113FECD400BF472F /* raredisplay.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = raredisplay.cpp; sourceTree = ""; }; A7DA20D7113FECD400BF472F /* raredisplay.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = raredisplay.h; sourceTree = ""; }; A7DA20D8113FECD400BF472F /* rarefact.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rarefact.cpp; sourceTree = ""; }; A7DA20D9113FECD400BF472F /* rarefact.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarefact.h; sourceTree = ""; }; A7DA20DA113FECD400BF472F /* rarefactcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rarefactcommand.cpp; sourceTree = ""; }; A7DA20DB113FECD400BF472F /* rarefactcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarefactcommand.h; sourceTree = ""; }; A7DA20DC113FECD400BF472F /* rarefactioncurvedata.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarefactioncurvedata.h; sourceTree = ""; }; A7DA20DD113FECD400BF472F /* rarefactsharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = rarefactsharedcommand.cpp; sourceTree = ""; }; A7DA20DE113FECD400BF472F /* rarefactsharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = rarefactsharedcommand.h; sourceTree = ""; }; A7DA20DF113FECD400BF472F /* readblast.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readblast.cpp; sourceTree = ""; }; A7DA20E0113FECD400BF472F /* readblast.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readblast.h; sourceTree = ""; }; A7DA20E1113FECD400BF472F /* readcluster.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readcluster.cpp; sourceTree = ""; }; A7DA20E2113FECD400BF472F /* readcluster.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readcluster.h; sourceTree = ""; }; A7DA20E3113FECD400BF472F /* readcolumn.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readcolumn.cpp; sourceTree = ""; }; A7DA20E4113FECD400BF472F /* readcolumn.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readcolumn.h; sourceTree = ""; }; A7DA20E5113FECD400BF472F /* readdistcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readdistcommand.cpp; sourceTree = ""; }; A7DA20E6113FECD400BF472F /* readdistcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readdistcommand.h; sourceTree = ""; }; A7DA20E7113FECD400BF472F /* readmatrix.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = readmatrix.hpp; sourceTree = ""; }; A7DA20E8113FECD400BF472F /* readotu.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readotu.cpp; sourceTree = ""; }; A7DA20E9113FECD400BF472F /* readotu.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readotu.h; sourceTree = ""; }; A7DA20EA113FECD400BF472F /* readotucommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readotucommand.cpp; sourceTree = ""; }; A7DA20EB113FECD400BF472F /* readotucommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readotucommand.h; sourceTree = ""; }; A7DA20EC113FECD400BF472F /* readphylip.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readphylip.cpp; sourceTree = ""; }; A7DA20ED113FECD400BF472F /* readphylip.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readphylip.h; sourceTree = ""; }; A7DA20EE113FECD400BF472F /* readtree.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readtree.cpp; sourceTree = ""; }; A7DA20EF113FECD400BF472F /* readtree.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readtree.h; sourceTree = ""; }; A7DA20F0113FECD400BF472F /* readtreecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = readtreecommand.cpp; sourceTree = ""; }; A7DA20F1113FECD400BF472F /* readtreecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = readtreecommand.h; sourceTree = ""; }; A7DA20F2113FECD400BF472F /* removeseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = removeseqscommand.cpp; sourceTree = ""; }; A7DA20F3113FECD400BF472F /* removeseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = removeseqscommand.h; sourceTree = ""; }; A7DA20F4113FECD400BF472F /* reversecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = reversecommand.cpp; sourceTree = ""; }; A7DA20F5113FECD400BF472F /* reversecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = reversecommand.h; sourceTree = ""; }; A7DA20F6113FECD400BF472F /* sabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sabundvector.cpp; sourceTree = ""; }; A7DA20F7113FECD400BF472F /* sabundvector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = sabundvector.hpp; sourceTree = ""; }; A7DA20F8113FECD400BF472F /* screenseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = screenseqscommand.cpp; sourceTree = ""; }; A7DA20F9113FECD400BF472F /* screenseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = screenseqscommand.h; sourceTree = ""; }; A7DA20FA113FECD400BF472F /* secondarystructurecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = secondarystructurecommand.cpp; sourceTree = ""; }; A7DA20FB113FECD400BF472F /* secondarystructurecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = secondarystructurecommand.h; sourceTree = ""; }; A7DA20FC113FECD400BF472F /* seqsummarycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = seqsummarycommand.cpp; sourceTree = ""; }; A7DA20FD113FECD400BF472F /* seqsummarycommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = seqsummarycommand.h; sourceTree = ""; }; A7DA20FE113FECD400BF472F /* sequence.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sequence.cpp; sourceTree = ""; }; A7DA20FF113FECD400BF472F /* sequence.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = sequence.hpp; sourceTree = ""; }; A7DA2100113FECD400BF472F /* sequencedb.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sequencedb.cpp; sourceTree = ""; }; A7DA2101113FECD400BF472F /* sequencedb.