added MPI code, broke up chimera.seqs into 5 separated commands, added parse.sff...

[mothur.git] / Mothur.xcodeproj / project.pbxproj

diff --git a/Mothur.xcodeproj/project.pbxproj b/Mothur.xcodeproj/project.pbxproj
index f07824e75ecdba89c37fddc31316861b23d958d8..24351a06ea744778b9b463d2ebeec5572b9b5dd2 100644 (file)
--- a/Mothur.xcodeproj/project.pbxproj
+++ b/Mothur.xcodeproj/project.pbxproj
@@ -7,6 +7,16 @@
        objects = {
 
 /* Begin PBXFileReference section */
+               A747E79B1163442A00FB9042 /* chimeracheckcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chimeracheckcommand.h; sourceTree = "<group>"; };
+               A747E79C1163442A00FB9042 /* chimeracheckcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = chimeracheckcommand.cpp; sourceTree = "<group>"; };
+               A747E81C116365E000FB9042 /* chimeraslayercommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chimeraslayercommand.h; sourceTree = "<group>"; };
+               A747E81D116365E000FB9042 /* chimeraslayercommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = chimeraslayercommand.cpp; sourceTree = "<group>"; };
+               A78254461164D7790002E2DD /* chimerapintailcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chimerapintailcommand.h; sourceTree = "<group>"; };
+               A78254471164D7790002E2DD /* chimerapintailcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = chimerapintailcommand.cpp; sourceTree = "<group>"; };
+               A7825502116519F70002E2DD /* chimerabellerophoncommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chimerabellerophoncommand.h; sourceTree = "<group>"; };
+               A7825503116519F70002E2DD /* chimerabellerophoncommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = chimerabellerophoncommand.cpp; sourceTree = "<group>"; };
+               A78434881162224F00100BE0 /* chimeraccodecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = chimeraccodecommand.h; sourceTree = "<group>"; };
+               A78434891162224F00100BE0 /* chimeraccodecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = chimeraccodecommand.cpp; sourceTree = "<group>"; };
                A7DA1FEC113FECD400BF472F /* ace.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = ace.cpp; sourceTree = "<group>"; };
                A7DA1FED113FECD400BF472F /* ace.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = ace.h; sourceTree = "<group>"; };
                A7DA1FEE113FECD400BF472F /* aligncommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = aligncommand.cpp; sourceTree = "<group>"; };
@@ -405,6 +415,8 @@
                A7DA217A113FECD400BF472F /* weighted.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = weighted.h; sourceTree = "<group>"; };
                A7DA217B113FECD400BF472F /* whittaker.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = whittaker.cpp; sourceTree = "<group>"; };
                A7DA217C113FECD400BF472F /* whittaker.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = whittaker.h; sourceTree = "<group>"; };
+               A7E8338B115BBDAA00739EC4 /* parsesffcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = parsesffcommand.cpp; sourceTree = "<group>"; };
+               A7E8338C115BBDAA00739EC4 /* parsesffcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = parsesffcommand.h; sourceTree = "<group>"; };
 /* End PBXFileReference section */
 
 /* Begin PBXGroup section */
@@ -618,6 +630,16 @@
                                A7DA2008113FECD400BF472F /* bootstrapsharedcommand.h */,
                                A7DA2017113FECD400BF472F /* chimeraseqscommand.cpp */,
                                A7DA2018113FECD400BF472F /* chimeraseqscommand.h */,
+                               A7825502116519F70002E2DD /* chimerabellerophoncommand.h */,
+                               A7825503116519F70002E2DD /* chimerabellerophoncommand.cpp */,
+                               A747E79B1163442A00FB9042 /* chimeracheckcommand.h */,
+                               A747E79C1163442A00FB9042 /* chimeracheckcommand.cpp */,
+                               A78434881162224F00100BE0 /* chimeraccodecommand.h */,
+                               A78434891162224F00100BE0 /* chimeraccodecommand.cpp */,
+                               A78254461164D7790002E2DD /* chimerapintailcommand.h */,
+                               A78254471164D7790002E2DD /* chimerapintailcommand.cpp */,
+                               A747E81C116365E000FB9042 /* chimeraslayercommand.h */,
+                               A747E81D116365E000FB9042 /* chimeraslayercommand.cpp */,
                                A7DA201D113FECD400BF472F /* classifyseqscommand.cpp */,
                                A7DA201E113FECD400BF472F /* classifyseqscommand.h */,
                                A7DA2021113FECD400BF472F /* clustercommand.cpp */,
@@ -674,6 +696,8 @@
                                A7DA20B9113FECD400BF472F /* otuhierarchycommand.h */,
                                A7DA20BC113FECD400BF472F /* parselistscommand.cpp */,
                                A7DA20BD113FECD400BF472F /* parselistscommand.h */,
+                               A7E8338B115BBDAA00739EC4 /* parsesffcommand.cpp */,
+                               A7E8338C115BBDAA00739EC4 /* parsesffcommand.h */,
                                A7DA20C0113FECD400BF472F /* parsimonycommand.cpp */,
                                A7DA20C1113FECD400BF472F /* parsimonycommand.h */,
                                A7DA20C2113FECD400BF472F /* pcacommand.cpp */,