updated tests for find_mids

git-svn-id: http://biopieces.googlecode.com/svn/trunk@1313 74ccb610-7750-0410-82ae-013aeee3265d

diff --git a/bp_test/in/find_mids.in.2 b/bp_test/in/find_mids.in.2
new file mode 100644 (file)
index 0000000..2441241
--- /dev/null
+++ b/bp_test/in/find_mids.in.2
@@ -0,0 +1,306 @@
+SEQ: ACGAGTGCGTatcg
+---
+SEQ: ACGCTCGACAatcg
+---
+SEQ: AGACGCACTCatcg
+---
+SEQ: AGCACTGTAGatcg
+---
+SEQ: ATCAGACACGatcg
+---
+SEQ: ATATCGCGAGatcg
+---
+SEQ: CGTGTCTCTAatcg
+---
+SEQ: CTCGCGTGTCatcg
+---
+SEQ: TAGTATCAGCatcg
+---
+SEQ: TCTCTATGCGatcg
+---
+SEQ: TGATACGTCTatcg
+---
+SEQ: TACTGAGCTAatcg
+---
+SEQ: CATAGTAGTGatcg
+---
+SEQ: CGAGAGATACatcg
+---
+SEQ: ATACGACGTAatcg
+---
+SEQ: TCACGTACTAatcg
+---
+SEQ: CGTCTAGTACatcg
+---
+SEQ: TCTACGTAGCatcg
+---
+SEQ: TGTACTACTCatcg
+---
+SEQ: ACGACTACAGatcg
+---
+SEQ: CGTAGACTAGatcg
+---
+SEQ: TACGAGTATGatcg
+---
+SEQ: TACTCTCGTGatcg
+---
+SEQ: TAGAGACGAGatcg
+---
+SEQ: TCGTCGCTCGatcg
+---
+SEQ: ACATACGCGTatcg
+---
+SEQ: ACGCGAGTATatcg
+---
+SEQ: ACTACTATGTatcg
+---
+SEQ: ACTGTACAGTatcg
+---
+SEQ: AGACTATACTatcg
+---
+SEQ: AGCGTCGTCTatcg
+---
+SEQ: AGTACGCTATatcg
+---
+SEQ: ATAGAGTACTatcg
+---
+SEQ: CACGCTACGTatcg
+---
+SEQ: CAGTAGACGTatcg
+---
+SEQ: CGACGTGACTatcg
+---
+SEQ: TACACACACTatcg
+---
+SEQ: TACACGTGATatcg
+---
+SEQ: TACAGATCGTatcg
+---
+SEQ: TACGCTGTCTatcg
+---
+SEQ: TAGTGTAGATatcg
+---
+SEQ: TCGATCACGTatcg
+---
+SEQ: TCGCACTAGTatcg
+---
+SEQ: TCTAGCGACTatcg
+---
+SEQ: TCTATACTATatcg
+---
+SEQ: TGACGTATGTatcg
+---
+SEQ: TGTGAGTAGTatcg
+---
+SEQ: ACAGTATATAatcg
+---
+SEQ: ACGCGATCGAatcg
+---
+SEQ: ACTAGCAGTAatcg
+---
+SEQ: AGCTCACGTAatcg
+---
+SEQ: AGTATACATAatcg
+---
+SEQ: AGTCGAGAGAatcg
+---
+SEQ: AGTGCTACGAatcg
+---
+SEQ: CGATCGTATAatcg
+---
+SEQ: CGCAGTACGAatcg
+---
+SEQ: CGCGTATACAatcg
+---
+SEQ: CGTACAGTCAatcg
+---
+SEQ: CGTACTCAGAatcg
+---
+SEQ: CTACGCTCTAatcg
+---
+SEQ: CTATAGCGTAatcg
+---
+SEQ: TACGTCATCAatcg
+---
+SEQ: TAGTCGCATAatcg
+---
+SEQ: TATATATACAatcg
+---
+SEQ: TATGCTAGTAatcg
+---
+SEQ: TCACGCGAGAatcg
+---
+SEQ: TCGATAGTGAatcg
+---
+SEQ: TCGCTGCGTAatcg
+---
+SEQ: TCTGACGTCAatcg
+---
+SEQ: TGAGTCAGTAatcg
+---
+SEQ: TGTAGTGTGAatcg
+---
+SEQ: TGTCACACGAatcg
+---
+SEQ: TGTCGTCGCAatcg
+---
+SEQ: ACACATACGCatcg
+---
+SEQ: ACAGTCGTGCatcg
+---
+SEQ: ACATGACGACatcg
+---
+SEQ: ACGACAGCTCatcg
+---
+SEQ: ACGTCTCATCatcg
+---
+SEQ: ACTCATCTACatcg
+---
+SEQ: ACTCGCGCACatcg
+---
+SEQ: AGAGCGTCACatcg
+---
