git.donarmstrong.com Git - biopieces.git/history

]> git.donarmstrong.com Git - biopieces.git/history - bp_test/test

2013-06-04	martinahansen	revamped find_homopolymers	tree \| commitdiff
2013-04-11	martinahansen	added index_vals biopiece	tree \| commitdiff
2013-03-08	martinahansen	added split_pair_seq biopiece	tree \| commitdiff
2013-03-08	martinahansen	added new Biopiece merge_pair_seq	tree \| commitdiff
2013-03-08	martinahansen	dropped cat_seq Biopieces since join_seq exists	tree \| commitdiff
2013-03-08	martinahansen	added pair-end power to read_fastq	tree \| commitdiff
2013-03-08	martinahansen	rewrite of FASTQ internals	tree \| commitdiff
2013-02-25	martinahansen	fixed SCORE_BASE global var	tree \| commitdiff
2013-01-21	martinahansen	added tests for assemble_pairs biopiece	tree \| commitdiff
2013-01-20	martinahansen	added substitute_vals biopiece	tree \| commitdiff
2013-01-14	martinahansen	added tests for create_seq_index and get_seq	tree \| commitdiff
2013-01-04	martinahansen	updated pcr_seq and added tests	tree \| commitdiff
2012-11-02	martinahansen	added tests for find_pairs	tree \| commitdiff
2012-09-27	martinahansen	removed kmer_freq test files	tree \| commitdiff
2012-09-03	martinahansen	updated testing files for find_adaptor and clip_adaptor	tree \| commitdiff
2012-06-29	martinahansen	rewrote mean_scores to fix bug	tree \| commitdiff
2012-05-24	martinahansen	upgraded trim_seq	tree \| commitdiff
2012-04-11	martinahansen	ported write_fastq to ruby and allowed different encodi...	tree \| commitdiff
2012-04-10	martinahansen	upgraded tests for read_fastq	tree \| commitdiff
2012-02-23	martinahansen	added duplicate_record biopiece	tree \| commitdiff
2011-12-12	martinahansen	add tests for read_embl	tree \| commitdiff
2011-12-08	martinahansen	added replace_vals biopiece	tree \| commitdiff
2011-12-07	martinahansen	added new biopeice remove_indel_columns	tree \| commitdiff
2011-12-05	martinahansen	upgraded mask_seq	tree \| commitdiff
2011-11-21	martinahansen	added tests for uclust_seq	tree \| commitdiff
2011-11-17	martinahansen	added tests to remove_primers	tree \| commitdiff
2011-10-27	martinahansen	removed biopieces find_mids remove_mids read_solexa	tree \| commitdiff
2011-10-25	martinahansen	added find_barcodes biopiece	tree \| commitdiff
2011-10-20	martinahansen	ported trim_seq to ruby and added tests	tree \| commitdiff
2011-10-12	martinahansen	adding tests for write_fastq_files	tree \| commitdiff
2011-10-12	martinahansen	added tests for write_fasta_files	tree \| commitdiff
2011-09-29	martinahansen	added delimiter to join_seq	tree \| commitdiff
2011-09-20	martinahansen	updated patscan_seq	tree \| commitdiff
2011-09-06	martinahansen	rewrote remove_mids again	tree \| commitdiff
2011-09-05	martinahansen	updated remove_mids	tree \| commitdiff
2011-09-01	martinahansen	added tests for find_SNPs	tree \| commitdiff
2011-06-15	martinahansen	added tests for rename_keys	tree \| commitdiff
2011-06-15	martinahansen	added tests for blast_seq_pair	tree \| commitdiff
2011-06-08	martinahansen	added tests for remove_keys	tree \| commitdiff
2011-06-08	martinahansen	added tests for remove_indels	tree \| commitdiff
2011-06-08	martinahansen	added tests for reverse_seq	tree \| commitdiff
2011-06-08	martinahansen	added tests for complement_seq	tree \| commitdiff
2011-06-06	martinahansen	fixed cat_seq	tree \| commitdiff
2011-06-06	martinahansen	added cat_seq biopiece	tree \| commitdiff
2011-06-05	martinahansen	added tests for uniq_vals	tree \| commitdiff
2011-06-05	martinahansen	added tests for sort_records	tree \| commitdiff
2011-06-04	martinahansen	added tests for transliterate_vals	tree \| commitdiff
2011-06-04	martinahansen	added tests for transliterate_seq	tree \| commitdiff
2011-06-03	martinahansen	added tests for length_vals	tree \| commitdiff
