| 2014-02-28 |
Sarah Westcott | pcr.seqs bug fix. working on shannon range calc
|
commit | commitdiff | tree |
| 2014-02-25 |
Sarah Westcott | fixed bug in make.biom with picrust that didn’t allow...
|
commit | commitdiff | tree |
| 2014-02-12 |
Sarah Westcott | fixes while building
|
commit | commitdiff | tree |
| 2014-02-11 |
Sarah Westcott | fixing help
|
commit | commitdiff | tree |
| 2014-02-10 |
Sarah Westcott | fixes while testing 1.33.0
|
commit | commitdiff | tree |
| 2014-02-04 |
Sarah Westcott | added relabund parameter to classify.seqs and summary...
|
commit | commitdiff | tree |
| 2014-02-03 |
Sarah Westcott | added mergesfffiles command. added current directories...
|
commit | commitdiff | tree |
| 2014-01-31 |
Sarah Westcott | fixed bug in pam
|
commit | commitdiff | tree |
| 2014-01-29 |
Sarah Westcott | working on get.communitytype command
|
commit | commitdiff | tree |
| 2014-01-21 |
Sarah Westcott | added rjsd calculator. improved work balance load...
|
commit | commitdiff | tree |
| 2014-01-21 |
Sarah Westcott | Merge remote-tracking branch 'origin/master'
|
commit | commitdiff | tree |
| 2014-01-21 |
Sarah Westcott | working on pam
|
commit | commitdiff | tree |
| 2014-01-21 |
Sarah Westcott | Test new machine.
|
commit | commitdiff | tree |
| 2014-01-09 |
Sarah Westcott | added Jensen-Shannon calc. working on get.communitytype...
|
commit | commitdiff | tree |
| 2013-12-03 |
Sarah Westcott | added oligos, group, pdiffs, bdiffs, ldiffs, sdiffs...
|
commit | commitdiff | tree |
| 2013-11-19 |
Sarah Westcott | typo
|
commit | commitdiff | tree |
| 2013-11-19 |
Sarah Westcott | added binary file operations to mothurout class. added...
|
commit | commitdiff | tree |
| 2013-10-22 |
Sarah Westcott | added picrust and ref taxonomy parameters to make.biom
|
commit | commitdiff | tree |
| 2013-10-18 |
Sarah Westcott | modifications to commands to add headers to list file.
|
commit | commitdiff | tree |
| 2013-10-17 |
Sarah Westcott | Merge remote-tracking branch 'origin/master'
|
commit | commitdiff | tree |
| 2013-10-17 |
Sarah Westcott | adding labels to list file.
|
commit | commitdiff | tree |
| 2013-10-17 |
Sarah Westcott | added fastq to list.seqs, get.seqs and remove.seqs...
|
commit | commitdiff | tree |
| 2013-10-08 |
Sarah Westcott | added otulabels to heatmap.bin. made OTUlabels “smarter...
|
commit | commitdiff | tree |
| 2013-10-02 |
Sarah Westcott | changes while testing
|
commit | commitdiff | tree |
| 2013-09-18 |
Sarah Westcott | Merge remote-tracking branch 'origin'
|
commit | commitdiff | tree |
| 2013-09-18 |
Sarah Westcott | added lefse command. added check for hard filter length...
|
commit | commitdiff | tree |
| 2013-08-14 |
Sarah Westcott | Merge remote-tracking branch 'origin'
|
commit | commitdiff | tree |
| 2013-08-14 |
Sarah Westcott | changed name of get.metacommunity to get.communitytype...
|
commit | commitdiff | tree |
| 2013-08-02 |
Sarah Westcott | Merge remote-tracking branch 'origin'
|
commit | commitdiff | tree |
| 2013-08-02 |
Sarah Westcott | Qualscore gobbles
|
commit | commitdiff | tree |
| 2013-07-18 |
Sarah Westcott | added adjust parameter to mgcluster. fixed bug in classify...
|
commit | commitdiff | tree |
| 2013-06-24 |
Sarah Westcott | Merge remote-tracking branch 'origin'
|
commit | commitdiff | tree |
| 2013-06-24 |
Sarah Westcott | added kruskal.wallis command. added worked on make...
|
commit | commitdiff | tree |
| 2013-06-13 |
Sarah Westcott | mgcluster with count file needed to create a nameMap...