+SEQ: AGCGACTAGCatcg
+---
+SEQ: AGTAGTGATCatcg
+---
+SEQ: AGTGACACACatcg
+---
+SEQ: AGTGTATGTCatcg
+---
+SEQ: ATAGATAGACatcg
+---
+SEQ: ATATAGTCGCatcg
+---
+SEQ: ATCTACTGACatcg
+---
+SEQ: CACGTAGATCatcg
+---
+SEQ: CACGTGTCGCatcg
+---
+SEQ: CATACTCTACatcg
+---
+SEQ: CGACACTATCatcg
+---
+SEQ: CGAGACGCGCatcg
+---
+SEQ: CGTATGCGACatcg
+---
+SEQ: CGTCGATCTCatcg
+---
+SEQ: CTACGACTGCatcg
+---
+SEQ: CTAGTCACTCatcg
+---
+SEQ: CTCTACGCTCatcg
+---
+SEQ: CTGTACATACatcg
+---
+SEQ: TAGACTGCACatcg
+---
+SEQ: TAGCGCGCGCatcg
+---
+SEQ: TAGCTCTATCatcg
+---
+SEQ: TATAGACATCatcg
+---
+SEQ: TATGATACGCatcg
+---
+SEQ: TCACTCATACatcg
+---
+SEQ: TCATCGAGTCatcg
+---
+SEQ: TCGAGCTCTCatcg
+---
+SEQ: TCGCAGACACatcg
+---
+SEQ: TCTGTCTCGCatcg
+---
+SEQ: TGAGTGACGCatcg
+---
+SEQ: TGATGTGTACatcg
+---
+SEQ: TGCTATAGACatcg
+---
+SEQ: TGCTCGCTACatcg
+---
+SEQ: ACGTGCAGCGatcg
+---
+SEQ: ACTCACAGAGatcg
+---
+SEQ: AGACTCAGCGatcg
+---
+SEQ: AGAGAGTGTGatcg
+---
+SEQ: AGCTATCGCGatcg
+---
+SEQ: AGTCTGACTGatcg
+---
+SEQ: AGTGAGCTCGatcg
+---
+SEQ: ATAGCTCTCGatcg
+---
+SEQ: ATCACGTGCGatcg
+---
+SEQ: ATCGTAGCAGatcg
+---
+SEQ: ATCGTCTGTGatcg
+---
+SEQ: ATGTACGATGatcg
+---
+SEQ: ATGTGTCTAGatcg
+---
+SEQ: CACACGATAGatcg
+---
+SEQ: CACTCGCACGatcg
+---
+SEQ: CAGACGTCTGatcg
+---
+SEQ: CAGTACTGCGatcg
+---
+SEQ: CGACAGCGAGatcg
+---
+SEQ: CGATCTGTCGatcg
+---
+SEQ: CGCGTGCTAGatcg
+---
+SEQ: CGCTCGAGTGatcg
+---
+SEQ: CGTGATGACGatcg
+---
+SEQ: CTATGTACAGatcg
+---
+SEQ: CTCGATATAGatcg
+---
+SEQ: CTCGCACGCGatcg
+---
+SEQ: CTGCGTCACGatcg
+---
+SEQ: CTGTGCGTCGatcg
+---
+SEQ: TAGCATACTGatcg
+---
+SEQ: TATACATGTGatcg
+---
+SEQ: TATCACTCAGatcg
+---
+SEQ: TATCTGATAGatcg
+---
+SEQ: TCGTGACATGatcg
+---
+SEQ: TCTGATCGAGatcg
+---
+SEQ: TGACATCTCGatcg
+---
+SEQ: TGAGCTAGAGatcg
+---
+SEQ: TGATAGAGCGatcg
+---
+SEQ: TGCGTGTGCGatcg
+---
+SEQ: TGCTAGTCAGatcg
+---
+SEQ: TGTATCACAGatcg
+---
+SEQ: TGTGCGCGTGatcg
+---

diff --git a/bp_test/out/find_mids.out.2 b/bp_test/out/find_mids.out.2
new file mode 100644 (file)
index 0000000..04b2578
--- /dev/null
+++ b/bp_test/out/find_mids.out.2
@@ -0,0 +1,1071 @@
+SEQ: ACGAGTGCGTatcg
+---
+SEQ: ACGCTCGACAatcg
+---
+SEQ: AGACGCACTCatcg
+---
+SEQ: AGCACTGTAGatcg
+---
+SEQ: ATCAGACACGatcg
+---
+SEQ: ATATCGCGAGatcg
+---
+SEQ: CGTGTCTCTAatcg
+---
+SEQ: CTCGCGTGTCatcg
+---
+SEQ: TAGTATCAGCatcg
+---
+SEQ: TCTCTATGCGatcg
+---
+SEQ: TGATACGTCTatcg
+---
+SEQ: TACTGAGCTAatcg
+---
+SEQ: CATAGTAGTGatcg
+---
+SEQ: CGAGAGATACatcg
+---
