started work on classify.seqs command. changed the database class so that it does...

[mothur.git] / commandfactory.cpp

diff --git a/commandfactory.cpp b/commandfactory.cpp
index 5f07abb59e03e161bd46bc60065eb15e37107a06..030079ed21e3a6d4f35263f45d46a67878715e5b 100644 (file)
--- a/commandfactory.cpp
+++ b/commandfactory.cpp
@@ -58,6 +58,7 @@
 #include "getsharedotucommand.h"
 #include "getlistcountcommand.h"
 #include "hclustercommand.h"
+#include "classifyseqscommand.h"
 
 /***********************************************************/
 
@@ -114,8 +115,8 @@ CommandFactory::CommandFactory(){
        commands["get.sharedotu"]               = "get.sharedotu";
        commands["get.listcount"]               = "get.listcount";
        commands["quit"]                                = "quit"; 
-       
        commands["hcluster"]                    = "hcluster"; 
+       commands["classify.seqs"]               = "classify.seqs"; 
 
 }
 /***********************************************************/
@@ -180,8 +181,8 @@ Command* CommandFactory::getCommand(string commandName, string optionString){
                else if(commandName == "align.check")                   {       command = new AlignCheckCommand(optionString);                  }
                else if(commandName == "get.sharedotu")                 {       command = new GetSharedOTUCommand(optionString);                }
                else if(commandName == "get.listcount")                 {       command = new GetListCountCommand(optionString);                }
-               
                else if(commandName == "hcluster")                              {       command = new HClusterCommand(optionString);                    }
+               else if(commandName == "classify.seqs")                 {       command = new ClassifySeqsCommand(optionString);                }
                else                                                                                    {       command = new NoCommand(optionString);                                  }
 
                return command;