2010-04-07 |
westcott | added MPI code, broke up chimera.seqs into 5 separated... |
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2010-03-17 |
westcott | finished mpi for filter.seqs |
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2010-03-17 |
westcott | testing |
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2010-03-16 |
westcott | modified mpi code to save ram by writing out every... |
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2010-03-12 |
westcott | added MPI to dist.seqs command |
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2010-03-11 |
westcott | testing mpi |
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2010-03-04 |
westcott | mothur with external build |
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2010-03-04 |
westcott | changes to filter.seqs |
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2010-03-03 |
westcott | added checks for ^C to quit command instead of program |
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2010-03-01 |
westcott | adding mothurout.h and .cpp to repo |
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2010-02-26 |
westcott | filter.seqs can now accept multiple fasta files |
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2010-02-26 |
westcott | created mothurOut class to handle logfiles |
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2010-02-25 |
westcott | added parse.list command |
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2010-02-24 |
westcott | finished chimera changes |
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2010-02-23 |
westcott | added warning about merging with something above cutoff... |
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2010-02-23 |
westcott | added warning about merging with something above cutoff... |
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2010-02-22 |
westcott | chimeras, fix to sabundvector and sharedsabundvector... |
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2010-02-17 |
westcott | chimeras |
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2010-02-16 |
westcott | chimeracode |
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2010-02-12 |
westcott | working on chimeras |
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2010-02-04 |
pschloss | test |
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2010-02-04 |
pschloss | pat's ../ bug fix - test |
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2010-02-04 |
pschloss | pat's ../ bug fix |
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2010-02-03 |
westcott | added name option to read.tree for use in unifrac and... |
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2010-02-02 |
pschloss | pat's differences before v.1.8 |
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2010-02-02 |
westcott | fixed bugs for 1.8 |
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2010-01-28 |
westcott | fixed some bugs found while testing 1.8 |
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2010-01-27 |
westcott | fixed some bugs found while testing 1.8 |
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2010-01-27 |
westcott | added distance search method to classify.seqs |
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2010-01-26 |
westcott | added set.dir command and modified commands to redirect... |
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2010-01-26 |
pschloss | pat's edits from 1/26/2010 |
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2010-01-19 |
westcott | added out.hierarchy command |
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2010-01-19 |
pschloss | pat's mods to morisitahorn and pre.cluster |
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2010-01-19 |
westcott | added warning about average neighbor merges around... |
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2010-01-14 |
westcott | added formatmatrix, formatcolumn, and formatphylip... |
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2010-01-12 |
westcott | worked on hcluster. made .single command run using... |
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2010-01-05 |
westcott | you can now use a distance matrix as input for the... |
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2010-01-04 |
westcott | added pca command |
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2009-12-23 |
westcott | added average and nearest neighbor methods to hcluster |
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2009-12-23 |
westcott | precluster command finished |
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2009-12-21 |
westcott | fixed some bugs and added mgcluster command |
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2009-12-09 |
westcott | added sorted parameter to get.oturep, added error check... |
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2009-12-08 |
westcott | added list parameter to get.seqs and remove.seqs and... |
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2009-12-02 |
westcott | modified sequence class to read fasta files with commen... |
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2009-11-25 |
westcott | a few changes to chimera classes |
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2009-11-25 |
pschloss | version for 10.5 |
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2009-11-24 |
westcott | changed get.sharedotu to get.sharedseqs |
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2009-11-24 |
pschloss | fixed splash page citation |
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2009-11-24 |
westcott | changed get.sharedotu to get.sharedseqs |
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2009-11-24 |
westcott | fixed bug in hcluster command |
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2009-11-23 |
westcott | edited taxonomy equalizer to fix bug with windows |
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2009-11-23 |
westcott | updated phylotype command |
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2009-11-23 |
westcott | changed label outputs for phylotype command |
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2009-11-23 |
westcott | added phylotype command which reads a taxonomy file... |
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2009-11-19 |
westcott | fixed bug in libshuff |
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2009-11-17 |
westcott | final fixes for 1.7 |
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2009-11-13 |
westcott | finished work on classify.seqs bayesian method and... |
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2009-11-05 |
westcott | started work on classify.seqs command. changed the... |
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2009-11-02 |
westcott | added groups option to read.otu, added qtrim option... |
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2009-10-29 |
westcott | fixed bug with hcluster |
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2009-10-29 |
westcott | added hcluster command and fixed some bugs, namely... |
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2009-10-12 |
westcott | finished chimeraslayer method and added get.listcount... |
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2009-09-29 |
westcott | working on chimeraslayer and found bug in shared command. |
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2009-09-28 |
westcott | started adding chimeraslayer method and fixed minor... |
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2009-09-23 |
westcott | added get.sharedotu command |
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2009-09-22 |
westcott | removed line option |
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2009-09-21 |
westcott | align.check command added |
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2009-09-18 |
westcott | adding more error checking for list and group files... |
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2009-09-18 |
westcott | removing extra file output from pintail |
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2009-09-17 |
westcott | added check for blank files in openInputFile, add check... |
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2009-09-15 |
westcott | fixed some issues while testing 1.6 |
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2009-09-14 |
westcott | added help to chimera.seqs |
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2009-09-11 |
westcott | chimeracheck method added |
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2009-09-09 |
westcott | continued work on chimeras and fixed bug in trim.seqs... |
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2009-09-08 |
westcott | finished with ccode, returned bellerophon to last save... |
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2009-09-04 |
westcott | changed reporting in ccode to only report those who... |
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2009-09-04 |
westcott | ccode working - still need to paralellize |
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2009-09-02 |
westcott | updated pats contact and mothur header info |
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2009-09-01 |
westcott | changed raredisplay to use vectors instead of files |
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2009-09-01 |
westcott | added more descriptive error messages to sharedlist |
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2009-08-31 |
westcott | checking in chimera files in progress after move to... |
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2009-08-13 |
westcott | last changes before move |
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2009-08-13 |
westcott | last changes before move |
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2009-08-12 |
westcott | removing mallard |
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2009-08-11 |
westcott | chimera.seqs pintail is working. |
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2009-08-10 |
pschloss | mothur-v.1.5.0 |
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2009-08-06 |
westcott | This is 1.5. |
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2009-08-06 |
westcott | bugs fixes while testing for 1.5 release |
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2009-08-05 |
westcott | bugs fixes while testing for 1.5 release |
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2009-08-05 |
westcott | bugs fixes while testing for 1.5 release |
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2009-08-03 |
westcott | bugs for 1.5 |
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2009-08-03 |
westcott | bugs for 1.5 |
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2009-08-02 |
westcott | bugs fixes while testing for 1.5 release |
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2009-08-01 |
westcott | bugs fixes while testing for 1.5 release |
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2009-07-30 |
westcott | working on chimeras |
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2009-07-30 |
pschloss | pat's changes after generating wiki pages for 1.5 |
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2009-07-30 |
westcott | Thallinger changes to cluster command. |
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2009-07-30 |
pschloss | pat's edits prior to v.1.5 |
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2009-07-28 |
westcott | working on chimeras |
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2009-07-26 |
westcott | fixed bug with aligner in database class, worked on... |
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next |