added MPI code, broke up chimera.seqs into 5 separated commands, added parse.sff...

[mothur.git] / suffixdb.hpp

diff --git a/suffixdb.hpp b/suffixdb.hpp
index 1baa99e8d09fbcaa3a52abefb03811d6c3a3ed5f..4dc7e0fadd0cc1575250da05029d3ef32b388894 100644 (file)
--- a/suffixdb.hpp
+++ b/suffixdb.hpp
@@ -27,11 +27,17 @@ class SuffixDB : public Database {
        
 public:
        SuffixDB(int);
+       SuffixDB();
        ~SuffixDB();
        
        void generateDB() {}; //adding sequences generates the db
        void addSequence(Sequence);
        vector<int> findClosestSequences(Sequence*, int);
+       
+       #ifdef USE_MPI  
+       int MPISend(int); //just sends numSeqs
+       int MPIRecv(int);
+       #endif
 
 private:
        vector<SuffixTree> suffixForest;