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]> git.donarmstrong.com Git - samtools.git/history - bcftools/prob1.c

2013-03-12	Petr Danecek	Merge remote branch 'remotes/master/master' into fb...	blob \| commitdiff \| raw
2013-03-07	Petr Danecek	backup commit	blob \| commitdiff \| raw \| diff to current
2013-01-28	Petr Danecek	Merge remote branch 'remotes/pierre/master' into develop	blob \| commitdiff \| raw \| diff to current
2013-01-07	Heng Li	dump log-likelihood	blob \| commitdiff \| raw \| diff to current
2012-10-10	Petr Danecek	Complain when BAM cannot be open. Severe bug fixed...	blob \| commitdiff \| raw \| diff to current
2012-09-12	Petr Danecek	Merge remote branch 'remotes/pd3/master'	blob \| commitdiff \| raw \| diff to current
2012-07-18	Petr Danecek	Fix in output of missing haploid genotypes	blob \| commitdiff \| raw \| diff to current
2012-07-05	Petr Danecek	Allow filtering by read group or sample name in bamchec...	blob \| commitdiff \| raw \| diff to current
2012-07-05	Petr Danecek	VCF annotations with and without -m and more robust...	blob \| commitdiff \| raw \| diff to current
2012-07-03	Petr Danecek	Bug fixes	blob \| commitdiff \| raw \| diff to current
2012-07-02	Petr Danecek	Alternative model for multiallelic and rare-variant...	blob \| commitdiff \| raw \| diff to current
2012-05-30	Petr Danecek	Fixed errors introduced by the 8c15f916dabce475febdf508...	blob \| commitdiff \| raw \| diff to current
2012-05-25	Petr Danecek	Fix to prevent long stretches of Ns to be mistaken...	blob \| commitdiff \| raw \| diff to current
2011-06-03	Heng Li	* 0.1.16-dev (r969:252)	blob \| commitdiff \| raw \| diff to current
2011-04-17	Heng Li	* fixed a bug in bedidx: input BED not sorted	blob \| commitdiff \| raw \| diff to current
2011-04-15	Heng Li	* Added Brent's method for frequency estimate	blob \| commitdiff \| raw \| diff to current
2011-04-08	Heng Li	* added bam_verbose global variable	blob \| commitdiff \| raw \| diff to current
2011-03-30	Heng Li	* added BED support to samtools view and mpileup and...	blob \| commitdiff \| raw \| diff to current
2011-03-18	Heng Li	* allow to change the compression level in BAM output	blob \| commitdiff \| raw \| diff to current
2011-03-08	Heng Li	added the haploid mode	blob \| commitdiff \| raw \| diff to current
2011-02-25	Heng Li	* change the order of PL/GL according to the latest...	blob \| commitdiff \| raw \| diff to current
2011-02-24	Heng Li	added "const" to bcf_p1_cal()	blob \| commitdiff \| raw \| diff to current
2010-12-03	Heng Li	* remove "-f". Instead always compute consensus quality	blob \| commitdiff \| raw \| diff to current
2010-11-20	Heng Li	* samtools-0.1.10-9 (r844)	blob \| commitdiff \| raw \| diff to current
2010-11-10	Heng Li	bcftools: compute equal-tail (Bayesian) credible interval	blob \| commitdiff \| raw \| diff to current
2010-11-09	Heng Li	* samtools-0.1.9-6 (r803)	blob \| commitdiff \| raw \| diff to current
2010-10-12	Heng Li	* vcfutils.pl: fixed a typo in help message	blob \| commitdiff \| raw \| diff to current
2010-09-15	Heng Li	fixed a minor issue	blob \| commitdiff \| raw \| diff to current
2010-09-08	Heng Li	* samtools-0.1.8-13 (r715)	blob \| commitdiff \| raw \| diff to current
2010-09-03	Heng Li	quite a lot changes to the contrast caller, but I still...	blob \| commitdiff \| raw \| diff to current
2010-09-03	Heng Li	* changed 3.434 to 4.343 (typo!)	blob \| commitdiff \| raw \| diff to current
2010-09-01	Heng Li	Do not compile _BCF_QUAD by default	blob \| commitdiff \| raw \| diff to current
2010-08-31	Heng Li	preliminary contrast variant caller	blob \| commitdiff \| raw \| diff to current
2010-08-31	Heng Li	z' and z'' can be calculated	blob \| commitdiff \| raw \| diff to current
2010-08-31	Heng Li	* rename vcfout.c as call1.c	blob \| commitdiff \| raw \| diff to current
2010-08-18	Heng Li	allow to read the prior from the error output. EM itera...	blob \| commitdiff \| raw \| diff to current
2010-08-14	Heng Li	faster for large sample size (in principle)	blob \| commitdiff \| raw \| diff to current
2010-08-14	Heng Li	* a numerically stable method to calculate z_{jk}	blob \| commitdiff \| raw \| diff to current
2010-08-07	Heng Li	* bcftools: add HWE (no testing for now)	blob \| commitdiff \| raw \| diff to current
2010-08-04	Heng Li	move bcftools to samtools	blob \| commitdiff \| raw \| diff to current

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