#define Mothur_getmimarkspackagecommand_h
#include "command.hpp"
+#include "oligos.h"
/**************************************************************************************************/
private:
bool abort, requiredonly;
- string oligosfile, groupfile, package, inputfile, file;
+ string oligosfile, groupfile, package, inputfile, file, inputDir;
string outputDir;
vector<string> outputNames, Groups;
- set<string> uniqueNames;
- int readOligos();
int readFile();
};