| 2014-04-09 |
Sarah Westcott | added oligos class. added check orient parameter to... |
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| 2014-03-25 |
Sarah Westcott | changed int to pid_t type in fork(). roughed in get... |
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| 2014-03-25 |
Sarah Westcott | added mothurgetpid function. fixed bug with align.seqs... |
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| 2014-01-09 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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| 2014-01-09 |
Sarah Westcott | added Jensen-Shannon calc. working on get.communitytype... |
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| 2013-10-08 |
Sarah Westcott | added otulabels to heatmap.bin. made OTUlabels “smarter... |
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| 2013-07-17 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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| 2013-06-13 |
Sarah Westcott | added make.lefse command. fixed bug in make.contigs... |
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| 2013-05-23 |
Abu Zaher Md. Faridee | Merge branch 'master' into dev-ml |
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| 2013-05-17 |
Sarah Westcott | added modify names parameter to set.dir |
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| 2013-04-22 |
SarahsWork | added flag to count table read so that commands that... |
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| 2013-04-03 |
SarahsWork | added count file to get.sabund and get.rabund commands... |
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| 2013-04-01 |
SarahsWork | added end of file character to some type type reads... |
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| 2013-03-18 |
SarahsWork | Merge remote-tracking branch 'origin' |
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| 2013-03-18 |
SarahsWork | working on dereplicate=t issue in chimera.slayer and... |
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| 2013-03-13 |
Pat Schloss | Fixed a bug in the count output of seq.error when using... |
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| 2013-03-12 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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| 2013-03-06 |
SarahsWork | added pacbio parameter to fastq.info. fixed issue with... |
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| 2013-03-05 |
SarahsWork | Merge remote-tracking branch 'origin' |
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| 2013-03-05 |
SarahsWork | working on chimera.uchime change for dereplicate=t... |
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| 2013-03-02 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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| 2013-02-27 |
SarahsWork | mods to resolve some misc warnings. added alignPrimer... |
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| 2013-02-07 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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| 2013-01-28 |
Sarah Westcott | added checks to make sure windows processes completed... |
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| 2013-01-03 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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| 2013-01-03 |
Pat Schloss | Changes to seq.error so that an alignment is not necessary |
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| 2012-12-21 |
Sarah Westcott | added ignore option to oligos files for make.contigs... |
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| 2012-12-21 |
Sarah Westcott | trim.seqs filename |
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| 2012-12-21 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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| 2012-12-21 |
Sarah Westcott | working on make.contigs. fixed trim.seqs filename issue |
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| 2012-12-13 |
Sarah Westcott | Merge remote-tracking branch 'origin/master' |
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| 2012-12-13 |
Sarah Westcott | fixed bug in phylo.diversity rooting. added filename... |
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| 2012-10-22 |
Sarah Westcott | Merge remote-tracking branch 'origin/master' |
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| 2012-10-22 |
Sarah Westcott | added sets to amova and homova commands. added oligos... |
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| 2012-10-22 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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| 2012-10-09 |
Sarah Westcott | added dups parameter to chimera.uchime. working on... |
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| 2012-09-25 |
Sarah Westcott | added count file to get.oturep, pre.cluster, screen... |
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| 2012-09-14 |
Sarah Westcott | added count file to trim.seqs, get.groups, get.lineage... |
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| 2012-09-12 |
Sarah Westcott | optimizing classify.seqs calculating of template probab... |
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| 2012-09-07 |
Sarah Westcott | major change to the tree class to use the count table... |
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| 2012-08-21 |
Sarah Westcott | added oligos, pdiffs, bdiffs, ldiffs, sdiffs, tiffs... |
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| 2012-08-06 |
Sarah Westcott | changes while testing 1.27 |
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| 2012-08-01 |
Sarah Westcott | paralellized chop.seqs |
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| 2012-07-30 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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| 2012-07-27 |
Sarah Westcott | added sparseDistanceMatrix class. Modified cluster... |
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| 2012-07-11 |
Sarah Westcott | Merge remote-tracking branch 'origin/master' |
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| 2012-07-11 |
Sarah Westcott | added debug statements to trim.seqs |
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| 2012-06-19 |
Sarah Westcott | added load.logfile command. changed summary.single... |
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| 2012-06-12 |
