| 2014-01-21 |
Sarah Westcott | added rjsd calculator. improved work balance load...
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commit | commitdiff | tree |
| 2014-01-21 |
Sarah Westcott | Merge remote-tracking branch 'origin/master'
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commit | commitdiff | tree |
| 2014-01-21 |
Sarah Westcott | working on pam
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commit | commitdiff | tree |
| 2014-01-21 |
Sarah Westcott | Test new machine.
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commit | commitdiff | tree |
| 2014-01-09 |
Sarah Westcott | added Jensen-Shannon calc. working on get.communitytype...
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commit | commitdiff | tree |
| 2013-12-03 |
Sarah Westcott | added oligos, group, pdiffs, bdiffs, ldiffs, sdiffs...
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commit | commitdiff | tree |
| 2013-11-19 |
Sarah Westcott | typo
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commit | commitdiff | tree |
| 2013-11-19 |
Sarah Westcott | added binary file operations to mothurout class. added...
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commit | commitdiff | tree |
| 2013-10-22 |
Sarah Westcott | added picrust and ref taxonomy parameters to make.biom
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commit | commitdiff | tree |
| 2013-10-18 |
Sarah Westcott | modifications to commands to add headers to list file.
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commit | commitdiff | tree |
| 2013-10-17 |
Sarah Westcott | Merge remote-tracking branch 'origin/master'
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commit | commitdiff | tree |
| 2013-10-17 |
Sarah Westcott | adding labels to list file.
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commit | commitdiff | tree |
| 2013-10-17 |
Sarah Westcott | added fastq to list.seqs, get.seqs and remove.seqs...
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commit | commitdiff | tree |
| 2013-10-08 |
Sarah Westcott | added otulabels to heatmap.bin. made OTUlabels “smarter...
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commit | commitdiff | tree |
| 2013-10-02 |
Sarah Westcott | changes while testing
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commit | commitdiff | tree |
| 2013-09-18 |
Sarah Westcott | Merge remote-tracking branch 'origin'
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commit | commitdiff | tree |
| 2013-09-18 |
Sarah Westcott | added lefse command. added check for hard filter length...
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commit | commitdiff | tree |
| 2013-08-14 |
Sarah Westcott | Merge remote-tracking branch 'origin'
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commit | commitdiff | tree |
| 2013-08-14 |
Sarah Westcott | changed name of get.metacommunity to get.communitytype...
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commit | commitdiff | tree |
| 2013-08-02 |
Sarah Westcott | Merge remote-tracking branch 'origin'
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commit | commitdiff | tree |
| 2013-08-02 |
Sarah Westcott | Qualscore gobbles
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commit | commitdiff | tree |
| 2013-07-18 |
Sarah Westcott | added adjust parameter to mgcluster. fixed bug in classify...
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commit | commitdiff | tree |
| 2013-06-24 |
Sarah Westcott | Merge remote-tracking branch 'origin'
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commit | commitdiff | tree |
| 2013-06-24 |
Sarah Westcott | added kruskal.wallis command. added worked on make...
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commit | commitdiff | tree |
| 2013-06-24 |
John Westcott | test change
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commit | commitdiff | tree |
| 2013-06-13 |
Sarah Westcott | mgcluster with count file needed to create a nameMap...
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commit | commitdiff | tree |
| 2013-06-13 |
Sarah Westcott | added make.lefse command. fixed bug in make.contigs...
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commit | commitdiff | tree |
| 2013-05-29 |
Sarah Westcott | get.seqs not renaming sequences correctly for dups...
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commit | commitdiff | tree |
| 2013-05-29 |
Sarah Westcott | added rename.seqs command.
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commit | commitdiff | tree |
| 2013-05-28 |
Sarah Westcott | case sensitive include statement caused issues for...
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commit | commitdiff | tree |
| 2013-05-28 |
Sarah Westcott | citation changes for 1.31.0
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commit | commitdiff | tree |
| 2013-05-24 |
Sarah Westcott | Merge remote-tracking branch 'origin'
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commit | commitdiff | tree |
| 2013-05-24 |
Sarah Westcott | added debugging to otu.association
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commit | commitdiff | tree |
| 2013-05-23 |
Sarah Westcott | changes while testing
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commit | commitdiff | tree |
| 2013-05-17 |
Sarah Westcott | changed how rarefaction commands find the lci and hci...
