git.donarmstrong.com Git - mothur.git/history

]> git.donarmstrong.com Git - mothur.git/history - mothur.h

2014-04-09	Sarah Westcott	added oligos class. added check orient parameter to...	blob \| commitdiff \| raw
2014-03-05	Sarah Westcott	added shannonrange calc.	blob \| commitdiff \| raw \| diff to current
2014-02-03	Sarah Westcott	added mergesfffiles command. added current directories...	blob \| commitdiff \| raw \| diff to current
2013-07-17	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2013-06-24	Sarah Westcott	Merge remote-tracking branch 'origin'	blob \| commitdiff \| raw \| diff to current
2013-06-24	Sarah Westcott	added kruskal.wallis command. added worked on make...	blob \| commitdiff \| raw \| diff to current
2013-06-13	Sarah Westcott	added make.lefse command. fixed bug in make.contigs...	blob \| commitdiff \| raw \| diff to current
2013-02-18	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2013-02-11	Sarah Westcott	added ':' name check to seq. error and fastq.info....	blob \| commitdiff \| raw \| diff to current
2012-10-22	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-08-13	Sarah Westcott	added count file to chimera.uchime. found issue with...	blob \| commitdiff \| raw \| diff to current
2012-07-30	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-07-27	Sarah Westcott	added sparseDistanceMatrix class. Modified cluster...	blob \| commitdiff \| raw \| diff to current
2012-05-02	Sarah Westcott	Revert to previous commit	blob \| commitdiff \| raw \| diff to current
2012-05-02	Sarah Westcott	moved mothur's source into a folder to make grabbing...	blob \| commitdiff \| raw
2012-04-04	Pat Schloss	Merge remote-tracking branch 'mothur/master'	blob \| commitdiff \| raw \| diff to current
2012-04-03	Sarah Westcott	fixed bug in corr.axes so that it now uses the shared...	blob \| commitdiff \| raw \| diff to current
2012-03-13	Sarah Westcott	added unix to ifdefs. minor changes while testing 1...	blob \| commitdiff \| raw \| diff to current
2012-03-02	Sarah Westcott	added cooccurence command	blob \| commitdiff \| raw \| diff to current
2012-01-19	westcott	fixed bug with shhh.flow from file path name in write...	blob \| commitdiff \| raw \| diff to current
2011-12-23	westcott	added qvalues to metastats. fixed bug with chimera...	blob \| commitdiff \| raw \| diff to current
2011-11-11	westcott	fixed bug with trim.flows that was adding flow files...	blob \| commitdiff \| raw \| diff to current
2011-08-03	westcott	added paralellization for windows to dist.seqs and...	blob \| commitdiff \| raw \| diff to current
2011-04-18	westcott	modified chimera.slayer template=self	blob \| commitdiff \| raw \| diff to current
2011-03-03	pschloss	modified reportfile class	blob \| commitdiff \| raw \| diff to current
2011-02-15	pschloss	mods to seq.errror	blob \| commitdiff \| raw \| diff to current
2011-02-09	westcott	added mantel command	blob \| commitdiff \| raw \| diff to current
2010-12-13	westcott	added summary file to classify.otu	blob \| commitdiff \| raw \| diff to current
2010-11-19	westcott	added indicator command	blob \| commitdiff \| raw \| diff to current
2010-11-08	westcott	changes to dist.seqs and pairwise.seqs and cluster...	blob \| commitdiff \| raw \| diff to current
2010-08-24	westcott	moved utilities out of mothur.h and into mothurOut...	blob \| commitdiff \| raw \| diff to current
2010-08-23	westcott	filter.seqs bug change	blob \| commitdiff \| raw \| diff to current
2010-08-19	westcott	changed how we break up the files on parallelized comma...	blob \| commitdiff \| raw \| diff to current
2010-08-19	westcott	modified calculators to use doubles, added numotu and...	blob \| commitdiff \| raw \| diff to current
2010-08-06	westcott	added versioning info to all shortcut files mothur...	blob \| commitdiff \| raw \| diff to current
2010-08-03	westcott	modified the engine to extract the path of mothur execu...	blob \| commitdiff \| raw \| diff to current
2010-07-14	westcott	started work on sffinfo command. fixed bug across...	blob \| commitdiff \| raw \| diff to current
2010-07-06	westcott	trim.seqs couts	blob \| commitdiff \| raw \| diff to current
2010-06-30	westcott	modified trim.seqs to split by primer name if primer...	blob \| commitdiff \| raw \| diff to current
2010-06-28	westcott	added groups option to get.oturep command	blob \| commitdiff \| raw \| diff to current
2010-06-24	westcott	created blank accnos in chimera commands if no seqs...	blob \| commitdiff \| raw \| diff to current
2010-06-15	westcott	changed how we count sequences in a fastafile to allow...	blob \| commitdiff \| raw \| diff to current
2010-05-28	westcott	changed hard parameter in cluster commands	blob \| commitdiff \| raw \| diff to current
2010-05-14	westcott	1.10.0	blob \| commitdiff \| raw \| diff to current
2010-05-04	westcott	enabled ~	blob \| commitdiff \| raw \| diff to current
2010-04-29	westcott	paralellized screen.seqs and added mpi code to it....	blob \| commitdiff \| raw \| diff to current