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sequencedb.h; sourceTree = ""; }; A7DA2102113FECD400BF472F /* setdircommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = setdircommand.cpp; sourceTree = ""; }; A7DA2103113FECD400BF472F /* setdircommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = setdircommand.h; sourceTree = ""; }; A7DA2104113FECD400BF472F /* shannon.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = shannon.cpp; sourceTree = ""; }; A7DA2105113FECD400BF472F /* shannon.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = shannon.h; sourceTree = ""; }; A7DA2106113FECD400BF472F /* sharedace.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedace.cpp; sourceTree = ""; }; A7DA2107113FECD400BF472F /* sharedace.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedace.h; sourceTree = ""; }; A7DA2108113FECD400BF472F /* sharedanderberg.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedanderberg.h; sourceTree = ""; }; A7DA2109113FECD400BF472F /* sharedanderbergs.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedanderbergs.cpp; sourceTree = ""; }; A7DA210A113FECD400BF472F /* sharedanderbergs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedanderbergs.h; sourceTree = ""; }; A7DA210B113FECD400BF472F /* sharedbraycurtis.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedbraycurtis.cpp; sourceTree = ""; }; A7DA210C113FECD400BF472F /* sharedbraycurtis.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedbraycurtis.h; sourceTree = ""; }; A7DA210D113FECD400BF472F /* sharedchao1.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedchao1.cpp; sourceTree = ""; }; A7DA210E113FECD400BF472F /* sharedchao1.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedchao1.h; sourceTree = ""; }; A7DA210F113FECD400BF472F /* sharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedcommand.cpp; sourceTree = ""; }; A7DA2110113FECD400BF472F /* sharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedcommand.h; sourceTree = ""; }; A7DA2111113FECD400BF472F /* sharedjabund.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedjabund.cpp; sourceTree = ""; }; A7DA2112113FECD400BF472F /* sharedjabund.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedjabund.h; sourceTree = ""; }; A7DA2113113FECD400BF472F /* sharedjackknife.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedjackknife.cpp; sourceTree = ""; }; A7DA2114113FECD400BF472F /* sharedjackknife.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedjackknife.h; sourceTree = ""; }; A7DA2115113FECD400BF472F /* sharedjclass.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedjclass.cpp; sourceTree = ""; }; A7DA2116113FECD400BF472F /* sharedjclass.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedjclass.h; sourceTree = ""; }; A7DA2117113FECD400BF472F /* sharedjest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedjest.cpp; sourceTree = ""; }; A7DA2118113FECD400BF472F /* sharedjest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedjest.h; sourceTree = ""; }; A7DA2119113FECD400BF472F /* sharedkstest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedkstest.cpp; sourceTree = ""; }; A7DA211A113FECD400BF472F /* sharedkstest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedkstest.h; sourceTree = ""; }; A7DA211B113FECD400BF472F /* sharedkulczynski.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedkulczynski.cpp; sourceTree = ""; }; A7DA211C113FECD400BF472F /* sharedkulczynski.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedkulczynski.h; sourceTree = ""; }; A7DA211D113FECD400BF472F /* sharedkulczynskicody.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedkulczynskicody.cpp; sourceTree = ""; }; A7DA211E113FECD400BF472F /* sharedkulczynskicody.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedkulczynskicody.h; sourceTree = ""; }; A7DA211F113FECD400BF472F /* sharedlennon.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedlennon.cpp; sourceTree = ""; }; A7DA2120113FECD400BF472F /* sharedlennon.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedlennon.h; sourceTree = ""; }; A7DA2121113FECD400BF472F /* sharedlistvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedlistvector.cpp; sourceTree = ""; }; A7DA2122113FECD400BF472F /* sharedlistvector.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedlistvector.h; sourceTree = ""; }; A7DA2123113FECD400BF472F /* sharedmarczewski.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedmarczewski.cpp; sourceTree = ""; }; A7DA2124113FECD400BF472F /* sharedmarczewski.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedmarczewski.h; sourceTree = ""; }; A7DA2125113FECD400BF472F /* sharedmorisitahorn.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedmorisitahorn.cpp; sourceTree = ""; }; A7DA2126113FECD400BF472F /* sharedmorisitahorn.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedmorisitahorn.h; sourceTree = ""; }; A7DA2127113FECD400BF472F /* sharednseqs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharednseqs.h; sourceTree = ""; }; A7DA2128113FECD400BF472F /* sharedochiai.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedochiai.cpp; sourceTree = ""; }; A7DA2129113FECD400BF472F /* sharedochiai.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedochiai.h; sourceTree = ""; }; A7DA212A113FECD400BF472F /* sharedordervector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedordervector.cpp; sourceTree = ""; }; A7DA212B113FECD400BF472F /* sharedordervector.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedordervector.h; sourceTree = ""; }; A7DA212C113FECD400BF472F /* sharedrabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedrabundvector.cpp; sourceTree = ""; }; A7DA212D113FECD400BF472F /* sharedrabundvector.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedrabundvector.h; sourceTree = ""; }; A7DA212E113FECD400BF472F /* sharedsabundvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsabundvector.cpp; sourceTree = ""; }; A7DA212F113FECD400BF472F /* sharedsabundvector.