| 2010-04-07 |
westcott | added MPI code, broke up chimera.seqs into 5 separated...
|
commit | commitdiff | tree |
| 2010-03-17 |
westcott | finished mpi for filter.seqs
|
commit | commitdiff | tree |
| 2010-03-17 |
westcott | testing
|
commit | commitdiff | tree |
| 2010-03-16 |
westcott | modified mpi code to save ram by writing out every...
|
commit | commitdiff | tree |
| 2010-03-12 |
westcott | added MPI to dist.seqs command
|
commit | commitdiff | tree |
| 2010-03-11 |
westcott | testing mpi
|
commit | commitdiff | tree |
| 2010-03-04 |
westcott | mothur with external build
|
commit | commitdiff | tree |
| 2010-03-04 |
westcott | changes to filter.seqs
|
commit | commitdiff | tree |
| 2010-03-03 |
westcott | added checks for ^C to quit command instead of program
|
commit | commitdiff | tree |
| 2010-03-01 |
westcott | adding mothurout.h and .cpp to repo
|
commit | commitdiff | tree |
| 2010-02-26 |
westcott | filter.seqs can now accept multiple fasta files
|
commit | commitdiff | tree |
| 2010-02-26 |
westcott | created mothurOut class to handle logfiles
|
commit | commitdiff | tree |
| 2010-02-25 |
westcott | added parse.list command
|
commit | commitdiff | tree |
| 2010-02-24 |
westcott | finished chimera changes
|
commit | commitdiff | tree |
| 2010-02-23 |
westcott | added warning about merging with something above cutoff...
|
commit | commitdiff | tree |
| 2010-02-23 |
westcott | added warning about merging with something above cutoff...
|
commit | commitdiff | tree |
| 2010-02-22 |
westcott | chimeras, fix to sabundvector and sharedsabundvector...
|
commit | commitdiff | tree |
| 2010-02-17 |
westcott | chimeras
|
commit | commitdiff | tree |
| 2010-02-16 |
westcott | chimeracode
|
commit | commitdiff | tree |
| 2010-02-12 |
westcott | working on chimeras
|
commit | commitdiff | tree |
| 2010-02-03 |
westcott | added name option to read.tree for use in unifrac and...
|
commit | commitdiff | tree |
| 2010-02-02 |
westcott | fixed bugs for 1.8
|
commit | commitdiff | tree |
| 2010-01-28 |
westcott | fixed some bugs found while testing 1.8
|
commit | commitdiff | tree |
| 2010-01-27 |
westcott | fixed some bugs found while testing 1.8
|
commit | commitdiff | tree |
| 2010-01-27 |
westcott | added distance search method to classify.seqs
|
commit | commitdiff | tree |
| 2010-01-26 |
westcott | added set.dir command and modified commands to redirect...
|
commit | commitdiff | tree |
| 2010-01-19 |
westcott | added out.hierarchy command
|
commit | commitdiff | tree |
| 2010-01-19 |
westcott | added warning about average neighbor merges around...
|
commit | commitdiff | tree |
| 2010-01-14 |
westcott | added formatmatrix, formatcolumn, and formatphylip...
|
commit | commitdiff | tree |
| 2010-01-12 |
westcott | worked on hcluster. made .single command run using...
|
commit | commitdiff | tree |
| 2010-01-05 |
westcott | you can now use a distance matrix as input for the...
|
commit | commitdiff | tree |
| 2010-01-04 |
westcott | added pca command
|
commit | commitdiff | tree |
| 2009-12-23 |
westcott | added average and nearest neighbor methods to hcluster
|
commit | commitdiff | tree |
| 2009-12-23 |
westcott | precluster command finished
|
commit | commitdiff | tree |
| 2009-12-21 |
westcott | fixed some bugs and added mgcluster command
|
commit | commitdiff | tree |
| 2009-12-09 |
westcott | added sorted parameter to get.oturep, added error checking...
|
commit | commitdiff | tree |
| 2009-12-08 |
westcott | added list parameter to get.seqs and remove.seqs and...
|
commit | commitdiff | tree |
| 2009-12-02 |
westcott | modified sequence class to read fasta files with comments...
|
commit | commitdiff | tree |
| 2009-11-25 |
westcott | a few changes to chimera classes
|
commit | commitdiff | tree |
| 2009-11-24 |
westcott | changed get.sharedotu to get.sharedseqs
|
commit | commitdiff | tree |
| 2009-11-24 |
westcott | changed get.sharedotu to get.sharedseqs
|
commit | commitdiff | tree |
| 2009-11-24 |
westcott | fixed bug in hcluster command
|
commit | commitdiff | tree |
| 2009-11-23 |
westcott | edited taxonomy equalizer to fix bug with windows
|
commit | commitdiff | tree |
| 2009-11-23 |
westcott | updated phylotype command
|
commit | commitdiff | tree |
| 2009-11-23 |
westcott | changed label outputs for phylotype command
|
commit | commitdiff | tree |
| 2009-11-23 |
westcott | added phylotype command which reads a taxonomy file...
|
commit | commitdiff | tree |
| 2009-11-19 |
westcott | fixed bug in libshuff
|
commit | commitdiff | tree |
| 2009-11-17 |
westcott | final fixes for 1.7
|
commit | commitdiff | tree |
| 2009-11-13 |
westcott | finished work on classify.seqs bayesian method and...
|
commit | commitdiff | tree |
| 2009-11-05 |
westcott | started work on classify.seqs command. changed the...