|
commit | commitdiff | tree |
| 2013-06-13 |
Sarah Westcott | added make.lefse command. fixed bug in make.contigs...
|
commit | commitdiff | tree |
| 2013-05-29 |
Sarah Westcott | get.seqs not renaming sequences correctly for dups...
|
commit | commitdiff | tree |
| 2013-05-29 |
Sarah Westcott | added rename.seqs command.
|
commit | commitdiff | tree |
| 2013-05-28 |
Sarah Westcott | case sensitive include statement caused issues for...
|
commit | commitdiff | tree |
| 2013-05-28 |
Sarah Westcott | citation changes for 1.31.0
|
commit | commitdiff | tree |
| 2013-05-24 |
Sarah Westcott | Merge remote-tracking branch 'origin'
|
commit | commitdiff | tree |
| 2013-05-24 |
Sarah Westcott | added debugging to otu.association
|
commit | commitdiff | tree |
| 2013-05-23 |
Sarah Westcott | changes while testing
|
commit | commitdiff | tree |
| 2013-05-17 |
Sarah Westcott | changed how rarefaction commands find the lci and hci...
|
commit | commitdiff | tree |
| 2013-05-17 |
Sarah Westcott | added modify names parameter to set.dir
|
commit | commitdiff | tree |
| 2013-05-15 |
Sarah Westcott | added make.lookup command.
|
commit | commitdiff | tree |
| 2013-05-14 |
Sarah Westcott | added count file to create.database command. corrected...
|
commit | commitdiff | tree |
| 2013-05-13 |
Sarah Westcott | cluster.split was not sorting the list file in order...
|
commit | commitdiff | tree |
| 2013-05-13 |
Sarah Westcott | added sparcc command. fixed bug in remove.groups that...
|
commit | commitdiff | tree |
| 2013-05-06 |
Sarah Westcott | paralellized parsimony, unifrac.unweighted, phylo.diversity...
|
commit | commitdiff | tree |
| 2013-02-13 |
Sarah Westcott | added trim overlap parameter to make.contigs
|
commit | commitdiff | tree |
| 2013-02-13 |
Sarah Westcott | added merge.taxsummary command. added column format...
|
commit | commitdiff | tree |
| 2013-02-12 |
Sarah Westcott | added order=A or order=B to trim.flows and shhh.flows...
|
commit | commitdiff | tree |
| 2013-02-11 |
Sarah Westcott | added ':' name check to seq. error and fastq.info....
|
commit | commitdiff | tree |
| 2013-02-06 |
Sarah Westcott | added *.count.summary file to count.groups command...
|
commit | commitdiff | tree |
| 2013-01-29 |
Sarah Westcott | added get.dists and remove.dists commands. fixed bug...
|
commit | commitdiff | tree |
| 2013-01-28 |
Sarah Westcott | added checks to make sure windows processes completed...
|
commit | commitdiff | tree |
| 2013-01-25 |
Sarah Westcott | added primer.design command. fixed bug with linux...
|
commit | commitdiff | tree |
| 2013-01-18 |
Sarah Westcott | fixed seq. error align=f issue. added std and ave calcs...
|
commit | commitdiff | tree |
| 2013-01-16 |
Sarah Westcott | added topdown parameter to pre.cluster. added more...
|
commit | commitdiff | tree |
| 2013-01-11 |
Sarah Westcott | fixed bug in pre.cluster with output file name change...
|
commit | commitdiff | tree |
| 2013-01-08 |
Sarah Westcott | added dereplicate parameter to chimera.slayer and chimera...
|
commit | commitdiff | tree |
| 2013-01-04 |
Sarah Westcott | Merge remote-tracking branch 'origin/master'
|
commit | commitdiff | tree |
| 2013-01-04 |
Sarah Westcott | added filter.shared command. fixed lci and uci for...
|
commit | commitdiff | tree |
| 2012-12-21 |
Sarah Westcott | added ignore option to oligos files for make.contigs...
|
commit | commitdiff | tree |
| 2012-12-21 |
Sarah Westcott | trim.seqs filename
|
commit | commitdiff | tree |
| 2012-12-21 |
Sarah Westcott | working on make.contigs. fixed trim.seqs filename issue
|
commit | commitdiff | tree |
| 2012-12-18 |
Sarah Westcott | added sharedotu parameter to venn command. working...
|
commit | commitdiff | tree |
| 2012-12-17 |
Sarah Westcott | fixed issue in tree.shared when shared file was not...