+SEQ: ATACGACGTAatcg
+---
+SEQ: TCACGTACTAatcg
+---
+SEQ: CGTCTAGTACatcg
+---
+SEQ: TCTACGTAGCatcg
+---
+SEQ: TGTACTACTCatcg
+---
+SEQ: ACGACTACAGatcg
+---
+SEQ: CGTAGACTAGatcg
+---
+SEQ: TACGAGTATGatcg
+---
+SEQ: TACTCTCGTGatcg
+---
+SEQ: TAGAGACGAGatcg
+---
+SEQ: TCGTCGCTCGatcg
+---
+SEQ: ACATACGCGTatcg
+---
+SEQ: ACGCGAGTATatcg
+---
+SEQ: ACTACTATGTatcg
+---
+SEQ: ACTGTACAGTatcg
+---
+SEQ: AGACTATACTatcg
+---
+SEQ: AGCGTCGTCTatcg
+---
+SEQ: AGTACGCTATatcg
+---
+SEQ: ATAGAGTACTatcg
+---
+SEQ: CACGCTACGTatcg
+---
+SEQ: CAGTAGACGTatcg
+---
+SEQ: CGACGTGACTatcg
+---
+SEQ: TACACACACTatcg
+---
+SEQ: TACACGTGATatcg
+---
+SEQ: TACAGATCGTatcg
+---
+SEQ: TACGCTGTCTatcg
+---
+SEQ: TAGTGTAGATatcg
+---
+SEQ: TCGATCACGTatcg
+---
+SEQ: TCGCACTAGTatcg
+---
+SEQ: TCTAGCGACTatcg
+---
+SEQ: TCTATACTATatcg
+---
+SEQ: TGACGTATGTatcg
+---
+SEQ: TGTGAGTAGTatcg
+---
+SEQ: ACAGTATATAatcg
+---
+SEQ: ACGCGATCGAatcg
+---
+SEQ: ACTAGCAGTAatcg
+---
+SEQ: AGCTCACGTAatcg
+---
+SEQ: AGTATACATAatcg
+---
+SEQ: AGTCGAGAGAatcg
+---
+SEQ: AGTGCTACGAatcg
+---
+SEQ: CGATCGTATAatcg
+---
+SEQ: CGCAGTACGAatcg
+---
+SEQ: CGCGTATACAatcg
+---
+SEQ: CGTACAGTCAatcg
+---
+SEQ: CGTACTCAGAatcg
+---
+SEQ: CTACGCTCTAatcg
+---
+SEQ: CTATAGCGTAatcg
+---
+SEQ: TACGTCATCAatcg
+---
+SEQ: TAGTCGCATAatcg
+---
+SEQ: TATATATACAatcg
+---
+SEQ: TATGCTAGTAatcg
+---
+SEQ: TCACGCGAGAatcg
+---
+SEQ: TCGATAGTGAatcg
+---
+SEQ: TCGCTGCGTAatcg
+---
+SEQ: TCTGACGTCAatcg
+---
+SEQ: TGAGTCAGTAatcg
+---
+SEQ: TGTAGTGTGAatcg
+---
+SEQ: TGTCACACGAatcg
+---
+SEQ: TGTCGTCGCAatcg
+---
+SEQ: ACACATACGCatcg
+---
+SEQ: ACAGTCGTGCatcg
+---
+SEQ: ACATGACGACatcg
+---
+SEQ: ACGACAGCTCatcg
+---
+SEQ: ACGTCTCATCatcg
+---
+SEQ: ACTCATCTACatcg
+---
+SEQ: ACTCGCGCACatcg
+---
+SEQ: AGAGCGTCACatcg
+---
+SEQ: AGCGACTAGCatcg
+---
+SEQ: AGTAGTGATCatcg
+---
+SEQ: AGTGACACACatcg
+---
+SEQ: AGTGTATGTCatcg
+---
+SEQ: ATAGATAGACatcg
+---
+SEQ: ATATAGTCGCatcg
+---
+SEQ: ATCTACTGACatcg
+---
+SEQ: CACGTAGATCatcg
+---
+SEQ: CACGTGTCGCatcg
+---
+SEQ: CATACTCTACatcg
+---
+SEQ: CGACACTATCatcg
+---
+SEQ: CGAGACGCGCatcg
+---
+SEQ: CGTATGCGACatcg
+---
+SEQ: CGTCGATCTCatcg
+---
+SEQ: CTACGACTGCatcg
+---
+SEQ: CTAGTCACTCatcg
+---
+SEQ: CTCTACGCTCatcg
+---
+SEQ: CTGTACATACatcg
+---
+SEQ: TAGACTGCACatcg
+---
+SEQ: TAGCGCGCGCatcg
+---
+SEQ: TAGCTCTATCatcg
+---
+SEQ: TATAGACATCatcg
+---
+SEQ: TATGATACGCatcg
+---
+SEQ: TCACTCATACatcg
+---
+SEQ: TCATCGAGTCatcg
+---
+SEQ: TCGAGCTCTCatcg
+---