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commit | commitdiff | tree |
| 2013-05-17 |
Sarah Westcott | added modify names parameter to set.dir
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commit | commitdiff | tree |
| 2013-05-15 |
Sarah Westcott | added make.lookup command.
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commit | commitdiff | tree |
| 2013-05-14 |
Sarah Westcott | added count file to create.database command. corrected...
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commit | commitdiff | tree |
| 2013-05-13 |
Sarah Westcott | cluster.split was not sorting the list file in order...
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commit | commitdiff | tree |
| 2013-05-13 |
Sarah Westcott | added sparcc command. fixed bug in remove.groups that...
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commit | commitdiff | tree |
| 2013-05-06 |
Sarah Westcott | paralellized parsimony, unifrac.unweighted, phylo.diversity...
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commit | commitdiff | tree |
| 2013-04-29 |
SarahsWork | added square format for phylipfile. made command work...
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commit | commitdiff | tree |
| 2013-04-29 |
SarahsWork | added shared, constaxonomy and label parameter to get...
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commit | commitdiff | tree |
| 2013-04-26 |
SarahsWork | added adjustDots function to pcr.seqs, keeps sequences...
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commit | commitdiff | tree |
| 2013-04-22 |
SarahsWork | paralellized make.table / count.seqs command. added...
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commit | commitdiff | tree |
| 2013-04-22 |
SarahsWork | added flag to count table read so that commands that...
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commit | commitdiff | tree |
| 2013-04-19 |
SarahsWork | added mothurOutJustToScreen function and changed all...
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commit | commitdiff | tree |
| 2013-04-19 |
SarahsWork | paralellized unifrac.weighted for windows. added get...
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commit | commitdiff | tree |
| 2013-04-12 |
SarahsWork | added get.metacommunity command.
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commit | commitdiff | tree |
| 2013-04-08 |
SarahsWork | added rarepercent and keepties parameters to the filter...
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commit | commitdiff | tree |
| 2013-04-03 |
SarahsWork | added name, group and count files to chop.seqs. added...
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commit | commitdiff | tree |
| 2013-04-03 |
SarahsWork | added count file to get.sabund and get.rabund commands...
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commit | commitdiff | tree |
| 2013-04-01 |
SarahsWork | added end of file character to some type type reads...
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commit | commitdiff | tree |
| 2013-03-25 |
SarahsWork | removed make count from make.contigs
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commit | commitdiff | tree |
| 2013-03-06 |
SarahsWork | added pacbio parameter to fastq.info. fixed issue with...
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commit | commitdiff | tree |
| 2013-03-06 |
SarahsWork | <= change for anova and homova. finished chimera.uchime...
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commit | commitdiff | tree |
| 2013-03-05 |
SarahsWork | Merge remote-tracking branch 'origin'
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commit | commitdiff | tree |
| 2013-03-05 |
SarahsWork | working on chimera.uchime change for dereplicate=t...
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commit | commitdiff | tree |
| 2013-02-27 |
SarahsWork | mods to resolve some misc warnings. added alignPrimer...
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commit | commitdiff | tree |
| 2013-02-19 |
SarahsWork | working on topdown in pre.cluster
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commit | commitdiff | tree |
| 2013-02-18 |
SarahsWork | linux screen.seqs segfault
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commit | commitdiff | tree |
| 2013-02-15 |
SarahsWork | test
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commit | commitdiff | tree |
| 2013-02-15 |
SarahsWork | Removed file that shouldn't be tracked
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commit | commitdiff | tree |
| 2013-02-15 |
SarahsWork | test
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commit | commitdiff | tree |
| 2013-02-15 |
SarahsWork | test commit
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commit | commitdiff | tree |
| 2013-02-13 |
Sarah Westcott | added trim overlap parameter to make.contigs
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commit | commitdiff | tree |
| 2013-02-13 |
Sarah Westcott | added merge.taxsummary command. added column format...
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commit | commitdiff | tree |
| 2013-02-12 |
Sarah Westcott | added order=A or order=B to trim.flows and shhh.flows...