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsabundvector.h; sourceTree = ""; }; A7DA2130113FECD400BF472F /* sharedsobs.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsobs.cpp; sourceTree = ""; }; A7DA2131113FECD400BF472F /* sharedsobs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsobs.h; sourceTree = ""; }; A7DA2132113FECD400BF472F /* sharedsobscollectsummary.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsobscollectsummary.cpp; sourceTree = ""; }; A7DA2133113FECD400BF472F /* sharedsobscollectsummary.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsobscollectsummary.h; sourceTree = ""; }; A7DA2134113FECD400BF472F /* sharedsorabund.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsorabund.cpp; sourceTree = ""; }; A7DA2135113FECD400BF472F /* sharedsorabund.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsorabund.h; sourceTree = ""; }; A7DA2136113FECD400BF472F /* sharedsorclass.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsorclass.cpp; sourceTree = ""; }; A7DA2137113FECD400BF472F /* sharedsorclass.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsorclass.h; sourceTree = ""; }; A7DA2138113FECD400BF472F /* sharedsorest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedsorest.cpp; sourceTree = ""; }; A7DA2139113FECD400BF472F /* sharedsorest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedsorest.h; sourceTree = ""; }; A7DA213A113FECD400BF472F /* sharedthetan.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedthetan.cpp; sourceTree = ""; }; A7DA213B113FECD400BF472F /* sharedthetan.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedthetan.h; sourceTree = ""; }; A7DA213C113FECD400BF472F /* sharedthetayc.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedthetayc.cpp; sourceTree = ""; }; A7DA213D113FECD400BF472F /* sharedthetayc.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedthetayc.h; sourceTree = ""; }; A7DA213E113FECD400BF472F /* sharedutilities.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedutilities.cpp; sourceTree = ""; }; A7DA213F113FECD400BF472F /* sharedutilities.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedutilities.h; sourceTree = ""; }; A7DA2140113FECD400BF472F /* shen.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = shen.cpp; sourceTree = ""; }; A7DA2141113FECD400BF472F /* shen.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = shen.h; sourceTree = ""; }; A7DA2142113FECD400BF472F /* simpson.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = simpson.cpp; sourceTree = ""; }; A7DA2143113FECD400BF472F /* simpson.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = simpson.h; sourceTree = ""; }; A7DA2144113FECD400BF472F /* singlelinkage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = singlelinkage.cpp; sourceTree = ""; }; A7DA2145113FECD400BF472F /* slayer.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = slayer.cpp; sourceTree = ""; }; A7DA2146113FECD400BF472F /* slayer.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = slayer.h; sourceTree = ""; }; A7DA2147113FECD400BF472F /* slibshuff.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = slibshuff.cpp; sourceTree = ""; }; A7DA2148113FECD400BF472F /* slibshuff.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = slibshuff.h; sourceTree = ""; }; A7DA2149113FECD400BF472F /* sobs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sobs.h; sourceTree = ""; }; A7DA214A113FECD400BF472F /* solow.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = solow.cpp; sourceTree = ""; }; A7DA214B113FECD400BF472F /* solow.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = solow.h; sourceTree = ""; }; A7DA214C113FECD400BF472F /* sparsematrix.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sparsematrix.cpp; sourceTree = ""; }; A7DA214D113FECD400BF472F /* sparsematrix.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = sparsematrix.hpp; sourceTree = ""; }; A7DA214E113FECD400BF472F /* suffixdb.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = suffixdb.cpp; sourceTree = ""; }; A7DA214F113FECD400BF472F /* suffixdb.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = suffixdb.hpp; sourceTree = ""; }; A7DA2150113FECD400BF472F /* suffixnodes.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = suffixnodes.cpp; sourceTree = ""; }; A7DA2151113FECD400BF472F /* suffixnodes.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = suffixnodes.hpp; sourceTree = ""; }; A7DA2152113FECD400BF472F /* suffixtree.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = suffixtree.cpp; sourceTree = ""; }; A7DA2153113FECD400BF472F /* suffixtree.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = suffixtree.hpp; sourceTree = ""; }; A7DA2154113FECD400BF472F /* summarycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = summarycommand.cpp; sourceTree = ""; }; A7DA2155113FECD400BF472F /* summarycommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = summarycommand.h; sourceTree = ""; }; A7DA2158113FECD400BF472F /* summarysharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = summarysharedcommand.cpp; sourceTree = ""; }; A7DA2159113FECD400BF472F /* summarysharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = summarysharedcommand.h; sourceTree = ""; }; A7DA215A113FECD400BF472F /* systemcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = systemcommand.cpp; sourceTree = ""; }; A7DA215B113FECD400BF472F /* systemcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = systemcommand.h; sourceTree = ""; }; A7DA215C113FECD400BF472F /* taxonomyequalizer.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = taxonomyequalizer.cpp; sourceTree = ""; }; A7DA215D113FECD400BF472F /* taxonomyequalizer.