+SEQ: TCGCAGACACatcg
+---
+SEQ: TCTGTCTCGCatcg
+---
+SEQ: TGAGTGACGCatcg
+---
+SEQ: TGATGTGTACatcg
+---
+SEQ: TGCTATAGACatcg
+---
+SEQ: TGCTCGCTACatcg
+---
+SEQ: ACGTGCAGCGatcg
+---
+SEQ: ACTCACAGAGatcg
+---
+SEQ: AGACTCAGCGatcg
+---
+SEQ: AGAGAGTGTGatcg
+---
+SEQ: AGCTATCGCGatcg
+---
+SEQ: AGTCTGACTGatcg
+---
+SEQ: AGTGAGCTCGatcg
+---
+SEQ: ATAGCTCTCGatcg
+---
+SEQ: ATCACGTGCGatcg
+---
+SEQ: ATCGTAGCAGatcg
+---
+SEQ: ATCGTCTGTGatcg
+---
+SEQ: ATGTACGATGatcg
+---
+SEQ: ATGTGTCTAGatcg
+---
+SEQ: CACACGATAGatcg
+---
+SEQ: CACTCGCACGatcg
+---
+SEQ: CAGACGTCTGatcg
+---
+SEQ: CAGTACTGCGatcg
+---
+SEQ: CGACAGCGAGatcg
+---
+SEQ: CGATCTGTCGatcg
+---
+SEQ: CGCGTGCTAGatcg
+---
+SEQ: CGCTCGAGTGatcg
+---
+SEQ: CGTGATGACGatcg
+---
+SEQ: CTATGTACAGatcg
+---
+SEQ: CTCGATATAGatcg
+---
+SEQ: CTCGCACGCGatcg
+---
+SEQ: CTGCGTCACGatcg
+---
+SEQ: CTGTGCGTCGatcg
+---
+SEQ: TAGCATACTGatcg
+---
+SEQ: TATACATGTGatcg
+---
+SEQ: TATCACTCAGatcg
+---
+SEQ: TATCTGATAGatcg
+---
+SEQ: TCGTGACATGatcg
+---
+SEQ: TCTGATCGAGatcg
+---
+SEQ: TGACATCTCGatcg
+---
+SEQ: TGAGCTAGAGatcg
+---
+SEQ: TGATAGAGCGatcg
+---
+SEQ: TGCGTGTGCGatcg
+---
+SEQ: TGCTAGTCAGatcg
+---
+SEQ: TGTATCACAGatcg
+---
+SEQ: TGTGCGCGTGatcg
+---
+REC_TYPE: MID
+MID_NUM: 1
+MID_COUNT: 1
+MID_SEQ: ACGAGTGCGT
+---
+REC_TYPE: MID
+MID_NUM: 2
+MID_COUNT: 1
+MID_SEQ: ACGCTCGACA
+---
+REC_TYPE: MID
+MID_NUM: 3
+MID_COUNT: 1
+MID_SEQ: AGACGCACTC
+---
+REC_TYPE: MID
+MID_NUM: 4
+MID_COUNT: 1
+MID_SEQ: AGCACTGTAG
+---
+REC_TYPE: MID
+MID_NUM: 5
+MID_COUNT: 1
+MID_SEQ: ATCAGACACG
+---
+REC_TYPE: MID
+MID_NUM: 6
+MID_COUNT: 1
+MID_SEQ: ATATCGCGAG
+---
+REC_TYPE: MID
+MID_NUM: 7
+MID_COUNT: 1
+MID_SEQ: CGTGTCTCTA
+---
+REC_TYPE: MID
+MID_NUM: 8
+MID_COUNT: 1
+MID_SEQ: CTCGCGTGTC
+---
+REC_TYPE: MID
+MID_NUM: 9
+MID_COUNT: 1
+MID_SEQ: TAGTATCAGC
+---
+REC_TYPE: MID
+MID_NUM: 10
+MID_COUNT: 1
+MID_SEQ: TCTCTATGCG
+---
+REC_TYPE: MID
+MID_NUM: 11
+MID_COUNT: 1
+MID_SEQ: TGATACGTCT
+---
+REC_TYPE: MID
+MID_NUM: 12
+MID_COUNT: 1
+MID_SEQ: TACTGAGCTA
+---
+REC_TYPE: MID
+MID_NUM: 13
+MID_COUNT: 1
+MID_SEQ: CATAGTAGTG
+---
+REC_TYPE: MID
+MID_NUM: 14
+MID_COUNT: 1
+MID_SEQ: CGAGAGATAC
+---
+REC_TYPE: MID
+MID_NUM: 15
+MID_COUNT: 1
+MID_SEQ: ATACGACGTA
+---
+REC_TYPE: MID
+MID_NUM: 16
+MID_COUNT: 1
+MID_SEQ: TCACGTACTA
+---
+REC_TYPE: MID
+MID_NUM: 17
+MID_COUNT: 1
+MID_SEQ: CGTCTAGTAC
+---
+REC_TYPE: MID
+MID_NUM: 18
+MID_COUNT: 1
+MID_SEQ: TCTACGTAGC
+---
+REC_TYPE: MID