2011-06-03	martinahansen	added test for calc_bit_scores	tree \| commitdiff
2011-05-30	martinahansen	upgraded mean_scores	tree \| commitdiff
2011-05-26	martinahansen	added order_pairs	tree \| commitdiff
2011-05-25	martinahansen	added plot_distribution biopiece	tree \| commitdiff
2011-05-23	martinahansen	fixed find_adaptor tests	tree \| commitdiff
2011-05-13	martinahansen	add dist option to find_adaptor	tree \| commitdiff
2011-05-12	martinahansen	upgraded add_ident tests	tree \| commitdiff
2011-04-18	martinahansen	added clip_adaptor biopiece	tree \| commitdiff
2011-04-18	martinahansen	added tests for find_adaptor	tree \| commitdiff
2011-04-13	martinahansen	added remove_mids tests	tree \| commitdiff
2011-03-30	martinahansen	updated tests for find_mids	tree \| commitdiff
2011-02-08	martinahansen	added read_sff biopiece	tree \| commitdiff
2011-02-01	martinahansen	added analyze_assembly biopiece	tree \| commitdiff
2011-02-01	martinahansen	added kmer_freq biopiece and tests	tree \| commitdiff
2011-01-31	martinahansen	added tests of calc_N50	tree \| commitdiff
2011-01-29	martinahansen	added shred_seq tests	tree \| commitdiff
2011-01-17	martinahansen	added tests for find_gaps	tree \| commitdiff
2010-12-16	martinahansen	added min option to find_homopolymers	tree \| commitdiff
2010-12-16	martinahansen	added find_homopolymers biopiece	tree \| commitdiff
2010-12-10	martinahansen	added join_seq biopiece	tree \| commitdiff
2010-12-08	martinahansen	added read_genbank	tree \| commitdiff
2010-11-24	martinahansen	added tests for translate_seq	tree \| commitdiff
2010-11-24	martinahansen	added tests for uniq_seq	tree \| commitdiff
2010-11-02	martinahansen	added find_mids biopiece tests	tree \| commitdiff
2010-11-02	martinahansen	added clip_seq biopiece	tree \| commitdiff
2010-10-15	martinahansen	polishing min max sum etc	tree \| commitdiff
2010-10-15	martinahansen	polished sum_vals and added tests	tree \| commitdiff
2010-10-15	martinahansen	added tests for mean_vals	tree \| commitdiff
2010-10-15	martinahansen	add tests for analyze_seq	tree \| commitdiff
2010-10-13	martinahansen	polished read_454 and added tests	tree \| commitdiff
2010-10-12	martinahansen	upgraded scores_to_dec	tree \| commitdiff
2010-10-12	martinahansen	upgraded mask_seq	tree \| commitdiff
2010-10-12	martinahansen	added solexa switch to read_fastq	tree \| commitdiff
2010-10-12	martinahansen	upgraded read_fastq and added tests	tree \| commitdiff
2010-09-20	martinahansen	fixes and test for digest_seq	tree \| commitdiff
2010-09-13	martinahansen	added bin_vals biopiece and tests	tree \| commitdiff
2010-09-09	martinahansen	ported length_seq to ruby	tree \| commitdiff
2010-09-02	martinahansen	added scores_to_dec biopiece, wiki, and tests	tree \| commitdiff
2010-09-01	martinahansen	added tests for mask_seq	tree \| commitdiff
2010-08-17	martinahansen	updating test_read_fasta	tree \| commitdiff
2010-08-12	martinahansen	polishing testing suite	tree \| commitdiff
2010-08-12	martinahansen	added test for blast biopieces	tree \| commitdiff
2010-08-06	martinahansen	added swapcase_seq written in RUBY	tree \| commitdiff
2010-08-06	martinahansen	added test for analyze_gc	tree \| commitdiff
2010-08-06	martinahansen	added -o option and tests to analyze_vals	tree \| commitdiff
2010-08-05	martinahansen	added test for add_ident	tree \| commitdiff
2010-08-05	martinahansen	added test_read_solexa to tests	tree \| commitdiff
2010-08-04	martinahansen	added write_tab tests	tree \| commitdiff
2010-08-04	martinahansen	more polishing of testing suite	tree \| commitdiff
2010-08-04	martinahansen	polishing on testing suite	tree \| commitdiff
2010-08-03	martinahansen	added more tests	tree \| commitdiff
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