git.donarmstrong.com Git - mothur.git/commit

]> git.donarmstrong.com Git - mothur.git/commit

author	Sarah Westcott <mothur.westcott@gmail.com>
	Thu, 9 Jan 2014 14:44:50 +0000 (09:44 -0500)
committer	Sarah Westcott <mothur.westcott@gmail.com>
	Thu, 9 Jan 2014 14:44:50 +0000 (09:44 -0500)
commit	a2cde58c1e72199498a2142983ef040dce36da10
tree	4cf772f534ae6c800cdead4d0f9d1c76a6f73f56	tree \| snapshot
parent	3e8b80da722e11c72bce957e2f42a6e884dd02b6	commit \| diff

added Jensen-Shannon calc. working on get.communitytype command. fixed bug in get.oturep command with count file. fixed bug in trim.flows that caused issue when you read back in scrap flow file. added log transform parameter to trims.seqs command and allow non paired barcodes and primers to use reorient. fixed bug in lefse when kruskal returned nan.

32 files changed:

Mothur.xcodeproj/project.pbxproj		diff \| blob \| history
collectsharedcommand.cpp		diff \| blob \| history
communitytype.cpp	[new file with mode: 0644]	blob
communitytype.h	[new file with mode: 0644]	blob
flowdata.cpp		diff \| blob \| history
getmetacommunitycommand.cpp		diff \| blob \| history
getmetacommunitycommand.h		diff \| blob \| history
getoturepcommand.cpp		diff \| blob \| history
kmeans.cpp	[new file with mode: 0644]	blob
kmeans.h	[new file with mode: 0644]	blob
linearalgebra.cpp		diff \| blob \| history
linearalgebra.h		diff \| blob \| history
matrixoutputcommand.cpp		diff \| blob \| history
matrixoutputcommand.h		diff \| blob \| history
metastatscommand.cpp		diff \| blob \| history
pam.cpp	[new file with mode: 0644]	blob
pam.h	[new file with mode: 0644]	blob
qFinderDMM.cpp		diff \| blob \| history
qFinderDMM.h		diff \| blob \| history
qualityscores.cpp		diff \| blob \| history
qualityscores.h		diff \| blob \| history
seqsummarycommand.cpp		diff \| blob \| history
shannonrange.cpp	[new file with mode: 0644]	blob
shannonrange.h	[new file with mode: 0644]	blob
sharedjsd.cpp	[new file with mode: 0644]	blob
sharedjsd.h	[new file with mode: 0644]	blob
summarysharedcommand.cpp		diff \| blob \| history
summarysharedcommand.h		diff \| blob \| history
trimflowscommand.cpp		diff \| blob \| history
trimseqscommand.cpp		diff \| blob \| history
trimseqscommand.h		diff \| blob \| history
validcalculator.cpp		diff \| blob \| history

Mothur--16S microbiota sequencing software; mirror of main repository with my branches

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