2010-04-14	westcott	some changes while testing 1.9	blob \| commitdiff \| raw \| diff to current
2010-04-07	westcott	added MPI code, broke up chimera.seqs into 5 separated...	blob \| commitdiff \| raw \| diff to current
2010-03-11	westcott	testing mpi	blob \| commitdiff \| raw \| diff to current
2010-03-04	westcott	changes to filter.seqs	blob \| commitdiff \| raw \| diff to current
2010-03-01	westcott	adding mothurout.h and .cpp to repo	blob \| commitdiff \| raw \| diff to current
2010-02-26	westcott	created mothurOut class to handle logfiles	blob \| commitdiff \| raw \| diff to current
2010-02-12	westcott	working on chimeras	blob \| commitdiff \| raw \| diff to current
2010-02-04	pschloss	pat's ../ bug fix	blob \| commitdiff \| raw \| diff to current
2010-02-03	westcott	added name option to read.tree for use in unifrac and...	blob \| commitdiff \| raw \| diff to current
2010-02-02	westcott	fixed bugs for 1.8	blob \| commitdiff \| raw \| diff to current
2010-01-28	westcott	fixed some bugs found while testing 1.8	blob \| commitdiff \| raw \| diff to current
2010-01-27	westcott	added distance search method to classify.seqs	blob \| commitdiff \| raw \| diff to current
2010-01-26	westcott	added set.dir command and modified commands to redirect...	blob \| commitdiff \| raw \| diff to current
2010-01-19	westcott	added warning about average neighbor merges around...	blob \| commitdiff \| raw \| diff to current
2010-01-12	westcott	worked on hcluster. made .single command run using...	blob \| commitdiff \| raw \| diff to current
2009-12-23	westcott	precluster command finished	blob \| commitdiff \| raw \| diff to current
2009-12-09	westcott	added sorted parameter to get.oturep, added error check...	blob \| commitdiff \| raw \| diff to current
2009-12-08	westcott	added list parameter to get.seqs and remove.seqs and...	blob \| commitdiff \| raw \| diff to current
2009-12-02	westcott	modified sequence class to read fasta files with commen...	blob \| commitdiff \| raw \| diff to current
2009-11-13	westcott	finished work on classify.seqs bayesian method and...	blob \| commitdiff \| raw \| diff to current
2009-11-02	westcott	added groups option to read.otu, added qtrim option...	blob \| commitdiff \| raw \| diff to current
2009-10-12	westcott	finished chimeraslayer method and added get.listcount...	blob \| commitdiff \| raw \| diff to current
2009-09-17	westcott	added check for blank files in openInputFile, add check...	blob \| commitdiff \| raw \| diff to current
2009-09-15	westcott	fixed some issues while testing 1.6	blob \| commitdiff \| raw \| diff to current
2009-09-02	westcott	updated pats contact and mothur header info	blob \| commitdiff \| raw \| diff to current
2009-08-05	westcott	bugs fixes while testing for 1.5 release	blob \| commitdiff \| raw \| diff to current
2009-08-03	westcott	bugs for 1.5	blob \| commitdiff \| raw \| diff to current
2009-08-02	westcott	bugs fixes while testing for 1.5 release	blob \| commitdiff \| raw \| diff to current
2009-07-30	pschloss	pat's edits prior to v.1.5	blob \| commitdiff \| raw \| diff to current
2009-07-09	westcott	added getline function to mothur and modified places...	blob \| commitdiff \| raw \| diff to current
2009-07-08	westcott	added stricter compilation requirements and fixed resul...	blob \| commitdiff \| raw \| diff to current
2009-07-08	westcott	added list.seqs command	blob \| commitdiff \| raw \| diff to current
2009-06-29	westcott	fixed bug in bootstrap command that was caused by globa...	blob \| commitdiff \| raw \| diff to current
2009-06-25	westcott	added logfile feature	blob \| commitdiff \| raw \| diff to current
2009-06-21	pschloss	This is v.1.4.0	blob \| commitdiff \| raw \| diff to current
2009-06-08	westcott	dist.seqs can now use n processors, and only outputs...	blob \| commitdiff \| raw \| diff to current
2009-06-04	westcott	fixed some bugs	blob \| commitdiff \| raw \| diff to current
2009-06-04	pschloss	pat's edits of screen.seqs and summary.seqs	blob \| commitdiff \| raw \| diff to current
2009-06-03	pschloss	added screen.seqs command - pds	blob \| commitdiff \| raw \| diff to current
2009-06-02	westcott	added smart distance feature and optimized all commands...	blob \| commitdiff \| raw \| diff to current
2009-05-12	westcott	added distance command and filterseqs	blob \| commitdiff \| raw \| diff to current
2009-05-08	westcott	altered venn command to make use of sharedchao for...	blob \| commitdiff \| raw \| diff to current
2009-05-04	westcott	fixed xp user bug with rarefact commands and cluster...	blob \| commitdiff \| raw \| diff to current
2009-05-04	westcott	added concensus command and updated calcs	blob \| commitdiff \| raw \| diff to current
2009-04-14	westcott	started shared utilities, updates to venn and heatmap...	blob \| commitdiff \| raw \| diff to current
2009-02-19	westcott	added mothur.h and fixed includes in many files	blob \| commitdiff \| raw \| diff to current

Mothur--16S microbiota sequencing software; mirror of main repository with my branches

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