started work on classify.seqs command. changed the database class so that it does...

[mothur.git] / nast.cpp

diff --git a/nast.cpp b/nast.cpp
index f247037cc915fd1d54d9d1e050abde8f73711fba..4848eb20be0b5cfdb43715b5ba1589d253ba4571 100644 (file)
--- a/nast.cpp
+++ b/nast.cpp
@@ -40,12 +40,12 @@ Nast::Nast(Alignment* method, Sequence* cand, Sequence* temp) : alignment(method
 void Nast::pairwiseAlignSeqs(){        //      Here we call one of the pairwise alignment methods to align our unaligned candidate
                                                                //      and template sequences
        try {
-               
+
                alignment->align(candidateSeq->getUnaligned(), templateSeq->getUnaligned());
-       
+               
                string candAln = alignment->getSeqAAln();
                string tempAln = alignment->getSeqBAln();
-
+               
                if(candAln == ""){
 
                        candidateSeq->setPairwise("");