+MID_NUM: 19
+MID_COUNT: 1
+MID_SEQ: TGTACTACTC
+---
+REC_TYPE: MID
+MID_NUM: 20
+MID_COUNT: 1
+MID_SEQ: ACGACTACAG
+---
+REC_TYPE: MID
+MID_NUM: 21
+MID_COUNT: 1
+MID_SEQ: CGTAGACTAG
+---
+REC_TYPE: MID
+MID_NUM: 22
+MID_COUNT: 1
+MID_SEQ: TACGAGTATG
+---
+REC_TYPE: MID
+MID_NUM: 23
+MID_COUNT: 1
+MID_SEQ: TACTCTCGTG
+---
+REC_TYPE: MID
+MID_NUM: 24
+MID_COUNT: 1
+MID_SEQ: TAGAGACGAG
+---
+REC_TYPE: MID
+MID_NUM: 25
+MID_COUNT: 1
+MID_SEQ: TCGTCGCTCG
+---
+REC_TYPE: MID
+MID_NUM: 26
+MID_COUNT: 1
+MID_SEQ: ACATACGCGT
+---
+REC_TYPE: MID
+MID_NUM: 27
+MID_COUNT: 1
+MID_SEQ: ACGCGAGTAT
+---
+REC_TYPE: MID
+MID_NUM: 28
+MID_COUNT: 1
+MID_SEQ: ACTACTATGT
+---
+REC_TYPE: MID
+MID_NUM: 29
+MID_COUNT: 1
+MID_SEQ: ACTGTACAGT
+---
+REC_TYPE: MID
+MID_NUM: 30
+MID_COUNT: 1
+MID_SEQ: AGACTATACT
+---
+REC_TYPE: MID
+MID_NUM: 31
+MID_COUNT: 1
+MID_SEQ: AGCGTCGTCT
+---
+REC_TYPE: MID
+MID_NUM: 32
+MID_COUNT: 1
+MID_SEQ: AGTACGCTAT
+---
+REC_TYPE: MID
+MID_NUM: 33
+MID_COUNT: 1
+MID_SEQ: ATAGAGTACT
+---
+REC_TYPE: MID
+MID_NUM: 34
+MID_COUNT: 1
+MID_SEQ: CACGCTACGT
+---
+REC_TYPE: MID
+MID_NUM: 35
+MID_COUNT: 1
+MID_SEQ: CAGTAGACGT
+---
+REC_TYPE: MID
+MID_NUM: 36
+MID_COUNT: 1
+MID_SEQ: CGACGTGACT
+---
+REC_TYPE: MID
+MID_NUM: 37
+MID_COUNT: 1
+MID_SEQ: TACACACACT
+---
+REC_TYPE: MID
+MID_NUM: 38
+MID_COUNT: 1
+MID_SEQ: TACACGTGAT
+---
+REC_TYPE: MID
+MID_NUM: 39
+MID_COUNT: 1
+MID_SEQ: TACAGATCGT
+---
+REC_TYPE: MID
+MID_NUM: 40
+MID_COUNT: 1
+MID_SEQ: TACGCTGTCT
+---
+REC_TYPE: MID
+MID_NUM: 41
+MID_COUNT: 1
+MID_SEQ: TAGTGTAGAT
+---
+REC_TYPE: MID
+MID_NUM: 42
+MID_COUNT: 1
+MID_SEQ: TCGATCACGT
+---
+REC_TYPE: MID
+MID_NUM: 43
+MID_COUNT: 1
+MID_SEQ: TCGCACTAGT
+---
+REC_TYPE: MID
+MID_NUM: 44
+MID_COUNT: 1
+MID_SEQ: TCTAGCGACT
+---
+REC_TYPE: MID
+MID_NUM: 45
+MID_COUNT: 1
+MID_SEQ: TCTATACTAT
+---
+REC_TYPE: MID
+MID_NUM: 46
+MID_COUNT: 1
+MID_SEQ: TGACGTATGT
+---
+REC_TYPE: MID
+MID_NUM: 47
+MID_COUNT: 1
+MID_SEQ: TGTGAGTAGT
+---
+REC_TYPE: MID
+MID_NUM: 48
+MID_COUNT: 1
+MID_SEQ: ACAGTATATA
+---
+REC_TYPE: MID
+MID_NUM: 49
+MID_COUNT: 1
+MID_SEQ: ACGCGATCGA
+---
+REC_TYPE: MID
+MID_NUM: 50
+MID_COUNT: 1
+MID_SEQ: ACTAGCAGTA
+---
+REC_TYPE: MID
+MID_NUM: 51
+MID_COUNT: 1
+MID_SEQ: AGCTCACGTA
+---
+REC_TYPE: MID
+MID_NUM: 52
+MID_COUNT: 1
+MID_SEQ: AGTATACATA
+---
+REC_TYPE: MID
+MID_NUM: 53
+MID_COUNT: 1
+MID_SEQ: AGTCGAGAGA
+---
+REC_TYPE: MID
+MID_NUM: 54
+MID_COUNT: 1
+MID_SEQ: AGTGCTACGA
