started work on classify.seqs command. changed the database class so that it does...

[mothur.git] / aligncommand.h

diff --git a/aligncommand.h b/aligncommand.h
index 50e9bffb3ba26790d4b0531605d34cf99f173dbe..c3c244138a7b2457dd20ba5bedc152b88f0e0e2b 100644 (file)
--- a/aligncommand.h
+++ b/aligncommand.h
@@ -14,6 +14,7 @@
 #include "command.hpp"
 #include "database.hpp"
 #include "alignment.hpp"
+#include "alignmentdb.h"
 
 class AlignCommand : public Command {
        
@@ -32,7 +33,7 @@ private:
        vector<int> processIDS;   //processid
        vector<linePair*> lines;
        
-       Database* templateDB;
+       AlignmentDB* templateDB;
        Alignment* alignment;
        
        int driver(linePair*, string, string);