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2009-03-23	westcott	added sharedochiai and sharedanderberg calculators	commit \| commitdiff \| tree
2009-03-23	westcott	fixed libshuff signif. values	commit \| commitdiff \| tree
2009-03-23	westcott	put back no command and worked on libshuff	commit \| commitdiff \| tree
2009-03-20	westcott	removed no command because it is never called now that...	commit \| commitdiff \| tree
2009-03-20	westcott	documentation	commit \| commitdiff \| tree
2009-03-19	westcott	fixed memory leak globaldata container structures,...	commit \| commitdiff \| tree
2009-03-19	westcott	fixed memory leak of groupmap in reads	commit \| commitdiff \| tree
2009-03-19	westcott	updated errorchecking so it checks if the parameter...	commit \| commitdiff \| tree
2009-03-19	westcott	libshuff and updated help to include libshuff and modificati...	commit \| commitdiff \| tree
2009-03-18	westcott	working on libshuff	commit \| commitdiff \| tree
2009-03-16	westcott	added nseqs and sharednseqs calculators, removed excess...	commit \| commitdiff \| tree
2009-03-10	westcott	working on libshuff	commit \| commitdiff \| tree
2009-03-09	westcott	added abs() to weighted and unweighted to account for...	commit \| commitdiff \| tree
2009-03-09	westcott	fixed bug in read.tree	commit \| commitdiff \| tree
2009-03-09	westcott	fixed bug in summary.shared for groups	commit \| commitdiff \| tree
2009-03-09	westcott	fixed bug with line and label parameters and added...	commit \| commitdiff \| tree
2009-03-09	westcott	deleted read.shared command and added its functionality...	commit \| commitdiff \| tree
2009-03-09	westcott	added ability for user to select which groups to analyze...	commit \| commitdiff \| tree
2009-03-09	westcott	fixed outputs in unifrac to look the same	commit \| commitdiff \| tree
2009-03-09	westcott	fixed memory issue with cluster command	commit \| commitdiff \| tree
2009-03-09	westcott	fixed valid parameters to include shared parameter...	commit \| commitdiff \| tree
2009-03-06	westcott	got rid of rd_parsimony ext.	commit \| commitdiff \| tree
2009-03-06	westcott	fixed bug wit unifrac files	commit \| commitdiff \| tree
2009-03-06	westcott	added full matrix files	commit \| commitdiff \| tree
2009-03-06	westcott	fixed bug in random option of parsimony()	commit \| commitdiff \| tree
2009-03-06	westcott	changed format of output in unifrac and parsimony files	commit \| commitdiff \| tree
2009-03-06	westcott	fixed bug in read tree	commit \| commitdiff \| tree
2009-03-06	westcott	fixed bug in read tree	commit \| commitdiff \| tree
2009-03-05	westcott	working on readtree	commit \| commitdiff \| tree
2009-03-04	westcott	unifrac.weighted	commit \| commitdiff \| tree
2009-03-03	westcott	parsimony output changed	commit \| commitdiff \| tree
2009-03-03	westcott	unifrac.unweighted command changes	commit \| commitdiff \| tree
2009-03-02	westcott	worked on unifrac.unweighted()	commit \| commitdiff \| tree
2009-03-02	westcott	fixed bug in unweighted	commit \| commitdiff \| tree
2009-02-27	westcott	fixed parsimony with groups and worked on unifrac.unweighted...	commit \| commitdiff \| tree
2009-02-26	westcott	parsimony with groups	commit \| commitdiff \| tree
2009-02-26	westcott	parsimony with groups	commit \| commitdiff \| tree
2009-02-26	westcott	weightedcommand	commit \| commitdiff \| tree
2009-02-24	westcott	changed unifrac.weighted()	commit \| commitdiff \| tree
2009-02-24	westcott	changed unifrac.weighted()	commit \| commitdiff \| tree
2009-02-24	westcott	changed unifrac.weighted()	commit \| commitdiff \| tree
2009-02-24	westcott	test	commit \| commitdiff \| tree
2009-02-24	westcott	parsimony fix	commit \| commitdiff \| tree
2009-02-23	westcott	fixed parsimony for groups	commit \| commitdiff \| tree
2009-02-23	westcott	fixed parsimony for groups	commit \| commitdiff \| tree
2009-02-23	westcott	fixed unweighted calculator	commit \| commitdiff \| tree
2009-02-20	westcott	fixed unweighted calculator	commit \| commitdiff \| tree
2009-02-19	westcott	added mothur.h and fixed includes in many files	commit \| commitdiff \| tree
2009-02-19	westcott	fixed linking error in collect, collectshared, and...	commit \| commitdiff \| tree
2009-02-18	westcott	Johns fix	commit \| commitdiff \| tree
2009-02-18	westcott	parsimony command now uses groups, fixed bug with unweighted...	commit \| commitdiff \| tree
2009-02-18	westcott	parsimony command now uses groups, fixed bug with unweighted...	commit \| commitdiff \| tree
2009-02-18	westcott	changed unweighted and weighted score cumulatives to...	commit \| commitdiff \| tree
2009-02-18	westcott	fixed bug in fastmap readFastaFile so that if there...	commit \| commitdiff \| tree
2009-02-18	westcott	minor bugs fixes and added line and label options to...	commit \| commitdiff \| tree
2009-02-13	westcott	minor error checking fixes	commit \| commitdiff \| tree
2009-02-13	westcott	added read.shared, broke up globaldata a bit	commit \| commitdiff \| tree
2009-02-12	westcott	fixed bug with displaying info for collect.shared(...	commit \| commitdiff \| tree
2009-02-11	westcott	added errorchecking and help info on new unifrac and...	commit \| commitdiff \| tree
2009-02-11	westcott	adding treeclimber and unifrac pieces	commit \| commitdiff \| tree
2009-01-29	westcott	changed all files to be relative to project instead...	commit \| commitdiff \| tree
2009-01-29	westcott	rarefaction.shared() fixed bug	commit \| commitdiff \| tree
2009-01-28	westcott	fixed line and label bug.	commit \| commitdiff \| tree
2009-01-28	westcott	updated help	commit \| commitdiff \| tree
2009-01-28	westcott	rarefaction default bug	commit \| commitdiff \| tree
2009-01-28	westcott	fixed parameter issues	commit \| commitdiff \| tree
2009-01-28	westcott	collect.single bug in readphil.	commit \| commitdiff \| tree
2009-01-26	westcott	fixed summary.shared bug and set jumble default to 1.	commit \| commitdiff \| tree
2009-01-23	westcott	fixed bug in sharedcommand and parselistcommand and...	commit \| commitdiff \| tree
2009-01-22	westcott	finishing the container classes, combining read.otu...	commit \| commitdiff \| tree
2009-01-21	westcott	deconvolute command	commit \| commitdiff \| tree
2009-01-20	westcott	changed read.shared to read.list and incorporated the...	commit \| commitdiff \| tree
2009-01-16	westcott	Initial revision	commit \| commitdiff \| tree

Mothur--16S microbiota sequencing software; mirror of main repository with my branches

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