|
commit | commitdiff | tree |
| 2012-12-14 |
Sarah Westcott | added warning to readBlast to warn about duplicate...
|
commit | commitdiff | tree |
| 2012-12-14 |
Sarah Westcott | added kruskwalliscommand to Xcode project and fixed...
|
commit | commitdiff | tree |
| 2012-12-14 |
Sarah Westcott | fixed outputName creator, added debugging to readblast
|
commit | commitdiff | tree |
| 2012-12-13 |
Sarah Westcott | Merge remote-tracking branch 'origin/master'
|
commit | commitdiff | tree |
| 2012-12-13 |
Sarah Westcott | fixed bug in phylo.diversity rooting. added filename...
|
commit | commitdiff | tree |
| 2012-11-06 |
Sarah Westcott | changed added group output to indicator command. a...
|
commit | commitdiff | tree |
| 2012-11-02 |
Sarah Westcott | fix to summary.tax for 1.28.0
|
commit | commitdiff | tree |
| 2012-10-30 |
Sarah Westcott | Merge remote-tracking branch 'origin/master'
|
commit | commitdiff | tree |
| 2012-10-30 |
Sarah Westcott | classify.seqs allows sequences to be in taxonomy file...
|
commit | commitdiff | tree |
| 2012-10-22 |
Sarah Westcott | Merge remote-tracking branch 'origin/master'
|
commit | commitdiff | tree |
| 2012-10-22 |
Sarah Westcott | added sets to amova and homova commands. added oligos...
|
commit | commitdiff | tree |
| 2012-10-09 |
Sarah Westcott | changed dups parameter to dereplicate in chimera.uchime.
|
commit | commitdiff | tree |
| 2012-10-09 |
Sarah Westcott | added dups parameter to chimera.uchime. working on...
|
commit | commitdiff | tree |
| 2012-10-03 |
Sarah Westcott | added zap method to classify.seqs and changed bayesian...
|
commit | commitdiff | tree |
| 2012-10-02 |
Sarah Westcott | added classify.shared command and random forest files...
|
commit | commitdiff | tree |
| 2012-09-25 |
Sarah Westcott | added count file to get.oturep, pre.cluster, screen...
|
commit | commitdiff | tree |
| 2012-09-14 |
Sarah Westcott | added count file to trim.seqs, get.groups, get.lineage...
|
commit | commitdiff | tree |
| 2012-09-12 |
Sarah Westcott | optimizing classify.seqs calculating of template probabilities.
|
commit | commitdiff | tree |
| 2012-09-11 |
Sarah Westcott | added count file to get.groups and remove.groups. added...
|
commit | commitdiff | tree |
| 2012-09-07 |
Sarah Westcott | major change to the tree class to use the count table...
|
commit | commitdiff | tree |
| 2012-08-24 |
Sarah Westcott | added sff.multiple command. fixed issue with windows...
|
commit | commitdiff | tree |
| 2012-08-21 |
Sarah Westcott | added oligos, pdiffs, bdiffs, ldiffs, sdiffs, tiffs...
|
commit | commitdiff | tree |
| 2012-08-14 |
Sarah Westcott | added code to format fast files for uchime. started...
|
commit | commitdiff | tree |
| 2012-08-13 |
Sarah Westcott | added count file to chimera.uchime. found issue with...
|
commit | commitdiff | tree |
| 2012-08-08 |
Sarah Westcott | added count parameter to chimera.slayer command
|
commit | commitdiff | tree |
| 2012-08-08 |
Sarah Westcott | added SequenceCountParser class to parse the count...
|
commit | commitdiff | tree |
| 2012-08-06 |
Sarah Westcott | changes while testing 1.27
|
commit | commitdiff | tree |
| 2012-08-01 |
Sarah Westcott | paralellized chop.seqs
|
commit | commitdiff | tree |
| 2012-07-31 |
Sarah Westcott | added count file to cluster.classic and cluster.split...
|
commit | commitdiff | tree |
| 2012-07-30 |
Sarah Westcott | fixed subsample name file name issue. added count...
|
commit | commitdiff | tree |
| 2012-07-27 |
Sarah Westcott | added sparseDistanceMatrix class. Modified cluster...
|
commit | commitdiff | tree |
| 2012-07-11 |
Sarah Westcott | working on adding count file to mgcluster
|
commit | commitdiff | tree |
| next |
projects / mothur.git / search