added MPI code, broke up chimera.seqs into 5 separated commands, added parse.sff...

[mothur.git] / readmatrix.hpp

diff --git a/readmatrix.hpp b/readmatrix.hpp
index d4edb5b8ad866e10a15ce82ef22d22d418c68e84..31a4da49c8decf24b75b059db4890d377fa54aef 100644 (file)
--- a/readmatrix.hpp
+++ b/readmatrix.hpp
@@ -21,7 +21,7 @@ class SparseMatrix;
 class ReadMatrix {
 
 public:
-       ReadMatrix(){   D = new SparseMatrix();  m = MothurOut::getInstance();  }
+       ReadMatrix(){   D = new SparseMatrix();  m = MothurOut::getInstance();   globaldata = GlobalData::getInstance(); }
        virtual ~ReadMatrix() {}
        virtual int read(NameAssignment*){ return 1; }
        
@@ -38,6 +38,7 @@ protected:
        GlobalData* globaldata;
        float cutoff;
        MothurOut* m;
+       bool sim;
 };