Sarah Westcott | changed reading of name file to use buffered reads... |
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| 2012-06-07 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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| 2012-06-05 |
Sarah Westcott | added forward and reverse barcodes to trim.seqs to... |
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| 2012-05-02 |
Sarah Westcott | Revert to previous commit |
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| 2012-05-02 |
Sarah Westcott | moved mothur's source into a folder to make grabbing... |
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| 2012-05-01 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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| 2012-04-11 |
Sarah Westcott | fixed bug with windows version of trim.seqs when run... |
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| 2012-04-11 |
Sarah Westcott | added subsample and consensus parameters to unifrac... |
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| 2012-04-04 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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| 2012-03-27 |
Sarah Westcott | initialized numLinkers and numSpacers in trim.seqs... |
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| 2012-03-27 |
Sarah Westcott | added pcr.seqs command. fixed bug in rarefacftion.singl... |
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| 2012-03-13 |
Sarah Westcott | added unix to ifdefs. minor changes while testing 1... |
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| 2012-03-06 |
Sarah Westcott | changed sffinfo flow default to true. fixed bug in... |
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| 2012-02-24 |
Sarah Westcott | added linker and spacer to trim.flows |
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| 2012-02-24 |
Sarah Westcott | paralellized trim.seqs for windows. fixed bug in trim... |
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| 2012-02-20 |
Sarah Westcott | removed unused copy constructors and comments within... |
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| 2012-01-19 |
westcott | fixed bug with shhh.flow from file path name in write... |
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| 2012-01-04 |
westcott | 1.23.0 |
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| 2011-12-23 |
westcott | added qvalues to metastats. fixed bug with chimera... |
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| 2011-12-06 |
westcott | metastats in progress |
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| 2011-09-13 |
westcott | working on windows paralellization, added trimOligos... |
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| 2011-07-18 |
westcott | changed normalize.shared and sub.sample commands to... |
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| 2011-07-15 |
westcott | rewrote metastats command in c++, added mothurRemove... |
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| 2011-06-28 |
westcott | small bug with trimming of quality scores over a window... |
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| 2011-06-14 |
westcott | working on current change |
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| 2011-06-14 |
westcott | working on current change |
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| 2011-05-27 |
westcott | captured stdout from system command, fixed bug in trim... |
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| 2011-05-24 |
westcott | paralellized seq.error and dist.shared added some error... |
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| 2011-05-20 |
westcott | finished adding the names option to trim.seqs |
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| 2011-05-18 |
westcott | added name option to trim.seqs |
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| 2011-05-18 |
westcott | fixed bug with trim.seqs allfiles=t |
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| 2011-05-18 |
westcott | fixed bug with trim.seqs allfiles=t |
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| 2011-05-11 |
westcott | working on citations |
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| 2011-05-10 |
westcott | added citation function to commands |
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| 2011-05-09 |
westcott | 1.19.0 |
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| 2011-05-09 |
westcott | 1.19.0 |
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| 2011-05-04 |
westcott | trim.seqs fix of gobble |
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| 2011-04-06 |
westcott | added getCommandInfoCommand for gui |
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| 2011-04-06 |
westcott | removed read.dist, read.otu, read.tree and globaldata... |
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| 2011-03-30 |
westcott | fixed problem with sffinfo that caused a file mismatch... |
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| 2011-03-22 |
westcott | fixed trim.seqs group counts by adding back in the... |
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| 2011-03-16 |
westcott | added set.current and get.current commands and modified... |
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| 2011-03-07 |
pschloss | fix trim.seqs / qualscores bug |
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| 2011-03-04 |
westcott | worked on trim.seqs - added in the groupfiles for allfi... |
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| 2011-03-04 |
westcott | worked on trim.seqs - added in the groupfiles for allfi... |
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| 2011-03-04 |
westcott | bug fixes |
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| 2011-02-23 |
westcott | fixed bug in unifrac commands with unrooted trees |
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| 2011-02-10 |
pschloss | modified reverse.seqs and qualscores.cpp |
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| 2011-02-09 |
pschloss | mods to trim.seqs |
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| 2011-02-09 |
pschloss | mods to trim.seqs |
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| 2011-02-08 |
westcott | added [ERROR] flag if command aborts |
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| 2011-02-08 |
westcott | added homova command |
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