+---
+REC_TYPE: MID
+MID_NUM: 55
+MID_COUNT: 1
+MID_SEQ: CGATCGTATA
+---
+REC_TYPE: MID
+MID_NUM: 56
+MID_COUNT: 1
+MID_SEQ: CGCAGTACGA
+---
+REC_TYPE: MID
+MID_NUM: 57
+MID_COUNT: 1
+MID_SEQ: CGCGTATACA
+---
+REC_TYPE: MID
+MID_NUM: 58
+MID_COUNT: 1
+MID_SEQ: CGTACAGTCA
+---
+REC_TYPE: MID
+MID_NUM: 59
+MID_COUNT: 1
+MID_SEQ: CGTACTCAGA
+---
+REC_TYPE: MID
+MID_NUM: 60
+MID_COUNT: 1
+MID_SEQ: CTACGCTCTA
+---
+REC_TYPE: MID
+MID_NUM: 61
+MID_COUNT: 1
+MID_SEQ: CTATAGCGTA
+---
+REC_TYPE: MID
+MID_NUM: 62
+MID_COUNT: 1
+MID_SEQ: TACGTCATCA
+---
+REC_TYPE: MID
+MID_NUM: 63
+MID_COUNT: 1
+MID_SEQ: TAGTCGCATA
+---
+REC_TYPE: MID
+MID_NUM: 64
+MID_COUNT: 1
+MID_SEQ: TATATATACA
+---
+REC_TYPE: MID
+MID_NUM: 65
+MID_COUNT: 1
+MID_SEQ: TATGCTAGTA
+---
+REC_TYPE: MID
+MID_NUM: 66
+MID_COUNT: 1
+MID_SEQ: TCACGCGAGA
+---
+REC_TYPE: MID
+MID_NUM: 67
+MID_COUNT: 1
+MID_SEQ: TCGATAGTGA
+---
+REC_TYPE: MID
+MID_NUM: 68
+MID_COUNT: 1
+MID_SEQ: TCGCTGCGTA
+---
+REC_TYPE: MID
+MID_NUM: 69
+MID_COUNT: 1
+MID_SEQ: TCTGACGTCA
+---
+REC_TYPE: MID
+MID_NUM: 70
+MID_COUNT: 1
+MID_SEQ: TGAGTCAGTA
+---
+REC_TYPE: MID
+MID_NUM: 71
+MID_COUNT: 1
+MID_SEQ: TGTAGTGTGA
+---
+REC_TYPE: MID
+MID_NUM: 72
+MID_COUNT: 1
+MID_SEQ: TGTCACACGA
+---
+REC_TYPE: MID
+MID_NUM: 73
+MID_COUNT: 1
+MID_SEQ: TGTCGTCGCA
+---
+REC_TYPE: MID
+MID_NUM: 74
+MID_COUNT: 1
+MID_SEQ: ACACATACGC
+---
+REC_TYPE: MID
+MID_NUM: 75
+MID_COUNT: 1
+MID_SEQ: ACAGTCGTGC
+---
+REC_TYPE: MID
+MID_NUM: 76
+MID_COUNT: 1
+MID_SEQ: ACATGACGAC
+---
+REC_TYPE: MID
+MID_NUM: 77
+MID_COUNT: 1
+MID_SEQ: ACGACAGCTC
+---
+REC_TYPE: MID
+MID_NUM: 78
+MID_COUNT: 1
+MID_SEQ: ACGTCTCATC
+---
+REC_TYPE: MID
+MID_NUM: 79
+MID_COUNT: 1
+MID_SEQ: ACTCATCTAC
+---
+REC_TYPE: MID
+MID_NUM: 80
+MID_COUNT: 1
+MID_SEQ: ACTCGCGCAC
+---
+REC_TYPE: MID
+MID_NUM: 81
+MID_COUNT: 1
+MID_SEQ: AGAGCGTCAC
+---
+REC_TYPE: MID
+MID_NUM: 82
+MID_COUNT: 1
+MID_SEQ: AGCGACTAGC
+---
+REC_TYPE: MID
+MID_NUM: 83
+MID_COUNT: 1
+MID_SEQ: AGTAGTGATC
+---
+REC_TYPE: MID
+MID_NUM: 84
+MID_COUNT: 1
+MID_SEQ: AGTGACACAC
+---
+REC_TYPE: MID
+MID_NUM: 85
+MID_COUNT: 1
+MID_SEQ: AGTGTATGTC
+---
+REC_TYPE: MID
+MID_NUM: 86
+MID_COUNT: 1
+MID_SEQ: ATAGATAGAC
+---
+REC_TYPE: MID
+MID_NUM: 87
+MID_COUNT: 1
+MID_SEQ: ATATAGTCGC
+---
+REC_TYPE: MID
+MID_NUM: 88
+MID_COUNT: 1
+MID_SEQ: ATCTACTGAC
+---
+REC_TYPE: MID
+MID_NUM: 89
+MID_COUNT: 1
+MID_SEQ: CACGTAGATC
+---
+REC_TYPE: MID
+MID_NUM: 90
