started work on classify.seqs command. changed the database class so that it does...

[mothur.git] / distancedb.cpp

diff --git a/distancedb.cpp b/distancedb.cpp
index 30f93597983e9c83fdc1ffcf54fb1998dc6112d0..d6ec258702207ca1312e004f0f275095f506f326 100644 (file)
--- a/distancedb.cpp
+++ b/distancedb.cpp
@@ -54,7 +54,8 @@ Sequence DistanceDB::findClosestSequence(Sequence* candidateSeq){
        searchScore = 100. * simAccession.simScore;
        searchIndex++;
 //     return templateSequences[closestMatchIndexNumber];
-       return templateSequences[simAccession.indexNumber];
+       if (templateValid) {  return templateSequences[simAccession.indexNumber];       }
+       else {  return emptySequence;   }
        
 }