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commit | commitdiff | tree |
| 2013-02-11 |
Sarah Westcott | added ':' name check to seq. error and fastq.info....
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commit | commitdiff | tree |
| 2013-02-06 |
Sarah Westcott | added *.count.summary file to count.groups command...
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commit | commitdiff | tree |
| 2013-01-29 |
Sarah Westcott | added get.dists and remove.dists commands. fixed bug...
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commit | commitdiff | tree |
| 2013-01-28 |
Sarah Westcott | added checks to make sure windows processes completed...
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commit | commitdiff | tree |
| 2013-01-25 |
Sarah Westcott | added primer.design command. fixed bug with linux...
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commit | commitdiff | tree |
| 2013-01-18 |
Sarah Westcott | fixed seq. error align=f issue. added std and ave calcs...
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commit | commitdiff | tree |
| 2013-01-16 |
Sarah Westcott | added topdown parameter to pre.cluster. added more...
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commit | commitdiff | tree |
| 2013-01-11 |
Sarah Westcott | fixed bug in pre.cluster with output file name change...
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commit | commitdiff | tree |
| 2013-01-08 |
Sarah Westcott | added dereplicate parameter to chimera.slayer and chimera...
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commit | commitdiff | tree |
| 2013-01-04 |
Sarah Westcott | Merge remote-tracking branch 'origin/master'
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commit | commitdiff | tree |
| 2013-01-04 |
Sarah Westcott | added filter.shared command. fixed lci and uci for...
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commit | commitdiff | tree |
| 2012-12-21 |
Sarah Westcott | added ignore option to oligos files for make.contigs...
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commit | commitdiff | tree |
| 2012-12-21 |
Sarah Westcott | trim.seqs filename
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commit | commitdiff | tree |
| 2012-12-21 |
Sarah Westcott | working on make.contigs. fixed trim.seqs filename issue
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commit | commitdiff | tree |
| 2012-12-18 |
Sarah Westcott | added sharedotu parameter to venn command. working...
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commit | commitdiff | tree |
| 2012-12-17 |
Sarah Westcott | fixed issue in tree.shared when shared file was not...
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commit | commitdiff | tree |
| 2012-12-14 |
Sarah Westcott | added warning to readBlast to warn about duplicate...
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commit | commitdiff | tree |
| 2012-12-14 |
Sarah Westcott | added kruskwalliscommand to Xcode project and fixed...
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commit | commitdiff | tree |
| 2012-12-14 |
Sarah Westcott | fixed outputName creator, added debugging to readblast
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commit | commitdiff | tree |
| 2012-12-13 |
Sarah Westcott | Merge remote-tracking branch 'origin/master'
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commit | commitdiff | tree |
| 2012-12-13 |
Sarah Westcott | fixed bug in phylo.diversity rooting. added filename...
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commit | commitdiff | tree |
| 2012-11-06 |
Sarah Westcott | changed added group output to indicator command. a...
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commit | commitdiff | tree |
| 2012-11-02 |
Sarah Westcott | fix to summary.tax for 1.28.0
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commit | commitdiff | tree |
| 2012-10-30 |
Sarah Westcott | Merge remote-tracking branch 'origin/master'
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commit | commitdiff | tree |
| 2012-10-30 |
Sarah Westcott | classify.seqs allows sequences to be in taxonomy file...
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commit | commitdiff | tree |
| 2012-10-22 |
Sarah Westcott | Merge remote-tracking branch 'origin/master'
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commit | commitdiff | tree |
| 2012-10-22 |
Sarah Westcott | added sets to amova and homova commands. added oligos...
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commit | commitdiff | tree |
| 2012-10-09 |
Sarah Westcott | changed dups parameter to dereplicate in chimera.uchime.
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commit | commitdiff | tree |
| 2012-10-09 |
Sarah Westcott | added dups parameter to chimera.uchime. working on...
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commit | commitdiff | tree |
| 2012-10-03 |
Sarah Westcott | added zap method to classify.seqs and changed bayesian...
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commit | commitdiff | tree |
| 2012-10-02 |
Sarah Westcott | added classify.shared command and random forest files...
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commit | commitdiff | tree |
| 2012-09-25 |
Sarah Westcott | added count file to get.oturep, pre.cluster, screen...
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commit | commitdiff | tree |
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