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = taxonomyequalizer.h; sourceTree = ""; }; A7DA215E113FECD400BF472F /* tree.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = tree.cpp; sourceTree = ""; }; A7DA215F113FECD400BF472F /* tree.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = tree.h; sourceTree = ""; }; A7DA2160113FECD400BF472F /* treecalculator.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = treecalculator.h; sourceTree = ""; }; A7DA2161113FECD400BF472F /* treegroupscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = treegroupscommand.cpp; sourceTree = ""; }; A7DA2162113FECD400BF472F /* treegroupscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = treegroupscommand.h; sourceTree = ""; }; A7DA2163113FECD400BF472F /* treemap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = treemap.cpp; sourceTree = ""; }; A7DA2164113FECD400BF472F /* treemap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = treemap.h; sourceTree = ""; }; A7DA2165113FECD400BF472F /* treenode.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = treenode.cpp; sourceTree = ""; }; A7DA2166113FECD400BF472F /* treenode.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = treenode.h; sourceTree = ""; }; A7DA2167113FECD400BF472F /* trimseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = trimseqscommand.cpp; sourceTree = ""; }; A7DA2168113FECD400BF472F /* trimseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = trimseqscommand.h; sourceTree = ""; }; A7DA2169113FECD400BF472F /* unifracunweightedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = unifracunweightedcommand.cpp; sourceTree = ""; }; A7DA216A113FECD400BF472F /* unifracunweightedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = unifracunweightedcommand.h; sourceTree = ""; }; A7DA216B113FECD400BF472F /* unifracweightedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = unifracweightedcommand.cpp; sourceTree = ""; }; A7DA216C113FECD400BF472F /* unifracweightedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = unifracweightedcommand.h; sourceTree = ""; }; A7DA216D113FECD400BF472F /* unweighted.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = unweighted.cpp; sourceTree = ""; }; A7DA216E113FECD400BF472F /* unweighted.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = unweighted.h; sourceTree = ""; }; A7DA216F113FECD400BF472F /* uvest.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = uvest.cpp; sourceTree = ""; }; A7DA2170113FECD400BF472F /* uvest.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = uvest.h; sourceTree = ""; }; A7DA2171113FECD400BF472F /* validcalculator.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = validcalculator.cpp; sourceTree = ""; }; A7DA2172113FECD400BF472F /* validcalculator.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = validcalculator.h; sourceTree = ""; }; A7DA2173113FECD400BF472F /* validparameter.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = validparameter.cpp; sourceTree = ""; }; A7DA2174113FECD400BF472F /* validparameter.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = validparameter.h; sourceTree = ""; }; A7DA2175113FECD400BF472F /* venn.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = venn.cpp; sourceTree = ""; }; A7DA2176113FECD400BF472F /* venn.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = venn.h; sourceTree = ""; }; A7DA2177113FECD400BF472F /* venncommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = venncommand.cpp; sourceTree = ""; }; A7DA2178113FECD400BF472F /* venncommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = venncommand.h; sourceTree = ""; }; A7DA2179113FECD400BF472F /* weighted.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = weighted.cpp; sourceTree = ""; }; A7DA217A113FECD400BF472F /* weighted.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = weighted.h; sourceTree = ""; }; A7DA217B113FECD400BF472F /* whittaker.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = whittaker.cpp; sourceTree = ""; }; A7DA217C113FECD400BF472F /* whittaker.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = whittaker.h; sourceTree = ""; }; A7E8338B115BBDAA00739EC4 /* parsesffcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = parsesffcommand.cpp; sourceTree = ""; }; A7E8338C115BBDAA00739EC4 /* parsesffcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = parsesffcommand.h; sourceTree = ""; }; /* End PBXFileReference section */ /* Begin PBXGroup section */ 08FB7794FE84155DC02AAC07 /* mothur */ = { isa = PBXGroup; children = ( A7639F8D1175DF35008F5578 /* makefile */, A7DA1FF0113FECD400BF472F /* alignment.cpp */, A7DA1FF1113FECD400BF472F /* alignment.hpp */, A7DA1FF6113FECD400BF472F /* averagelinkage.cpp */, A7DA2000113FECD400BF472F /* blastalign.hpp */, A7DA1FFF113FECD400BF472F /* blastalign.cpp */, A7DA201F113FECD400BF472F /* cluster.cpp */, A7DA2020113FECD400BF472F /* cluster.hpp */, A7CB593B11402EF90010EB83 /* calculators */, A7CB594A11402FB40010EB83 /* chimeras */, A7CB594511402F6E0010EB83 /* classifers */, A7CB593E11402F110010EB83 /* commands */, A7CB594211402F430010EB83 /* containers */, A7DA2023113FECD400BF472F /* collect.cpp */, A7DA2024113FECD400BF472F /* collect.h */, A7DA2027113FECD400BF472F /* collectdisplay.h */, A7DA2028113FECD400BF472F /* collectorscurvedata.h */, A7DA202C113FECD400BF472F /* commandfactory.cpp */, A7DA202D113FECD400BF472F /* commandfactory.hpp */, A7DA202E113FECD400BF472F /* commandoptionparser.cpp */, A7DA202F113FECD400BF472F /* commandoptionparser.hpp */, A7DA2030113FECD400BF472F /* completelinkage.cpp */, A7DA203C113FECD400BF472F /* display.h */, A7DA2042113FECD400BF472F /* dlibshuff.cpp */, A7DA2043113FECD400BF472F /* dlibshuff.h */, A7DA2048113FECD400BF472F /* engine.cpp */, A7DA2049113FECD400BF472F /* engine.hpp */, A7DA204C113FECD400BF472F /* fileoutput.cpp */, A7DA204D113FECD400BF472F /* fileoutput.h */, A7DA206A113FECD400BF472F /* globaldata.cpp */, A7DA206B113FECD400BF472F /* globaldata.hpp */, A7DA206E113FECD400BF472F /* gotohoverlap.cpp */, A7DA206F113FECD400BF472F /* gotohoverlap.hpp */, A7DA2072113FECD400BF472F /* hcluster.cpp */, A7DA2073113FECD400BF472F /* hcluster.h */, A7DA2076113FECD400BF472F /* heatmap.cpp */, A7DA2077113FECD400BF472F /* heatmap.h */, A7DA207A113FECD400BF472F /* heatmapsim.cpp */, A7DA207B113FECD400BF472F /* heatmapsim.h */, A7DA2081113FECD400BF472F /* inputdata.cpp */, A7DA2082113FECD400BF472F /* inputdata.h */, A7DA208B113FECD400BF472F /* libshuff.cpp */, A7DA208C113FECD400BF472F /* libshuff.h */, A7DA209E113FECD400BF472F /* mothur.cpp */, A7DA209F113FECD400BF472F /* mothur.h */, A7DA20A0113FECD400BF472F /* mothurout.cpp */, A7DA20A1113FECD400BF472F /* mothurout.h */, A7DA20A4113FECD400BF472F /* nast.cpp */, A7DA20A5113FECD400BF472F /* nast.hpp */, A7DA20A6113FECD400BF472F /* nastreport.cpp */, A7DA20A7113FECD400BF472F /* nastreport.hpp */, A7DA20A8113FECD400BF472F /* needlemanoverlap.cpp */, A7DA20A9113FECD400BF472F /* needlemanoverlap.hpp */, A7DA20AA113FECD400BF472F /* noalign.cpp */, A7DA20AB113FECD400BF472F /* noalign.hpp */, A7DA20B1113FECD400BF472F /* observable.h */, A7DA20B4113FECD400BF472F /* optionparser.cpp */, A7DA20B5113FECD400BF472F /* optionparser.h */, A7DA20BA113FECD400BF472F /* overlap.cpp */, A7DA20BB113FECD400BF472F /* overlap.hpp */, A7DA20CC113FECD400BF472F /* progress.cpp */, A7DA20CD113FECD400BF472F /* progress.hpp */, A7DA20D4113FECD400BF472F /* rarecalc.cpp */, A7DA20D5113FECD400BF472F /* rarecalc.h */, A7DA20D6113FECD400BF472F /* raredisplay.cpp */, A7DA20D7113FECD400BF472F /* raredisplay.h */, A7DA20D8113FECD400BF472F /* rarefact.cpp */, A7DA20D9113FECD400BF472F /* rarefact.h */, A7DA20DC113FECD400BF472F /* rarefactioncurvedata.h */, A7CB5953114033220010EB83 /* read */, A7DA213E113FECD400BF472F /* sharedutilities.cpp */, A7DA213F113FECD400BF472F /* sharedutilities.h */, A7DA2144113FECD400BF472F /* singlelinkage.cpp */, A7DA2147113FECD400BF472F /* slibshuff.cpp */, A7DA2148113FECD400BF472F /* slibshuff.h */, A7DA2171113FECD400BF472F /* validcalculator.cpp */, A7DA2172113FECD400BF472F /* validcalculator.h */, A7DA2173113FECD400BF472F /* validparameter.cpp */, A7DA2174113FECD400BF472F /* validparameter.h */, A7DA2175113FECD400BF472F /* venn.cpp */, A7DA2176113FECD400BF472F /* venn.h */, ); name = mothur; sourceTree = ""; }; A7CB593B11402EF90010EB83 /* calculators */ = { isa = PBXGroup; children = ( A7DA200B113FECD400BF472F /* calculator.cpp */, A7DA200C113FECD400BF472F /* calculator.h */, A7DA1FED113FECD400BF472F /* ace.h */, A7DA1FEC113FECD400BF472F /* ace.cpp */, A7DA1FFB113FECD400BF472F /* bergerparker.cpp */, A7DA1FFC113FECD400BF472F /* bergerparker.h */, A7DA2003113FECD400BF472F /* boneh.cpp */, A7DA2004113FECD400BF472F /* boneh.h */, A7DA2005113FECD400BF472F /* bootstrap.cpp */, A7DA2006113FECD400BF472F /* bootstrap.h */, A7DA2009113FECD400BF472F /* bstick.cpp */, A7DA200A113FECD400BF472F /* bstick.h */, A7DA200F113FECD400BF472F /* chao1.cpp */, A7DA2010113FECD400BF472F /* chao1.h */, A7DA2033113FECD400BF472F /* coverage.cpp */, A7DA2034113FECD400BF472F /* coverage.h */, A7DA203D113FECD400BF472F /* dist.h */, A7DA2044113FECD400BF472F /* eachgapdist.h */, A7DA2045113FECD400BF472F /* eachgapignore.h */, A7DA2046113FECD400BF472F /* efron.cpp */, A7DA2047113FECD400BF472F /* efron.h */, A7DA204E113FECD400BF472F /* filters.h */, A7DA2058113FECD400BF472F /* geom.cpp */, A7DA2059113FECD400BF472F /* geom.h */, A7DA206C113FECD400BF472F /* goodscoverage.cpp */, A7DA206D113FECD400BF472F /* goodscoverage.h */, A7DA2080113FECD400BF472F /* ignoregaps.h */, A7DA2083113FECD400BF472F /* jackknife.cpp */, A7DA2084113FECD400BF472F /* jackknife.h */, A7DA2093113FECD400BF472F /* logsd.cpp */, A7DA2094113FECD400BF472F /* logsd.h */, A7DA20AE113FECD400BF472F /* npshannon.cpp */, A7DA20AF113FECD400BF472F /* npshannon.h */, A7DA20B0113FECD400BF472F /* nseqs.h */, A7DA20B2113FECD400BF472F /* onegapdist.h */, A7DA20B3113FECD400BF472F /* onegapignore.h */, A72B3A7B118B4D1B004B9F8D /* phylodiversity.h */, A72B3A7C118B4D1B004B9F8D /* phylodiversity.cpp */, A7DA20BE113FECD400BF472F /* parsimony.cpp */, A7DA20BF113FECD400BF472F /* parsimony.h */, A7DA20CE113FECD400BF472F /* qstat.cpp */, A7DA20CF113FECD400BF472F /* qstat.h */, A7DA2104113FECD400BF472F /* shannon.cpp */, A7DA2105113FECD400BF472F /* shannon.h */, A7DA2106113FECD400BF472F /* sharedace.cpp */, A7DA2107113FECD400BF472F /* sharedace.h */, A7DA2108113FECD400BF472F /* sharedanderberg.h */, A7DA2109113FECD400BF472F /* sharedanderbergs.cpp */, A7DA210A113FECD400BF472F /* sharedanderbergs.h */, A7DA210B113FECD400BF472F /* sharedbraycurtis.cpp */, A7DA210C113FECD400BF472F /* sharedbraycurtis.h */, A7DA210D113FECD400BF472F /* sharedchao1.cpp */, A7DA210E113FECD400BF472F /* sharedchao1.h */, A7DA2111113FECD400BF472F /* sharedjabund.cpp */, A7DA2112113FECD400BF472F /* sharedjabund.h */, A7DA2113113FECD400BF472F /* sharedjackknife.cpp */, A7DA2114113FECD400BF472F /* sharedjackknife.h */, A7DA2115113FECD400BF472F /* sharedjclass.cpp */, A7DA2116113FECD400BF472F /* sharedjclass.h */, A7DA2117113FECD400BF472F /* sharedjest.cpp */, A7DA2118113FECD400BF472F /* sharedjest.h */, A7DA2119113FECD400BF472F /* sharedkstest.cpp */, A7DA211A113FECD400BF472F /* sharedkstest.h */, A7DA211B113FECD400BF472F /* sharedkulczynski.cpp */, A7DA211C113FECD400BF472F /* sharedkulczynski.h */, A7DA211D113FECD400BF472F /* sharedkulczynskicody.cpp */, A7DA211E113FECD400BF472F /* sharedkulczynskicody.h */, A7DA211F113FECD400BF472F /* sharedlennon.cpp */, A7DA2120113FECD400BF472F /* sharedlennon.h */, A7DA2123113FECD400BF472F /* sharedmarczewski.cpp */, A7DA2124113FECD400BF472F /* sharedmarczewski.h */, A7DA2125113FECD400BF472F /* sharedmorisitahorn.cpp */, A7DA2126113FECD400BF472F /* sharedmorisitahorn.h */, A7DA2127113FECD400BF472F /* sharednseqs.h */, A7DA2128113FECD400BF472F /* sharedochiai.cpp */, A7DA2129113FECD400BF472F /* sharedochiai.h */, A7DA2130113FECD400BF472F /* sharedsobs.cpp */, A7DA2131113FECD400BF472F /* sharedsobs.h */, A7DA2132113FECD400BF472F /* sharedsobscollectsummary.cpp */, A7DA2133113FECD400BF472F /* sharedsobscollectsummary.h */, A7DA2134113FECD400BF472F /* sharedsorabund.cpp */, A7DA2135113FECD400BF472F /* sharedsorabund.h */, A7DA2136113FECD400BF472F /* sharedsorclass.cpp */, A7DA2137113FECD400BF472F /* sharedsorclass.h */, A7DA2138113FECD400BF472F /* sharedsorest.cpp */, A7DA2139113FECD400BF472F /* sharedsorest.h */, A7DA213A113FECD400BF472F /* sharedthetan.cpp */, A7DA213B113FECD400BF472F /* sharedthetan.h */, A7DA213C113FECD400BF472F /* sharedthetayc.cpp */, A7DA213D113FECD400BF472F /* sharedthetayc.h */, A7DA2140113FECD400BF472F /* shen.cpp */, A7DA2141113FECD400BF472F /* shen.h */, A7DA2142113FECD400BF472F /* simpson.cpp */, A7DA2143113FECD400BF472F /* simpson.h */, A7DA2149113FECD400BF472F /* sobs.h */, A7DA214A113FECD400BF472F /* solow.cpp */, A7DA214B113FECD400BF472F /* solow.h */, A7DA2160113FECD400BF472F /* treecalculator.h */, A7DA216D113FECD400BF472F /* unweighted.cpp */, A7DA216E113FECD400BF472F /* unweighted.h */, A7DA216F113FECD400BF472F /* uvest.cpp */, A7DA2170113FECD400BF472F /* uvest.h */, A7DA2179113FECD400BF472F /* weighted.cpp */, A7DA217A113FECD400BF472F /* weighted.h */, A7DA217B113FECD400BF472F /* whittaker.cpp */, A7DA217C113FECD400BF472F /* whittaker.h */, ); name = calculators; sourceTree = ""; }; A7CB593E11402F110010EB83 /* commands */ = { isa = PBXGroup; children = ( A7DA202B113FECD400BF472F /* command.hpp */, A7DA1FEF113FECD400BF472F /* aligncommand.h */, A7DA1FEE113FECD400BF472F /* aligncommand.cpp */, A7DA1FFE113FECD400BF472F /* binsequencecommand.h */, A7DA1FFD113FECD400BF472F /* binsequencecommand.cpp */, A7DA2007113FECD400BF472F /* bootstrapsharedcommand.cpp */, A7DA2008113FECD400BF472F /* bootstrapsharedcommand.h */, A7D216061199C47F00F13F13 /* catchallcommand.h */, A7D216071199C47F00F13F13 /* catchallcommand.cpp */, A7DA2017113FECD400BF472F /* chimeraseqscommand.cpp */, A78434881162224F00100BE0 /* chimeraccodecommand.h */, A7DA2018113FECD400BF472F /* chimeraseqscommand.h */, A7825502116519F70002E2DD /* chimerabellerophoncommand.h */, A7825503116519F70002E2DD /* chimerabellerophoncommand.cpp */, A747E79B1163442A00FB9042 /* chimeracheckcommand.h */, A747E79C1163442A00FB9042 /* chimeracheckcommand.cpp */, A78434891162224F00100BE0 /* chimeraccodecommand.cpp */, A78254461164D7790002E2DD /* chimerapintailcommand.h */, A78254471164D7790002E2DD /* chimerapintailcommand.cpp */, A747E81C116365E000FB9042 /* chimeraslayercommand.h */, A747E81D116365E000FB9042 /* chimeraslayercommand.cpp */, A73953DA11987ED100B0B160 /* chopseqscommand.h */, A73953DB11987ED100B0B160 /* chopseqscommand.cpp */, A7DA201E113FECD400BF472F /* classifyseqscommand.h */, A7DA201D113FECD400BF472F /* classifyseqscommand.cpp */, A7BBDA7B11B5694E006E6551 /* classifyotucommand.h */, A7BBDA7C11B5694E006E6551 /* classifyotucommand.cpp */, A7D215C811996C6E00F13F13 /* clearcutcommand.h */, A7D215C911996C6E00F13F13 /* clearcutcommand.cpp */, A7DA2021113FECD400BF472F /* clustercommand.cpp */, A7DA2022113FECD400BF472F /* clustercommand.h */, A71D924311AEB42400D00CBC /* clustersplitcommand.h */, A71D924211AEB42400D00CBC /* clustersplitcommand.cpp */, A7DA2025113FECD400BF472F /* collectcommand.cpp */, A7DA2026113FECD400BF472F /* collectcommand.h */, A7DA2029113FECD400BF472F /* collectsharedcommand.cpp */, A7DA202A113FECD400BF472F /* collectsharedcommand.h */, A7DA2031113FECD400BF472F /* consensuscommand.cpp */, A7DA2032113FECD400BF472F /* consensuscommand.h */, A7DA203A113FECD400BF472F /* deconvolutecommand.cpp */, A7DA203B113FECD400BF472F /* deconvolutecommand.h */, A7DA203E113FECD400BF472F /* distancecommand.cpp */, A7DA203F113FECD400BF472F /* distancecommand.h */, A7DA204F113FECD400BF472F /* filterseqscommand.cpp */, A7DA2050113FECD400BF472F /* filterseqscommand.h */, A7DA205A113FECD400BF472F /* getgroupcommand.cpp */, A7DA205B113FECD400BF472F /* getgroupcommand.h */, A7DA205C113FECD400BF472F /* getlabelcommand.cpp */, A7DA205D113FECD400BF472F /* getlabelcommand.h */, A7DA205F113FECD400BF472F /* getlistcountcommand.h */, A7DA205E113FECD400BF472F /* getlistcountcommand.cpp */, A7DA2061113FECD400BF472F /* getoturepcommand.h */, A7DA2060113FECD400BF472F /* getoturepcommand.cpp */, A7DA2062113FECD400BF472F /* getrabundcommand.cpp */, A7DA2063113FECD400BF472F /* getrabundcommand.h */, A7DA2064113FECD400BF472F /* getsabundcommand.cpp */, A7DA2065113FECD400BF472F /* getsabundcommand.h */, A7DA2067113FECD400BF472F /* getseqscommand.h */, A7DA2066113FECD400BF472F /* getseqscommand.cpp */, A7DA2068113FECD400BF472F /* getsharedotucommand.cpp */, A7DA2069113FECD400BF472F /* getsharedotucommand.h */, A7DA2074113FECD400BF472F /* hclustercommand.cpp */, A7DA2075113FECD400BF472F /* hclustercommand.h */, A7DA2078113FECD400BF472F /* heatmapcommand.cpp */, A7DA2079113FECD400BF472F /* heatmapcommand.h */, A7DA207C113FECD400BF472F /* heatmapsimcommand.cpp */, A7DA207D113FECD400BF472F /* heatmapsimcommand.h */, A7DA207E113FECD400BF472F /* helpcommand.cpp */, A7DA207F113FECD400BF472F /* helpcommand.h */, A7DA208D113FECD400BF472F /* libshuffcommand.cpp */, A7DA208E113FECD400BF472F /* libshuffcommand.h */, A7DA2090113FECD400BF472F /* listseqscommand.h */, A7DA208F113FECD400BF472F /* listseqscommand.cpp */, A703FE931194645F002C397E /* makegroupcommand.h */, A703FE941194645F002C397E /* makegroupcommand.cpp */, A7DA2098113FECD400BF472F /* matrixoutputcommand.cpp */, A7DA2099113FECD400BF472F /* matrixoutputcommand.h */, A7DA209A113FECD400BF472F /* mergefilecommand.cpp */, A7DA209B113FECD400BF472F /* mergefilecommand.h */, A7DA209C113FECD400BF472F /* mgclustercommand.cpp */, A7DA209D113FECD400BF472F /* mgclustercommand.h */, A7DA20AC113FECD400BF472F /* nocommands.cpp */, A7DA20AD113FECD400BF472F /* nocommands.h */, A7DA20B8113FECD400BF472F /* otuhierarchycommand.cpp */, A7DA20B9113FECD400BF472F /* otuhierarchycommand.h */, A7DA20BC113FECD400BF472F /* parselistscommand.cpp */, A7DA20BD113FECD400BF472F /* parselistscommand.h */, A7E8338B115BBDAA00739EC4 /* parsesffcommand.cpp */, A7E8338C115BBDAA00739EC4 /* parsesffcommand.h */, A7DA20C0113FECD400BF472F /* parsimonycommand.cpp */, A7DA20C1113FECD400BF472F /* parsimonycommand.h */, A7DA20C3113FECD400BF472F /* pcacommand.h */, A7DA20C2113FECD400BF472F /* pcacommand.cpp */, A72B3A62118B37FD004B9F8D /* phylodiversitycommand.h */, A72B3A63118B37FD004B9F8D /* phylodiversitycommand.cpp */, A7DA20C7113FECD400BF472F /* phylotypecommand.h */, A7DA20C6113FECD400BF472F /* phylotypecommand.cpp */, A7DA20CB113FECD400BF472F /* preclustercommand.h */, A7DA20CA113FECD400BF472F /* preclustercommand.cpp */, A7DA20D1113FECD400BF472F /* quitcommand.h */, A7DA20D0113FECD400BF472F /* quitcommand.cpp */, A7DA20DB113FECD400BF472F /* rarefactcommand.h */, A7DA20DA113FECD400BF472F /* rarefactcommand.cpp */, A7DA20DE113FECD400BF472F /* rarefactsharedcommand.h */, A7DA20DD113FECD400BF472F /* rarefactsharedcommand.cpp */, A7DA20E6113FECD400BF472F /* readdistcommand.h */, A7DA20E5113FECD400BF472F /* readdistcommand.cpp */, A7DA20EB113FECD400BF472F /* readotucommand.h */, A7DA20EA113FECD400BF472F /* readotucommand.cpp */, A7DA20F1113FECD400BF472F /* readtreecommand.h */, A7DA20F0113FECD400BF472F /* readtreecommand.cpp */, A7DA20F3113FECD400BF472F /* removeseqscommand.h */, A7DA20F2113FECD400BF472F /* removeseqscommand.cpp */, A7DA20F5113FECD400BF472F /* reversecommand.h */, A7DA20F4113FECD400BF472F /* reversecommand.cpp */, A7DA20F9113FECD400BF472F /* screenseqscommand.h */, A7DA20F8113FECD400BF472F /* screenseqscommand.cpp */, A7DA20FB113FECD400BF472F /* secondarystructurecommand.h */, A7DA20FA113FECD400BF472F /* secondarystructurecommand.cpp */, A7DA20FD113FECD400BF472F /* seqsummarycommand.h */, A7DA20FC113FECD400BF472F /* seqsummarycommand.cpp */, A7DA2103113FECD400BF472F /* setdircommand.h */, A7DA2102113FECD400BF472F /* setdircommand.cpp */, A76C4A1011876BAF0009460B /* setlogfilecommand.h */, A76C4A1111876BAF0009460B /* setlogfilecommand.cpp */, A7DA2110113FECD400BF472F /* sharedcommand.h */, A7DA210F113FECD400BF472F /* sharedcommand.cpp */, A71D924511AEB42400D00CBC /* splitabundcommand.h */, A71D924411AEB42400D00CBC /* splitabundcommand.cpp */, A7DA2155113FECD400BF472F /* summarycommand.h */, A7DA2154113FECD400BF472F /* summarycommand.cpp */, A7DA2159113FECD400BF472F /* summarysharedcommand.h */, A7DA2158113FECD400BF472F /* summarysharedcommand.cpp */, A7DA215B113FECD400BF472F /* systemcommand.h */, A7DA215A113FECD400BF472F /* systemcommand.cpp */, A7DA2162113FECD400BF472F /* treegroupscommand.h */, A7DA2161113FECD400BF472F /* treegroupscommand.cpp */, A7DA2168113FECD400BF472F /* trimseqscommand.h */, A7DA2167113FECD400BF472F /* trimseqscommand.cpp */, A7DA216A113FECD400BF472F /* unifracunweightedcommand.h */, A7DA2169113FECD400BF472F /* unifracunweightedcommand.cpp */, A7DA216C113FECD400BF472F /* unifracweightedcommand.h */, A7DA216B113FECD400BF472F /* unifracweightedcommand.cpp */, A7DA2178113FECD400BF472F /* venncommand.h */, A7DA2177113FECD400BF472F /* venncommand.cpp */, ); name = commands; sourceTree = ""; }; A7CB594211402F430010EB83 /* containers */ = { isa = PBXGroup; children = ( A7DA1FF3113FECD400BF472F /* alignmentcell.hpp */, A7DA1FF2113FECD400BF472F /* alignmentcell.cpp */, A7DA1FF4113FECD400BF472F /* alignmentdb.cpp */, A7DA1FF5113FECD400BF472F /* alignmentdb.h */, A7DA2001113FECD400BF472F /* blastdb.cpp */, A7DA2002113FECD400BF472F /* blastdb.hpp */, A7DA2035113FECD400BF472F /* database.cpp */, A7DA2036113FECD400BF472F /* database.hpp */, A7DA2037113FECD400BF472F /* datavector.hpp */, A7DA2040113FECD400BF472F /* distancedb.cpp */, A7DA2041113FECD400BF472F /* distancedb.hpp */, A7DA204A113FECD400BF472F /* fastamap.cpp */, A7DA204B113FECD400BF472F /* fastamap.h */, A7DA2056113FECD400BF472F /* fullmatrix.cpp */, A7DA2057113FECD400BF472F /* fullmatrix.h */, A7DA2070113FECD400BF472F /* groupmap.cpp */, A7DA2071113FECD400BF472F /* groupmap.h */, A7DA2085113FECD400BF472F /* kmer.cpp */, A7DA2086113FECD400BF472F /* kmer.hpp */, A7DA2087113FECD400BF472F /* kmerdb.cpp */, A7DA2088113FECD400BF472F /* kmerdb.hpp */, A7DA2091113FECD400BF472F /* listvector.cpp */, A7DA2092113FECD400BF472F /* listvector.hpp */, A7DA20A2113FECD400BF472F /* nameassignment.cpp */, A7DA20A3113FECD400BF472F /* nameassignment.hpp */, A7DA20B6113FECD400BF472F /* ordervector.cpp */, A7DA20B7113FECD400BF472F /* ordervector.hpp */, A7DA20D2113FECD400BF472F /* rabundvector.cpp */, A7DA20D3113FECD400BF472F /* rabundvector.hpp */, A7DA20F6113FECD400BF472F /* sabundvector.cpp */, A7DA20F7113FECD400BF472F /* sabundvector.hpp */, A7DA20FE113FECD400BF472F /* sequence.cpp */, A7DA20FF113FECD400BF472F /* sequence.hpp */, A7DA2100113FECD400BF472F /* sequencedb.cpp */, A7DA2101113FECD400BF472F /* sequencedb.h */, A7DA2121113FECD400BF472F /* sharedlistvector.cpp */, A7DA2122113FECD400BF472F /* sharedlistvector.h */, A7DA212A113FECD400BF472F /* sharedordervector.cpp */, A7DA212B113FECD400BF472F /* sharedordervector.h */, A7DA212C113FECD400BF472F /* sharedrabundvector.cpp */, A7DA212D113FECD400BF472F /* sharedrabundvector.h */, A7DA212E113FECD400BF472F /* sharedsabundvector.cpp */, A7DA212F113FECD400BF472F /* sharedsabundvector.h */, A7DA214C113FECD400BF472F /* sparsematrix.cpp */, A7DA214D113FECD400BF472F /* sparsematrix.hpp */, A7DA214E113FECD400BF472F /* suffixdb.cpp */, A7DA214F113FECD400BF472F /* suffixdb.hpp */, A7DA2150113FECD400BF472F /* suffixnodes.cpp */, A7DA2151113FECD400BF472F /* suffixnodes.hpp */, A7DA2152113FECD400BF472F /* suffixtree.cpp */, A7DA2153113FECD400BF472F /* suffixtree.hpp */, A7DA215E113FECD400BF472F /* tree.cpp */, A7DA215F113FECD400BF472F /* tree.h */, A7DA2163113FECD400BF472F /* treemap.cpp */, A7DA2164113FECD400BF472F /* treemap.h */, A7DA2165113FECD400BF472F /* treenode.cpp */, A7DA2166113FECD400BF472F /* treenode.h */, ); name = containers; sourceTree = ""; }; A7CB594511402F6E0010EB83 /* classifers */ = { isa = PBXGroup; children = ( A7DA201B113FECD400BF472F /* classify.cpp */, A7DA201C113FECD400BF472F /* classify.h */, A7DA1FF7113FECD400BF472F /* bayesian.cpp */, A7DA1FF8113FECD400BF472F /* bayesian.h */, A7DA2089113FECD400BF472F /* knn.cpp */, A7DA208A113FECD400BF472F /* knn.h */, A7DA20C4113FECD400BF472F /* phylotree.cpp */, A7DA20C5113FECD400BF472F /* phylotree.h */, A76AAD02117F322B003D8DA1 /* phylosummary.h */, A76AAD03117F322B003D8DA1 /* phylosummary.cpp */, A7DA215C113FECD400BF472F /* taxonomyequalizer.cpp */, A7DA215D113FECD400BF472F /* taxonomyequalizer.h */, ); name = classifers; sourceTree = ""; }; A7CB594A11402FB40010EB83 /* chimeras */ = { isa = PBXGroup; children = ( A7DA2011113FECD400BF472F /* chimera.cpp */, A7DA2012113FECD400BF472F /* chimera.h */, A7DA1FF9113FECD400BF472F /* bellerophon.cpp */, A7DA1FFA113FECD400BF472F /* bellerophon.h */, A7DA200D113FECD400BF472F /* ccode.cpp */, A7DA200E113FECD400BF472F /* ccode.h */, A7DA2013113FECD400BF472F /* chimeracheckrdp.cpp */, A7DA2014113FECD400BF472F /* chimeracheckrdp.h */, A7DA2015113FECD400BF472F /* chimerarealigner.cpp */, A7DA2016113FECD400BF472F /* chimerarealigner.h */, A7DA2019113FECD400BF472F /* chimeraslayer.cpp */, A7DA201A113FECD400BF472F /* chimeraslayer.h */, A7DA2038113FECD400BF472F /* decalc.cpp */, A7DA2039113FECD400BF472F /* decalc.h */, A7DA2095113FECD400BF472F /* maligner.cpp */, A7DA2096113FECD400BF472F /* maligner.h */, A7DA20C8113FECD400BF472F /* pintail.cpp */, A7DA20C9113FECD400BF472F /* pintail.h */, A7DA2145113FECD400BF472F /* slayer.cpp */, A7DA2146113FECD400BF472F /* slayer.h */, ); name = chimeras; sourceTree = ""; }; A7CB5953114033220010EB83 /* read */ = { isa = PBXGroup; children = ( A7DA2051113FECD400BF472F /* formatcolumn.cpp */, A7DA2052113FECD400BF472F /* formatcolumn.h */, A7DA2053113FECD400BF472F /* formatmatrix.h */, A7DA2054113FECD400BF472F /* formatphylip.cpp */, A7DA2055113FECD400BF472F /* formatphylip.h */, A7DA20DF113FECD400BF472F /* readblast.cpp */, A7DA20E0113FECD400BF472F /* readblast.h */, A7DA20E1113FECD400BF472F /* readcluster.cpp */, A7DA20E2113FECD400BF472F /* readcluster.h */, A7DA20E3113FECD400BF472F /* readcolumn.cpp */, A7DA20E4113FECD400BF472F /* readcolumn.h */, A7DA20E7113FECD400BF472F /* readmatrix.hpp */, A7DA20E8113FECD400BF472F /* readotu.cpp */, A7DA20E9113FECD400BF472F /* readotu.h */, A7DA20EC113FECD400BF472F /* readphylip.cpp */, A7DA20ED113FECD400BF472F /* readphylip.h */, A7DA20EE113FECD400BF472F /* readtree.cpp */, A7DA20EF113FECD400BF472F /* readtree.h */, A71D924711AEB42400D00CBC /* splitmatrix.h */, A71D924611AEB42400D00CBC /* splitmatrix.cpp */, ); name = read; sourceTree = ""; }; /* End PBXGroup section */ /* Begin PBXLegacyTarget section */ D28A88AD04BDD90700651E21 /* mothur */ = { isa = PBXLegacyTarget; buildArgumentsString = "$(ACTION)"; buildConfigurationList = 1DEB918F08733D9F0010E9CD /* Build configuration list for PBXLegacyTarget "mothur" */; buildPhases = ( ); buildToolPath = /usr/bin/make; dependencies = ( ); name = mothur; passBuildSettingsInEnvironment = 1; productName = mothur; }; /* End PBXLegacyTarget section */ /* Begin PBXProject section */ 08FB7793FE84155DC02AAC07 /* Project object */ = { isa = PBXProject; attributes = { BuildIndependentTargetsInParallel = YES; }; buildConfigurationList = 1DEB919308733D9F0010E9CD /* Build configuration list for PBXProject "Mothur" */; compatibilityVersion = "Xcode 3.0"; hasScannedForEncodings = 1; mainGroup = 08FB7794FE84155DC02AAC07 /* mothur */; projectDirPath = ""; projectRoot = ""; targets = ( D28A88AD04BDD90700651E21 /* mothur */, ); }; /* End PBXProject section */ /* Begin XCBuildConfiguration section */ 1DEB919108733D9F0010E9CD /* Release */ = { isa = XCBuildConfiguration; buildSettings = { COPY_PHASE_STRIP = YES; GCC_ENABLE_FIX_AND_CONTINUE = NO; OTHER_CFLAGS = ""; OTHER_LDFLAGS = ""; PRODUCT_NAME = mothur; ZERO_LINK = NO; }; name = Release; }; 1DEB919508733D9F0010E9CD /* Release */ = { isa = XCBuildConfiguration; buildSettings = { ARCHS = ( ppc, i386, ); GCC_WARN_ABOUT_RETURN_TYPE = YES; GCC_WARN_UNUSED_VARIABLE = YES; LINK_WITH_STANDARD_LIBRARIES = YES; PREBINDING = NO; SDKROOT = "$(DEVELOPER_SDK_DIR)/MacOSX10.6.sdk"; }; name = Release; }; /* End XCBuildConfiguration section */ /* Begin XCConfigurationList section */ 1DEB918F08733D9F0010E9CD /* Build configuration list for PBXLegacyTarget "mothur" */ = { isa = XCConfigurationList; buildConfigurations = ( 1DEB919108733D9F0010E9CD /* Release */, ); defaultConfigurationIsVisible = 0; defaultConfigurationName = Release; }; 1DEB919308733D9F0010E9CD /* Build configuration list for PBXProject "Mothur" */ = { isa = XCConfigurationList; buildConfigurations = ( 1DEB919508733D9F0010E9CD /* Release */, ); defaultConfigurationIsVisible = 0; defaultConfigurationName = Release; }; /* End XCConfigurationList section */ }; rootObject = 08FB7793FE84155DC02AAC07 /* Project object */; }