cluster.split was not sorting the list file in order of abundance

diff --git a/clustersplitcommand.cpp b/clustersplitcommand.cpp
index 74867ebdeb0ec271d07d727b7cf9c8d19aa13284..270ea6208d8ead0683d8cf46fb8d7a417469c243 100644 (file)
--- a/clustersplitcommand.cpp
+++ b/clustersplitcommand.cpp
@@ -843,9 +843,12 @@ int ClusterSplitCommand::mergeLists(vector<string> listNames, map<float, int> us
                        if (itLabel->first == -1) { thisLabel = "unique"; }
                        else { thisLabel = toString(itLabel->first,  length-1);  } 
                        
-                       outList << thisLabel << '\t' << itLabel->second << '\t';
+                       //outList << thisLabel << '\t' << itLabel->second << '\t';
             
             RAbundVector* rabund = NULL;
+            ListVector completeList;
+            completeList.setLabel(thisLabel);
+            
             if (countfile == "") {
                 rabund = new RAbundVector();
                 rabund->setLabel(thisLabel);
@@ -854,7 +857,8 @@ int ClusterSplitCommand::mergeLists(vector<string> listNames, map<float, int> us
                        //add in singletons
                        if (listSingle != NULL) {
                                for (int j = 0; j < listSingle->getNumBins(); j++) {
-                                       outList << listSingle->get(j) << '\t';
+                                       //outList << listSingle->get(j) << '\t';
+                    completeList.push_back(listSingle->get(j));
                                        if (countfile == "") { rabund->push_back(m->getNumNames(listSingle->get(j))); }
                                }
                        }
@@ -871,7 +875,8 @@ int ClusterSplitCommand::mergeLists(vector<string> listNames, map<float, int> us
                                if (list == NULL) { m->mothurOut("Error merging listvectors in file " + listNames[k]); m->mothurOutEndLine();  }        
                                else {          
                                        for (int j = 0; j < list->getNumBins(); j++) {
-                                               outList << list->get(j) << '\t';
+                                               //outList << list->get(j) << '\t';
+                        completeList.push_back(list->get(j));
                                                if (countfile == "") { rabund->push_back(m->getNumNames(list->get(j))); }
                                        }
                                        delete list;
@@ -884,7 +889,8 @@ int ClusterSplitCommand::mergeLists(vector<string> listNames, map<float, int> us
                 sabund.print(outSabund);
                 rabund->print(outRabund);
             }
-                       outList << endl;
+                       //outList << endl;
+            completeList.print(outList);
                        
                        if (rabund != NULL) { delete rabund; }
                }