+MID_COUNT: 1
+MID_SEQ: CACGTGTCGC
+---
+REC_TYPE: MID
+MID_NUM: 91
+MID_COUNT: 1
+MID_SEQ: CATACTCTAC
+---
+REC_TYPE: MID
+MID_NUM: 92
+MID_COUNT: 1
+MID_SEQ: CGACACTATC
+---
+REC_TYPE: MID
+MID_NUM: 93
+MID_COUNT: 1
+MID_SEQ: CGAGACGCGC
+---
+REC_TYPE: MID
+MID_NUM: 94
+MID_COUNT: 1
+MID_SEQ: CGTATGCGAC
+---
+REC_TYPE: MID
+MID_NUM: 95
+MID_COUNT: 1
+MID_SEQ: CGTCGATCTC
+---
+REC_TYPE: MID
+MID_NUM: 96
+MID_COUNT: 1
+MID_SEQ: CTACGACTGC
+---
+REC_TYPE: MID
+MID_NUM: 97
+MID_COUNT: 1
+MID_SEQ: CTAGTCACTC
+---
+REC_TYPE: MID
+MID_NUM: 98
+MID_COUNT: 1
+MID_SEQ: CTCTACGCTC
+---
+REC_TYPE: MID
+MID_NUM: 99
+MID_COUNT: 1
+MID_SEQ: CTGTACATAC
+---
+REC_TYPE: MID
+MID_NUM: 100
+MID_COUNT: 1
+MID_SEQ: TAGACTGCAC
+---
+REC_TYPE: MID
+MID_NUM: 101
+MID_COUNT: 1
+MID_SEQ: TAGCGCGCGC
+---
+REC_TYPE: MID
+MID_NUM: 102
+MID_COUNT: 1
+MID_SEQ: TAGCTCTATC
+---
+REC_TYPE: MID
+MID_NUM: 103
+MID_COUNT: 1
+MID_SEQ: TATAGACATC
+---
+REC_TYPE: MID
+MID_NUM: 104
+MID_COUNT: 1
+MID_SEQ: TATGATACGC
+---
+REC_TYPE: MID
+MID_NUM: 105
+MID_COUNT: 1
+MID_SEQ: TCACTCATAC
+---
+REC_TYPE: MID
+MID_NUM: 106
+MID_COUNT: 1
+MID_SEQ: TCATCGAGTC
+---
+REC_TYPE: MID
+MID_NUM: 107
+MID_COUNT: 1
+MID_SEQ: TCGAGCTCTC
+---
+REC_TYPE: MID
+MID_NUM: 108
+MID_COUNT: 1
+MID_SEQ: TCGCAGACAC
+---
+REC_TYPE: MID
+MID_NUM: 109
+MID_COUNT: 1
+MID_SEQ: TCTGTCTCGC
+---
+REC_TYPE: MID
+MID_NUM: 110
+MID_COUNT: 1
+MID_SEQ: TGAGTGACGC
+---
+REC_TYPE: MID
+MID_NUM: 111
+MID_COUNT: 1
+MID_SEQ: TGATGTGTAC
+---
+REC_TYPE: MID
+MID_NUM: 112
+MID_COUNT: 1
+MID_SEQ: TGCTATAGAC
+---
+REC_TYPE: MID
+MID_NUM: 113
+MID_COUNT: 1
+MID_SEQ: TGCTCGCTAC
+---
+REC_TYPE: MID
+MID_NUM: 114
+MID_COUNT: 1
+MID_SEQ: ACGTGCAGCG
+---
+REC_TYPE: MID
+MID_NUM: 115
+MID_COUNT: 1
+MID_SEQ: ACTCACAGAG
+---
+REC_TYPE: MID
+MID_NUM: 116
+MID_COUNT: 1
+MID_SEQ: AGACTCAGCG
+---
+REC_TYPE: MID
+MID_NUM: 117
+MID_COUNT: 1
+MID_SEQ: AGAGAGTGTG
+---
+REC_TYPE: MID
+MID_NUM: 118
+MID_COUNT: 1
+MID_SEQ: AGCTATCGCG
+---
+REC_TYPE: MID
+MID_NUM: 119
+MID_COUNT: 1
+MID_SEQ: AGTCTGACTG
+---
+REC_TYPE: MID
+MID_NUM: 120
+MID_COUNT: 1
+MID_SEQ: AGTGAGCTCG
+---
+REC_TYPE: MID
+MID_NUM: 121
+MID_COUNT: 1
+MID_SEQ: ATAGCTCTCG
+---
+REC_TYPE: MID
+MID_NUM: 122
+MID_COUNT: 1
+MID_SEQ: ATCACGTGCG
+---
+REC_TYPE: MID
+MID_NUM: 123
+MID_COUNT: 1
+MID_SEQ: ATCGTAGCAG
+---
+REC_TYPE: MID
+MID_NUM: 124
+MID_COUNT: 1
+MID_SEQ: ATCGTCTGTG
+---
+REC_TYPE: MID
+MID_NUM: 125
+MID_COUNT: 1
