added MPI code, broke up chimera.seqs into 5 separated commands, added parse.sff...

[mothur.git] / kmerdb.hpp

diff --git a/kmerdb.hpp b/kmerdb.hpp
index bdd9ca503910e6b764c3c067b5d9305409fafd6f..513f3f07d64bbd267e11bd16777fae5aadb97a5c 100644 (file)
--- a/kmerdb.hpp
+++ b/kmerdb.hpp
@@ -26,6 +26,7 @@ class KmerDB : public Database {
        
 public:
        KmerDB(string, int);
+       KmerDB();
        ~KmerDB();
        
        void generateDB();
@@ -36,6 +37,11 @@ public:
        vector<int> getSequencesWithKmer(int);  //returns vector of sequences that contain kmer passed in
        int getMaxKmer() { return maxKmer; }
        
+       #ifdef USE_MPI  
+       int MPISend(int); //just sends kmersize
+       int MPIRecv(int);
+       #endif
+       
 private:
        
        int kmerSize;