added MPI code, broke up chimera.seqs into 5 separated commands, added parse.sff...

[mothur.git] / filterseqscommand.h

diff --git a/filterseqscommand.h b/filterseqscommand.h
index 1d2526fdca83114dcca76217917324d134bcc391..3c46036468401352987fb9d6cb61b48447613dab 100644 (file)
--- a/filterseqscommand.h
+++ b/filterseqscommand.h
@@ -47,12 +47,14 @@ private:
        int filterSequences();
        int createProcessesCreateFilter(Filters&, string);
        int createProcessesRunFilter(string, string);
-       int driverCreateFilter(Filters&, string, linePair*);
-       int driverRunFilter(string, string, string, linePair*); 
-       int driverMPIRun(istringstream&, MPI_File&);
-       int MPICreateFilter(Filters&, string);  
+       int driverRunFilter(string, string, string, linePair*);
+       int driverCreateFilter(Filters& F, string filename, linePair* line);
+       #ifdef USE_MPI
+       int driverMPIRun(int, int, MPI_File&, MPI_File&, vector<long>&);
+       int MPICreateFilter(int, int, Filters&, MPI_File&, vector<long>&);      
+       #endif
        int setLines(string);
-       int parseBuffer(string, vector<string>&);
+       
        
 };