+MID_SEQ: ATGTACGATG
+---
+REC_TYPE: MID
+MID_NUM: 126
+MID_COUNT: 1
+MID_SEQ: ATGTGTCTAG
+---
+REC_TYPE: MID
+MID_NUM: 127
+MID_COUNT: 1
+MID_SEQ: CACACGATAG
+---
+REC_TYPE: MID
+MID_NUM: 128
+MID_COUNT: 1
+MID_SEQ: CACTCGCACG
+---
+REC_TYPE: MID
+MID_NUM: 129
+MID_COUNT: 1
+MID_SEQ: CAGACGTCTG
+---
+REC_TYPE: MID
+MID_NUM: 130
+MID_COUNT: 1
+MID_SEQ: CAGTACTGCG
+---
+REC_TYPE: MID
+MID_NUM: 131
+MID_COUNT: 1
+MID_SEQ: CGACAGCGAG
+---
+REC_TYPE: MID
+MID_NUM: 132
+MID_COUNT: 1
+MID_SEQ: CGATCTGTCG
+---
+REC_TYPE: MID
+MID_NUM: 133
+MID_COUNT: 1
+MID_SEQ: CGCGTGCTAG
+---
+REC_TYPE: MID
+MID_NUM: 134
+MID_COUNT: 1
+MID_SEQ: CGCTCGAGTG
+---
+REC_TYPE: MID
+MID_NUM: 135
+MID_COUNT: 1
+MID_SEQ: CGTGATGACG
+---
+REC_TYPE: MID
+MID_NUM: 136
+MID_COUNT: 1
+MID_SEQ: CTATGTACAG
+---
+REC_TYPE: MID
+MID_NUM: 137
+MID_COUNT: 1
+MID_SEQ: CTCGATATAG
+---
+REC_TYPE: MID
+MID_NUM: 138
+MID_COUNT: 1
+MID_SEQ: CTCGCACGCG
+---
+REC_TYPE: MID
+MID_NUM: 139
+MID_COUNT: 1
+MID_SEQ: CTGCGTCACG
+---
+REC_TYPE: MID
+MID_NUM: 140
+MID_COUNT: 1
+MID_SEQ: CTGTGCGTCG
+---
+REC_TYPE: MID
+MID_NUM: 141
+MID_COUNT: 1
+MID_SEQ: TAGCATACTG
+---
+REC_TYPE: MID
+MID_NUM: 142
+MID_COUNT: 1
+MID_SEQ: TATACATGTG
+---
+REC_TYPE: MID
+MID_NUM: 143
+MID_COUNT: 1
+MID_SEQ: TATCACTCAG
+---
+REC_TYPE: MID
+MID_NUM: 144
+MID_COUNT: 1
+MID_SEQ: TATCTGATAG
+---
+REC_TYPE: MID
+MID_NUM: 145
+MID_COUNT: 1
+MID_SEQ: TCGTGACATG
+---
+REC_TYPE: MID
+MID_NUM: 146
+MID_COUNT: 1
+MID_SEQ: TCTGATCGAG
+---
+REC_TYPE: MID
+MID_NUM: 147
+MID_COUNT: 1
+MID_SEQ: TGACATCTCG
+---
+REC_TYPE: MID
+MID_NUM: 148
+MID_COUNT: 1
+MID_SEQ: TGAGCTAGAG
+---
+REC_TYPE: MID
+MID_NUM: 149
+MID_COUNT: 1
+MID_SEQ: TGATAGAGCG
+---
+REC_TYPE: MID
+MID_NUM: 150
+MID_COUNT: 1
+MID_SEQ: TGCGTGTGCG
+---
+REC_TYPE: MID
+MID_NUM: 151
+MID_COUNT: 1
+MID_SEQ: TGCTAGTCAG
+---
+REC_TYPE: MID
+MID_NUM: 152
+MID_COUNT: 1
+MID_SEQ: TGTATCACAG
+---
+REC_TYPE: MID
+MID_NUM: 153
+MID_COUNT: 1
+MID_SEQ: TGTGCGCGTG
+---

diff --git a/bp_test/test/test_find_mids b/bp_test/test/test_find_mids
index 61c570925c960531a3e4b24eb994deff0d49ef25..f3d30abf671b2284d98a0304978f408932dc4f5c 100755 (executable)
--- a/bp_test/test/test_find_mids
+++ b/bp_test/test/test_find_mids
@@ -2,6 +2,10 @@
 
 source "$BP_DIR/bp_test/lib/test.sh"
 
-run "$bp -I $in -O $tmp"
+run "$bp -I $in.1 -p 4 -O $tmp"
 assert_no_diff $tmp $out.1
 clean
+
+run "$bp -I $in.2 -O $tmp"
+assert_no_diff $tmp $out.2
+clean