|
commit | commitdiff | tree |
| 2009-11-02 |
westcott | added groups option to read.otu, added qtrim option...
|
commit | commitdiff | tree |
| 2009-10-29 |
westcott | fixed bug with hcluster
|
commit | commitdiff | tree |
| 2009-10-29 |
westcott | added hcluster command and fixed some bugs, namely...
|
commit | commitdiff | tree |
| 2009-10-12 |
westcott | finished chimeraslayer method and added get.listcount...
|
commit | commitdiff | tree |
| 2009-09-29 |
westcott | working on chimeraslayer and found bug in shared command.
|
commit | commitdiff | tree |
| 2009-09-28 |
westcott | started adding chimeraslayer method and fixed minor...
|
commit | commitdiff | tree |
| 2009-09-23 |
westcott | added get.sharedotu command
|
commit | commitdiff | tree |
| 2009-09-22 |
westcott | removed line option
|
commit | commitdiff | tree |
| 2009-09-21 |
westcott | align.check command added
|
commit | commitdiff | tree |
| 2009-09-18 |
westcott | adding more error checking for list and group files...
|
commit | commitdiff | tree |
| 2009-09-18 |
westcott | removing extra file output from pintail
|
commit | commitdiff | tree |
| 2009-09-17 |
westcott | added check for blank files in openInputFile, add check...
|
commit | commitdiff | tree |
| 2009-09-15 |
westcott | fixed some issues while testing 1.6
|
commit | commitdiff | tree |
| 2009-09-14 |
westcott | added help to chimera.seqs
|
commit | commitdiff | tree |
| 2009-09-11 |
westcott | chimeracheck method added
|
commit | commitdiff | tree |
| 2009-09-09 |
westcott | continued work on chimeras and fixed bug in trim.seqs...
|
commit | commitdiff | tree |
| 2009-09-08 |
westcott | finished with ccode, returned bellerophon to last save...
|
commit | commitdiff | tree |
| 2009-09-04 |
westcott | changed reporting in ccode to only report those who...
|
commit | commitdiff | tree |
| 2009-09-04 |
westcott | ccode working - still need to paralellize
|
commit | commitdiff | tree |
| 2009-09-02 |
westcott | updated pats contact and mothur header info
|
commit | commitdiff | tree |
| 2009-09-01 |
westcott | changed raredisplay to use vectors instead of files
|
commit | commitdiff | tree |
| 2009-09-01 |
westcott | added more descriptive error messages to sharedlist
|
commit | commitdiff | tree |
| 2009-08-31 |
westcott | checking in chimera files in progress after move to...
|
commit | commitdiff | tree |
| 2009-08-13 |
westcott | last changes before move
|
commit | commitdiff | tree |
| 2009-08-13 |
westcott | last changes before move
|
commit | commitdiff | tree |
| 2009-08-12 |
westcott | removing mallard
|
commit | commitdiff | tree |
| 2009-08-11 |
westcott | chimera.seqs pintail is working.
|
commit | commitdiff | tree |
| 2009-08-06 |
westcott | This is 1.5.
|
commit | commitdiff | tree |
| 2009-08-06 |
westcott | bugs fixes while testing for 1.5 release
|
commit | commitdiff | tree |
| 2009-08-05 |
westcott | bugs fixes while testing for 1.5 release
|
commit | commitdiff | tree |
| 2009-08-05 |
westcott | bugs fixes while testing for 1.5 release
|
commit | commitdiff | tree |
| 2009-08-03 |
westcott | bugs for 1.5
|
commit | commitdiff | tree |
| 2009-08-03 |
westcott | bugs for 1.5
|
commit | commitdiff | tree |
| 2009-08-02 |
westcott | bugs fixes while testing for 1.5 release
|
commit | commitdiff | tree |
| 2009-08-01 |
westcott | bugs fixes while testing for 1.5 release
|
commit | commitdiff | tree |
| 2009-07-30 |
westcott | working on chimeras
|
commit | commitdiff | tree |
| 2009-07-30 |
westcott | Thallinger changes to cluster command.
|
commit | commitdiff | tree |
| 2009-07-28 |
westcott | working on chimeras
|
commit | commitdiff | tree |
| 2009-07-26 |
westcott | fixed bug with aligner in database class, worked on...
|
commit | commitdiff | tree |
| 2009-07-22 |
westcott | worked on chimeras
|
commit | commitdiff | tree |
| 2009-07-22 |
westcott | changed sequence class so that when constructor is...
|
commit | commitdiff | tree |
| 2009-07-20 |
westcott | fixed bugs in venn and aligner
|
commit | commitdiff | tree |
| 2009-07-14 |
westcott | *** empty log message ***
|
commit | commitdiff | tree |
| 2009-07-10 |
westcott | added sorted option to get.rabund command
|
commit | commitdiff | tree |
| 2009-07-09 |
westcott | added getline function to mothur and modified places...
|
commit | commitdiff | tree |
| 2009-07-08 |
westcott | added stricter compilation requirements and fixed resulting...
|
commit | commitdiff | tree |
| 2009-07-08 |
westcott | added system command
|
commit | commitdiff | tree |
| 2009-07-08 |
westcott | added remove.seqs command
|
commit | commitdiff | tree |
| 2009-07-08 |
westcott | added get.seqs command
|
commit | commitdiff | tree |
| 2009-07-08 |
westcott | added list.seqs command
|
commit | commitdiff | tree |
| next |
projects / mothur.git / search