added oligos class. added check orient parameter to trim.flows, sffinfo, fastq.info...
authorSarah Westcott <mothur.westcott@gmail.com>
Wed, 9 Apr 2014 13:13:12 +0000 (09:13 -0400)
committerSarah Westcott <mothur.westcott@gmail.com>
Wed, 9 Apr 2014 13:13:12 +0000 (09:13 -0400)
commitfefd5ee1517abd3bc38b469cb2dffc85a1571c7e
tree283086dc195ef32adda85326380e855d917bc02d
parentaca78ed4a47dff8672ea8fd93cef0dfbaf0f7495
added oligos class. added check orient parameter to trim.flows, sffinfo, fastq.info, and make.contigs.
27 files changed:
Mothur.xcodeproj/project.pbxproj
aligncommand.cpp
getmimarkspackagecommand.cpp
getmimarkspackagecommand.h
makecontigscommand.cpp
makecontigscommand.h
mothur.h
mothurout.cpp
mothurout.h
oligos.cpp [new file with mode: 0644]
oligos.h [new file with mode: 0644]
parsefastaqcommand.cpp
parsefastaqcommand.h
pcrseqscommand.h
prcseqscommand.cpp
qualityscores.cpp
qualityscores.h
sffinfocommand.cpp
sffinfocommand.h
sracommand.cpp
sracommand.h
trimflowscommand.cpp
trimflowscommand.h
trimoligos.cpp
trimoligos.h
trimseqscommand.cpp
trimseqscommand.h